These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10893#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1097 fasta sequence [GGTTGATAGTTCTCATTATTGAAATAACCATAATGTTAATCAGTTACATAGATGCATATGAATGTANAATGAAGGATAGTTAAGATTAGTATCCAATTCATCAAAAATGTAATCAAAGTTTATCGTTCGACTAAGTAATAGAATAAGGATAAGATCTGATTTTCCAGGTTTAATAATAGTCAAAACGTGTTATAGCTTGAATGTAGTTGTTAGGAAACAGGTACTAGGTAAGGATGGCTAATCGATTGATGAAGTAATGAAACTTCATCAGTTGAGATGGTTAGGACACGTGCTACGTATACCCGACCACCGACTGCCCCAACGAGAGATGTTTTATGGTGTAGAGGAGTAGGTTGGAAGAAAGCTAAAGGTGGCCAGACCAAAACGTGGCTCACATACATGAAGCCATCGACAAGTGGTCTGAGCCACGCTGGTAGGTGTAGATTACCTGGTTGGGATCCGCGAGATGATAGCAATCGATGGTTAGAGACCTTGAATGACATGGCTCAAGATCGTTTGCAACAGCGAAGGTACATCCAGTCTTTGTGTTCTGCCAAAGTCTAATCTTCTAAATTCTACATGTCCCTATCCTTTTTCTCTTTCCAAATCTATTTCACTGTATTATACTCTAATCTTTCTATCTACTTATCAGCTACATTTGTTAAATATTTCATCATTCTACGTTATTTTGTTTCTCCTCTCAGAATCTTCCCTCAATGTGGCAGTGAGTGCAAGCAATCCCGTTGGTTCAACATTTAATCAGGGTTTTACCTATGGTGTGACCGATACTGCTCCTGATGTTTCTACTAATTCTACTATTACTGCCAGTGCCACCACCAATTTTACTACTACTACTACTACTACTACTACTACTGATGGATTCAATCAGTCGAAATCTTCCCTCAATGTGGCAGTGAGTGCAAGCAATCCCGTTGGTTCAACATTTAATCAGTGTTTTACCTATGGTGTGACCGATACTGTTCCTGATGTTTCTACTAATTCTACTATTACTGCCAGTGCCACCCCCCGATTTTTTGTTTATTATTAGTAGTGCTACTACTGATGGATTCAATCAGTCGAAATCTTCCCTCAATGTG] [-] EMBL CD146554 [GGTTGATAGTTCTCATTATTGAAATAACCATAATGTTAATCAGTTACATAGATGCATATGAATGTANAATGAAGGATAGTTAAGATTAGTATCCAATTCATCAAAAATGTAATCAAAGTTTATCGTTCGACTAAGTAATAGAATAAGGATAAGATCTGATTTTCCAGGTTTAATAATAGTCAAAACGTGTTATAGCTTGAATGTAGTTGTTAGGAAACAGGTACTAGGTAAGGATGGCTAATCGATTGATGAAGTAATGAAACTTCATCAGTTGAGATGGTTAGGACACGTGCTACGTATACCCGACCACCGACTGCCCCAACGAGAGATGTTTTATGGTGTAGAGGAGTAGGTTGGAAGAAAGCTAAAGGTGGCCAGACCAAAACGTGGCTCACATACATGAAGCCATCGACAAGTGGTCTGAGCCACGCTGGTAGGTGTAGATTACCTGGTTGGGATCCGCGAGATGATAGCAATCGATGGTTAGAGACCTTGAATGACATGGCTCAAGATCGTTTGCAACAGCGAAGGTA ] [+] EMBL CD127789 [ aGGTAGGTGTAGACTACCTGGTTGGGATTCGCGAGATGATAGCAACCGATGGTTAGAGACCTTGAATGACATGGCTCAAAATCGTTTGCAATGGCGAAGGTGCATCCAGTCTTTGTGTTCTGCCAAAGTCTAATCTTCTAAATTCTACATGTCCCTATCCTTTTTCTCTTTCCAAATCTATTTCACTGTATTATACTCTAATCTTTCTATCTACTTATCAGCTACATTTGTTAAATATTTCATCATTCTACGTTATTTTGTTTCTCCTCTCAGAATCTTCCCTCAATGTGGCAGTGAGTGCAAGCAATCCCGTTGGTTCAACATTTAATCAGGGTTTTACCTATGGTGTGACCGATACTGCTCCTGATGTTTCTACTAATTCTACTATTACTGC ] [+] EMBL CD186427 [ gtcgaAATCTTCCCTCAATGTGGCAGTGAGTGCAAGCAATCCCGTTGGTTCAACATTTAATCAGGGTTTTACCTATNGTGTGACCGATACTGCTCCTGATGTTTCTACTAATTCTACTATTACTGCCAGTGCCACCACCAATTTTACTACTACTACTACTACTACTACTACTACTGATGGATTCAATCAGTCGAAATCTTCCCTCAATGTGGCAGTGAGTGCAAGCAATCCCGTTGGTTCAACATTTAATCAGTGTTTTACCTATGGTGTGACCGATACTGTTCCTGATGTTTCTACTAATTCTACTATTACTGCCAGTGCCACCCCCCGATTTTTTGTTTATTATTAGTAGTGCTACTACTGATGGATTCAATCAGT ] [+] EMBL CD159319 [ GCAAGCAATCCCGTTGGTTCAACATTTAATCAGGGTTTTACCTATGGTGTGACCGATACTGCTCCTGATGTTTCTACTAATTCTACTATTACTGCCAGTGCCACCACCAATTT TACTACTACTACTACTACTACTACTGATGGATTCAATCAGTCGAAATCTTCCCTCAATGTGGCAGTGAGTGCAAGCAATCCCGTTGGTTCAACATTTAATCAGGGTTTTACCTATGGTGTGACCGATACTGCTCCTGATGTTTCTACTAATTCTACTATTACTGCCAGTGCCACCACC AATTTT ACTACTACTACTACTACTACTACTGATGGATTCAATCAGTCGAAATCTTCCCTCAATGTG] consensusID : consensus_10893#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 834 fasta sequence [AAAGCCACTTATTATGACAGTGATTATTGTTCTTCATCTTTACTAGAACTTTAACTTCAATCTTTCATGGCAGTAAAAACATAACACTGTTAAGATGTATGAGACTGTGAAGTTACTATACAATATGATTTTCCATGATTCTCTATTACGGGAACTATTGTTTAATTGTAAAGTCCTTTGTCCAATTCTAAACAAATTCATTTAAATGGTTTTATTATAAAAGACAATTTTTGTTACGTAAGTTTAATTTGCTTTTATAAATGTACTTACTTGCTTACTTACGCCAGTTACTCCCAACGAAGCACAGGCCTCCGACTAGCATTCTCCAACACACTCTGTCCTGGGTCTTCCTTTCTAGTTCTATCCAATTTTTGTTCATTCTTCTCATGTTTGTCTCCATTTCTCGACGTATTGTGTTCTTTGGTCTTCCTCTTCTCCTTCGGCCTTCAGGATTCCATGTGAGGGCTTGCCTTGTGACGCAGTTGGGTGATTTCCTCAATATGTGTCCTATCCACTTCCAGTGCTTCTTCCTGATTTCTTCCTCCACCGGATGGAATCTCGTTTGTCCTCTCCCACAGTAAGTTGTTGTTAGTATCTGGCCAACAGATCTGAAGTATTTTGAGTAAACAACTGTTAATAAACACCTGTATCTTCTGGATGATGGCCTTCTCAGTTCTCCACGTCTATGCGCCATACAGTAGGACTGTCTTGACATTTGTATTGAAAATTCTGATCTTGGTGTTGGTTGACAATTGTTTTGAGTTCCAGATGTTCTTCAGTTGTAAATATGCTGCTCTCGCTTTGCCGATCCGCGTCTTCATATCTTCATCAGAG] [+] EMBL CD084483 [AAAGCCACTTATTATGACAGTGATTATTGTTCTTCATCTTTACTAGAACTTTAACTTCAATCTTTCATGGCAGTAAAAACATAACACTGTTAAGATGTATGAGACTGTGAAGTTACTATACAATATGATTTTCCATGATTCTCTATTACGGGAACTATTGTTTAATTGTAAAGTCCTTTGTCCAATTCTAAACAAATTCATTTAAATGGTTTTATTATAAAAGACAATTTTTGTTACGTAAGTTTAATTTGCTTTTATAAATGTACTTACTTGCTTACTTACGCCAGTTACTCCCAACGAAGCACAGGCCTCCGACTAGCATTCTCCAACACACTCTGTCCTGGGTCTTCCTTTCTAGTTCTATCCAATTTTTGTTCATTCTTCTCATGTTTGTCTCCATTTCTCG ] [+] EMBL CD190225 [ TCTAGTTCTATCCAATTGTTGTTCATTCTTCTCATGTCTGTCCCCATTTCTCAACGTATTGTGTTCTTTGGTCTTCCTCTTCTCCTTCGGCCTTCAGGATTCCATGTGAGGGCTTGCCTTGTGACGCAGTTGGGTGATTTCCTCAATATGTGTCCTATCCACTTCCAGTGCTTCTTCCTGATTTCTTCCTCCACCGGATGGAATCTCGTTTGTCCTCTCCCACAGTAAGTTGTTGTTAGTATCTGGCCAACAGATCTGAAGTATTTTGAGTAAACAACTGTTAATAAACACCTGTATCTTCTGGATGATGGCCT ] [+] EMBL CD068941 [ TCTTTGGTCTTCCTCTTCTGCTTCGGCCTTCAGGATTCCATGTGAGGGCTTGCCTTGTGACGCAGTTAACTGCTTTCCTCAATGTGTGTCCTATCCACTTCCAGTGCTTCTTCCcaat ] [-] EMBL BG931145 [ TCCGAAGCATTTTGCGTAGACAACTGTTAATAAACACCTGTATCTTCTGGATGATGGCATTCTCAGTTCTCCACGTCTATGCGCCATACAGTAGGACTGTCTTGACATTTGTATTGAAAATTCTGATCTTGGTGTTGGTTGACAATTGTTTTGAGTTCCAGATGTTCTTCAGTTGTAAATATGCTGCTCTCGCTTTGCCGATCCGCGTCTTCATATCTTCATCAGAG] consensusID : consensus_10893#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 771 fasta sequence [AAAGTTGGATAGAACTAGAAAAGAAGGCCCAGGACAGAGTGGGTTGGAGAATGCTGGTTGATGGCCTATGCCTCATTGTGAGTAACAGGCGTAATGCAATTTTCTACTAACTGGGATATCACAAAAGTATATTTGTTATTTACTTTTTACCTTTGTTAGGTCGGCCTCCAGAGAACTCCAACAGAGCCTCCAGAGGCTCAAAAAGAGCTCCAACCAATCAGAGCACGACAGAACATTCTGGAGTTCCAACGTGGCACGCTATCATTGGTCAGTAGCAATTTATGTCGTTAAGTGGATTGGCTGAATTAGGATGTTGATTTAACTTAA-GCAAACATCTATAAATACCTACGA-TTTTCTGTACAAAGATGAACC-TTGCAATAAAGCATCTTCTCCGTTACTCGTGTCTTCTCTCTGGTCTTCAAGTCGCTGAGTAGTGCTAGTCTTGGGGTTATCGGAATAGCTAGGATCCGAATAAGGCGTTCAACCTACGAGACATAACAAATTGGCGGCGGGGTTAGCTTATCAAGATGTCATTTACCTTTGAACAATTTGAAGCCTTGCTGGAGCGTCGAGAAAAACGATTTGAGCAGTTCCAGGTTCGTATCATAGAGACTTTAACGCAGAAATTGAACCTAAGTCAAACTGGTGCTACAGATGATGCTGCCAAGTCTAATGTCGACCACATTATTAATTCTATCCATGAATTCAATTTTGATGGTTCGTCAGGTATTACTTTCGAAACCTGGTTCAAGAAATATGAAGATTTATTCA] [+] EMBL CD182474 [AAAGTTGGATAGAACTAGAAAAGAAGGCCCAGGACAGAGTGGGTTGGAGAATGCTGGTTGATGGCCTATGCCTCATTGTGAGTAACAGGCGTAATGCAATTTTCTACTAACTGGGATATCACAAAAGTATATTTGTTATTTACTTTTTACCTTTGTTAGGTCGGCCTCCAGAGAACTCCAACAGAGCCTCCAGAGGCTCAAAAAGAGCTCCAACCAATCAGAGCACGACAGAACATTCTGGAGTTCCAACGTGGCACGCTATCATTGGTCAGTAGCAATTTATGTCGTTAAGTGGATTGACTGAATTAGGATGTTGATTTAACTTAA GCAAACATCTATAAATACCTACGA TTNTCTGTACAAAGATGAACC TTGC ATANAGCATCTTCTn ] [+] EMBL CD182640 [AAAGTTGGATAGAACTAGAAAAGAAGGCCCAGGACAGAGTGGGTTGGAGAATGCTGGTTGATGGCCTATGCCTCATTGTGAGTAACAGGCGTAATGCAATTTTCTACTAACTGGGATATCACAAAAGTATATTTGTTATTTACTTTTTACCTTTGTTAGGTCGGCCTCCAGAGAACTCCAACAGAGCCTCCAGAGGCTCAAAAAGAGCTCCAACCAATCAGAGCACGACAGAACATTCTGGAGTTCCAACGTGGCACGCTATCATTGGTCAGTAGCAATTTATGTCGTTAAGTGGATTGACTGAATTAGGATGTTGATTTAACTTAANGC AACATCTATAANTACCTACGANTTTTCTGTAC AAGATGAACCTTTGC AT AAGCATCTTtc ] [+] EMBL CD085532 [ TCCTTAAGCGGATTGGCTGAATTAGGATGTTGATTTAACTTAA GCAAACATCTATAAATACCTACGA TTTTCTGTACAAAGATGAACC TTGCACTAAAGCATCTTCTCCGTTACTCGTGTCTTCTCTCTGGTCTTCAAGTCGCTGAGTAGTGCTAGTCTTGGGGTTATCGGAATAGCTAGGATCCGAATAAGGCGTTCAACCTACGAGACATAACAAATTGGCGGCGGGGTTAGCTTATCAAGATGTCATTTACCTTTGAACAATTTGAAGCCTTGCTGGAGCGTCGAGAAAAACGATTTGAGCAGTTCCAGGTTCGTATCATAGAGACTTTAACGCAGAAATTGAACCTAAGTCAAACTGGTGCTACAGATGATGCTGCCAAGTCTAATGTCGACCACATTATTAATTCTATCCATGAATTCAATTTTGATGGTTCGTCAGGTATTACTTTCGAAACCTGGTTCAAGAAATATCAAGATTTATTCA] [+] EMBL CD085599 [ TCGTTAAGTGGATTGGCTGAATTAGGATGTTGATTTAACTTAA GCAAACATCTATAAATACCTACGA TTTTCTGTACAAAGATGAACC TTGCAATAAAGCATCTTCTCCGTTACTCGTGTCTTCTCTCTGGTCTTCAAGTCGCTGAGTAGTGCTAGTCTTGGGGTTATCGGAATAGCTAGGATCCGAATAAGGCGTTCAACCTACGAGACATAACAAATTGGCGGCGGGGTTAGCTTATCAAGACTTCATTTACCTTTGAACAATTTGAAGCCTTGCTGGAGCGTCGAGAAAAACGATTTGAGCAGTTCCAGGTTCGTATCATAGAGACTTCAACGCAGAAATTGAACCTAAGTCAAACTGGTGCTACAGATGATGCTGCCAAGTCTAATGTCGACCACATTATTAATTCTATCCATGAATTCAATTTTGATGGTTCGTCAGGTATTACTTTCGAAACCTGGTTCAAGAAATATGAAGATTTATTC ] [+] EMBL CD085561 [ TCGTTAAGTGGATTGGCTGAATTAGGATGTTGATTTAACTTAA GCAAACATCTATAAATACCTACGA TTTTCTGTACAAAGATGAACC TTGCAATAAAGCATCTTCTCCGTTACTCGTGTCTTCTCTCTGGTCTTCAAGTCGCTGAGTAGTGCTAGTCTTGGGGTTATCGGAATAGCTAGGATCCGAATAAGGCGTTCAACCTACGAGACATAACAAATTGGCGGCGGGGTTAGCTTATCAGGATGTCATTTGCCTTTGAACAATTTGAAGCCTTGCTGGAGCGTCGAGAAAAACGATTTGAGCAGTTCCAGGTTCGTATCATAGAGACTTTAACGCAGAAATTGAACCTAAGTCAAACTGGTGCTACAGATGATGCTGCCAAGTCTAATGTCGACCACATTATTAATTCTATCCATGAATTCAATTTTGATGGTTCGTCTGGTATTACTTTCGAAACCTGGTTCAAGAAATATGAAGATTTATTC ] consensusID : consensus_10893#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 556 fasta sequence [CACTTCGCGACAGACAGTCCATTG-AACCGCTGTTTTTGAAGTCCTGCGACAAGGGCTTCTTCGGGATATTTAGTTAGTTTAATATGAGCGACAGG-AAAAGTCGCAATGCATCCCGTGGAATGACTGA-AGATAGGGTTAGAGGAGTAGTCAAATGGTTTAACGTCAAGGCTGGTTATGGCTTCATTACTCGTTCTGATACCTCTTCCGATATATTCGTGCATCAAACAGCAATTTCGAGAAATAACCCTGG-GAAAATGCAGCGCTCACT-TCAGGAAAATGAAGAAGTCGAATTTTTCGTTGTTGAGGGAGACAAAGGCGTAGAGGCCTCCGATGTTACTGGGCCTGACAGAAGGCCGGTAAAGGGTAGTGCTTATGCTGCGGATCGTCCTTATGGGCGAAGCCCCAGGGAATATGGAGCGCGCGGTGATAGAAATGAATCAAATGGTTATAGAAGCAATGGGTTTGGGTCGTATCGTGGAAGAGGCAGGGGTCGCGACGGGCCCAGGGTTGGTGGTGATTTCTCAAGGAGATTTGAAGAACGCAATCCACGCGAAGT] [+] EMBL CD157836 [CACTTCGCGACAGACAGTCCATTG AACCGCTGTTTTTGAAGTCCTGCGACAAGGGCTTCTTCGGGATATTTAGTTAGTTTAATATGAGCGACAGG AAAAGTCGCAATGCATCCCGTGGAATGACTGA AGATAGGGTTAGAGGAGTAGTCAAATGGTTTAACGTCAGGGCTGGTTATGGCTTCATTACTCGTTCTGATACCTCTTCCGATATATTCGTGCATCAAACAGCAATTTCGAGAAATAACCCTGG GAAAATGCAGCGCTCACT TCAGGAAAATGAAGAAGTCGAATTTTTCGTTGTTGAGGGAGACAAAGGCGTAGAGGCCTCCGATGTTACTGGGCCTGACAGAAGGCCGGTAAAGGGTAGTGCTTATGCTGCGGATCGTCCTTATGGGCGAAGCCCCAGGGA ] [+] EMBL CD157891 [CACTTCGCGACAGACAGTCCATTG AACCGCTGTTTTTGAAGTCCTGCGACAAGGGCTTCTTCGGGATATTTAGTTAGTTTAATATGAGCGACAGG AAAAGTCGCAATGCATCCCGTGGAATGACTGA AGATAGGGTTAGAGGAGTAGTCAAATGGTTTAACGTCAAGGCTGGTTATGGCTTCATTACTCGTTCTGATACCTCTTCCGATATATTCGTGCATCAAACAGCAATTTCGAGAAATAACCCTGG GAAAATGCAGCGCTCACT TCAGGAAAATGAAGAAGTCGAATTTTTCGTTGTTGAGGGAGACAAAGGCGTAGAGGCCTCCGATGTTACTGGGCCTGACAGAAGGCCGGTAAAGGGTAGTGCTTATGCTGCGGATCGTCCTTATGGGCGAAGCCCCAGGGA ] [+] EMBL CD157867 [ ACTTCGCGACAGACAGTCCATTG AACCGCTGTTTTTGAAGTCCTGCGACAAGGGCTTCTTCGGGATATTTAGTTAGTTTAATATGAGCGACAGG AAAAGTCGCAATGCATCCCGTGGAATGACTGA ATATAGGGTTAGAGGAGTAGTCAAATGGTTTAACGTCAAGGCTGGTTATGGCTTCACTACTGGCTCTGATACCTCTTCCGATATATTCGTGCATCAAACAGCAATTTCGAGAAATAACCCTGG GAAAATGCAGCGCTCACT TCAGGAAAATGAAGAAGTCGAATTTTTCGTTGTTGAGGGAGACAAAGGCGTAGAGGCCTCCGATGTTACTGGGCCTGACAGAAGGCCGGTAAAGGGTAGTGCTTATGCTGCGGATCGTCCTTATGGGCGAAGCCCCAGGGAATATGGAGCGCGCGGTGATAGAAATGAATCAAATGGTTATAGAAGCAATGGGTTTGGGTCGTATCGTGGAAGAGGCAGGGGTCGCGACGGGCCCAGGGTTGGTGGTGATTTCTCAAGGAGATTTGAAGAACGCAATCCACGCGAAGT] [+] EMBL CD157827 [ ACTTCGCGACAAACAGTCCATTGNAACCGCTGTTTTTGAAGTCCTGCGAC AGGGCTTCTTCGGGATATTTAGTTAGTTTAATATGAGCGACAGGNAAAAGTCGCAATGCATCCCGTGGAATGACTGA TGATAGGGTTAGAGGAGTAGTCAAATGGTTTAACGTCAAGGCTGGTTATGGCTTCATTACTCGTTCTGATACCTCTTCCGATATATTCGTGCCTCAAACAGCAATTTCGAGAAATAACCCTGGNGAAAATGCAGCGCTCACTNTC GGAAAATGAAGAAGTCGAATTTTTCGTTGTTGAGGGAGACAAGGGCGTAGAGGCCTCCGATGTTACTGGGCCTGACNGAAGGCCGGTCAAGGGCAGGGCTCATGCTGCGGATCGTCCTTATGGGCGAAGCCCCCTGGA ] [+] EMBL CD157863 [ cCTTCGCGACAGACAGTCCATTG AACCGCTGTTTTTGAAGTCCTGCGACAAGGGCTTCTTCGGGATATTTAGTTAGTTTAATATGAGCGACAGG AAAAGTCGCAATGCATCCCGTGGAATGACTGATTTATAGGGTTAGAGGAGTAGTCAAATGGTTTAACGTCATGGCTGGTTATGGCTTCATTACTCGTTCTGATACCTCTTCCGATATATTCGTGCATCAAACAGCAATTTCGAGAAATAACCCTGG GAAAATGCAGCGCTCACT TCAGGAAAATGAAGAAGTCGAATTTTTCGTTGTTGAGGGAGACAAAGGCGTAGAGGCCTCCGATGTTACTGGGCCTGACAGAAGGCCGGTAAAGGGTAGTGCTTATGCTGCGGATCGTCCTTATGGGCGAAGCCCCAGGGA ] [+] EMBL CD157895 [ CTTCGCGACAGACAGTCCATTG AACCGCTGTTTTTGAAGTCCTGCGACAAGGGCTTCTTCGGGATATTTAGTTAGTTTAATATGAGCGACAGG AAAAGTCGCAATGCATCCCGTGGAATGACTGA TGATAGGGTTAGAGGAGTAGTCAAATGGTTTAACGTCAAGGCTGGTTATGGCTTCATTACTCGTTCTGATACCTCTTCCGATATATTCGTGCATCAAACAGCAATTTCGAGAAATAACCCTGG GAAAATGCAGCGCTCACT TCAGGAAAATGAAGAAGTCGAATTTTTCGTTGTTGAGGGAGACAAAGGCGTAGAGGCCTCCGATGTTACTGGGCCTGACAGAAGGCCGGTAAAGGGTAGTGCTTATGCTGCGGATCGTCCTTATGGGCGAAGCCCCAGGGA ] consensusID : consensus_10893#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence [TTGTTTTGAGTTCCAGATGTTCTTCAGTTGTAAATATGCTGCTCTTGCTTTGCCAATCCACGCCTTCACATCTGCATCAGATCTACTGTGTTCATCAATGATGCTACCCAGATATGTAAAGGTTTTCACATCCTCCGAACCTTCTCCATCAAGTGTAATTCGATTGATGCATGTTGTGTTGTGTCGGAGGATCTTGGTTTTCCTTTTTTTATATTGAGACCTACTGCTGCTGAGGCTAATACTACACCGGTCGTCTTCTCCTGCATTTGTTGTTGCGTGTGAGATAGAAGAGCCAGATCATCCGCGGAGTCTAAATCATCCAGCTCGATCCTAGCTGTCCATTGTATCCCGTGCTTCCACAGCCTCAGATGTTGACGTCTTCATAATCCAGTCGATCACCAGGAGAAAGAGAAAGGGTGAGAGTAAGCAAACTTGGCTG] [+] EMBL CD121466 [TTGTTTTGAGTTCCAGATGTTCTTCAGTTGTAAATATGCTGCTCTTGCTTTGCCAATCCACGCCTTCACATCTGCATCAGATCTACTGTGTTCATCAATGATGCTACCCAGATATGTAAAGGTTTTCACATCCTCCGAACCTTCTCCATCAAGTGTAATTCGATTGATGCATGTTGTGTTGTGTCGGAGGATCTTGGTTTTCCTTTTTTTATATTGAGACCTACTGCTGCTGAGGCTAATACTACACCGGTCGTCTTCTCCTGCATTTGTTGTTGCGTGTGAGATAGAAGAGCCAGATCATCCGCGGAGTCTAAATCATCCAGCTCGATCCTAGCTGTCCATTGTATCCCGTGCTTCCACAGCCTCAGATGTTGACGTCTTCATAATCCAGTCGATCACCAGGAGAAAGAGAAAGGGTGAGAGTAAGCAAACTTGGCTG] consensusID : consensus_10893#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 373 fasta sequence [CAGGGTTTTACCTATG-GTGTGACCGATACTGCTCCTGATGTTTCTACTAATTCTACTATTACTGCCA-GTGCCACCACCAATTTTACTACTACTACTACTACTACTGATGGATTCAATCAGTCGAAATCTTCCCTCAATGTGGCAGTGAGTGCAAGCAATCCCGTTGGTTCAACATTTAATCAGGGTTTTACCTATGGTGTGACCGATACTGCTCCTGATGTTTCTACTAATTCTACTATTACTGCCAGTGCCACCACCAATTTTACTACTACTACTACTACTACTACTGATGG-ATTCAATCAGTCGA-AATCTTCCCTCAATGTGGCAGTGAGTGCAA-CAACTCCCGTGGGTTCAACATTTAATCAGGGTTTTA] [+] EMBL CD170808 [CAGGGTTTTACCTATG GTGTGACCGATACTGCTCCTGATGTTTCTACTAATTCTACTATTACTGCCA GTGCCACCACCAATTTTACTACTACTACTACTACTACTGATGGATTCAATCAGTCGAAATCTTCCCTCAATGTGGCAGTGAGTGCAAGCAATCCCGTCGGTTCAACATTTAATCAGGGTTTTACCTATGGTGTGACCGATAGTGGTCCTGATGTTTCTACTAATTCTAGTATTACTGGCAGTGCCAACACCAATTTTACTACTACTACTACTACTACTACTGGTGGTATTCAATCAGTCGAGAGTCTTCCCTCAATGTGGCAGTGAGTGCAA CAACTCCCGTGGGTTCAACATTTAATCAGGGTTTT ] [-] EMBL CD170970 [ AGGGTTTTACCTATGTGTGTGACCGATACTGCTCCTGATGCTTCTACTCATTCTACTATTACGGCCACGTGCCACCACCCATTTTACTACTACTACTACTACTACTGATGGATTCAATCAGTCGAAATCGTCCCTCAATGTGGCAGTGAGTGCAAGCAATCCCGTTGGTTCAACATTTAATCAGGGTTTTACCTATGGTGTGACCGATACTGCTCCTGATGTTTCTACTAATTCTACTATTACTGCCAGTGCCACCACCAATTTTACTACTACTACTACTACTACTACTGATGG ATTCAATCAGTCGA AATCTTCCCTCAATGTGGCAGTGAGTGCAAGCAA TCCCGTTGGTTCAACATTTAATCAGGGTTTTA] [-] EMBL CD159212 [ cgACTGATGGATTCAATCAGTCGAAATCTTCCCTCAATGTGGCAGTGAGTGCAAGCAATCCCGTTGGTTCAACATTTAATCAGGGTTTTACCTATGGTGTGACCGATACTGCTCCTGATGTTTCTACTAATTCTACTATTACTGCCAGTGCCACCACCAATTTTACTACTACTACTACTACTACTACTGATGG ATTCAATCAGTCGA AATCTTCCCTCAATGTGG ] consensusID : consensus_10893#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 267 fasta sequence [TACCTGGGGCTGATGGTCTGGTATTGATTCGTATGTTGCGCGGCTGCCTCTCGAATCGACTGGGAAACAGTTACTTGTAACTTTTTATTTATTAATTGTGTAGTCGTTGGTGTGTGCTGAACGCTTCCTTCTTTCGTTGTCGTTGAAGGTAAACTAAAAGTTTGAGTTTCTTGCTGACGGCATAATACGTCGAATTGCGCGTTTGCATCCCGAATATTCACTACATGTTTATCTTTTATCACACATTGTATTTCAACATTTCTACAT] [+] EMBL CD068066 [TACCTGGGGCTGATGGTCTGGTATTGATTCGTATGTTGCGCGGCTGCCTCTCGAATCGACTGGGAAACAGTTACTTGTAACTTTTTATTTATTAATTGTGTAGTCGTTGGTGTGTGCTGAACGCTTCCTTCTTTCGTTGTCGTTGAAGGTAAACTAAAAGTTTGAGTTTCTTGCTGACGGCATAATACGTCGAATTGCGCGTTTGCATCCCGAATATTCACTACATGTTTATCTTTTATCACACATTGTATTTCAACATTTCTACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10893#0 GGTTGATAGTTCTCATTATTGAAATAACCATAATGTTAATCAGTTACATAGATGCATATG 60 consensus_10893#5 ------------------------------------------------------------ consensus_10893#4 ------------------------------------------------------------ consensus_10893#1 ------------------------------------------------------------ consensus_10893#2 ------------------------------------------------------------ consensus_10893#6 ------------------------------------------------------------ consensus_10893#3 ------------------------------------------------------------ consensus_10893#0 AATGTANAATGAAGGATAGTTAAGATTAGTATCCAATTCATCAAAAATGTAATCAAAGTT 120 consensus_10893#5 ------------------------------------------------------------ consensus_10893#4 ------------------------------------------------------------ consensus_10893#1 ------------------------------------------------------------ consensus_10893#2 ------------------------------------------------------------ consensus_10893#6 ------------------------------------------------------------ consensus_10893#3 ------------------------------------------------------------ consensus_10893#0 TATCGTTCGACTAAGTAATAGAATAAGGATAAGATCTGATTTTCCAGGTTTAATAATAGT 180 consensus_10893#5 ------------------------------------------------------------ consensus_10893#4 ------------------------------------------------------------ consensus_10893#1 ------------------------------------------------------------ consensus_10893#2 ------------------------------------------------------------ consensus_10893#6 ------------------------------------------------------------ consensus_10893#3 ------------------------------------------------------------ consensus_10893#0 CAAAACGTGTTATAGCTTGAATGTAGTTGTTAGGAAACAGGTACTAGGTAAGGATGGCTA 240 consensus_10893#5 ------------------------------------------------------------ consensus_10893#4 ------------------------------------------------------------ consensus_10893#1 ------------------------------------------------------------ consensus_10893#2 ------------------------------------------------------------ consensus_10893#6 ------------------------------------------------------------ consensus_10893#3 ------------------------------------------------------------ consensus_10893#0 ATCGATTGATGAAGTAATGAAACTTCATCAGTTGAGATGGTTAGGACACGTGCTACGTAT 300 consensus_10893#5 ------------------------------------------------------------ consensus_10893#4 ------------------------------------------------------------ consensus_10893#1 ------------------------------------------------------------ consensus_10893#2 ------------------------------------------------------------ consensus_10893#6 ------------------------------------------------------------ consensus_10893#3 ------------------------------------------------------------ consensus_10893#0 ACCCGACCACCGACTGCCCCAACGAGAGATGTTTTATGGTGTAGAGGAGTAGGTTGGAAG 360 consensus_10893#5 ------------------------------------------------------------ consensus_10893#4 ------------------------------------------------------------ consensus_10893#1 -------------------------------------AAAGCCACTTATTATGACAGTGA 23 consensus_10893#2 ------------------------------------------------------------ consensus_10893#6 ------------------------------------------------------------ consensus_10893#3 ------------------------------------------------------------ consensus_10893#0 AAAGCTAAAGGTGGCCAGACCAAAACGTGGCTCACATACATGAAGCCATCGACAAGTGGT 420 consensus_10893#5 ------------------------------------------------------------ consensus_10893#4 ------------------------------------------------------------ consensus_10893#1 TTATTGTTCTTCATCTTTACTAGAACTTTAACTTCAATCTTTCATGGCAGTAAAAACATA 83 consensus_10893#2 --------------------------------------------AAAGTTGGATAGAACT 16 consensus_10893#6 ------------------------------------------------------------ consensus_10893#3 ------------------------------------------------------------ consensus_10893#0 CTGAGCCACGCTGGTAGGTGTAGATTACCTGGTTGGGATCCGCGAGATGATAGCAATCGA 480 consensus_10893#5 ------------------------------------------------------------ consensus_10893#4 ------------------------------------------------------------ consensus_10893#1 ACACTGTTAAGATGTATGAGACTGTGAAGTTACTATACAATATGATTTTCCATGATTCTC 143 consensus_10893#2 AGAAAAGAAGGCCCAGGACAGAGTGGGTTGGAGAATGCTGGTTGATGGCCTATGCCTCAT 76 consensus_10893#6 ------------------------------------------------------------ consensus_10893#3 ------------------------------------------------------------ consensus_10893#0 TGGTTAGAGACCTTGAATGACATGGCTCAAGATCGTTTGCAACAGCGAAGGTACATCCAG 540 consensus_10893#5 ------------------------------------------------------------ consensus_10893#4 ------------------------------------------------------------ consensus_10893#1 TATTACGGGAACTATTGTTTAATTGTAAAGTCCTTTGTCCAATTCTAAACAAATTCATTT 203 consensus_10893#2 TGTGAGTAACAGGCGTAATGCAATTTTCTACTAACTGGGATATCACAAAAGTATATTTGT 136 consensus_10893#6 ------------------------------------------------------------ consensus_10893#3 ------------------------------------------------------------ consensus_10893#0 TCTTTGTGTTCTGCCAAAGTCTAATCTTCTAAATTCTACATGTCCCTATCCTTTTTCTCT 600 consensus_10893#5 ------------------------------------------------------------ consensus_10893#4 ------------------------------------------------------------ consensus_10893#1 AAATGGTTTTATTATAAAAGACAAT-TTTTGTTACGTAAGTTTAATTTGCTTTTATAAAT 262 consensus_10893#2 TATTTACTTTTTACCTTTGTTAGGTCGGCCTCCAGAGAACTCCAACAGAGCCTCCAGAGG 196 consensus_10893#6 ------------------------------------------------------------ consensus_10893#3 ------------------------------------------------------------ consensus_10893#0 TTCCAAATCTATTTCACTGTATTATACTCTAATCTTTCTATCTACTTATCAGCTACATTT 660 consensus_10893#5 ------------------------------------------------------------ consensus_10893#4 ------------------------------------------------------------ consensus_10893#1 GTACTTACTTGCTTACTTACGCCAGTTACTCCCAACGAAGCACAGGCCTCCGACTAGCAT 322 consensus_10893#2 CTCAAAAAGAGCTCCAACCAATCAGAGCACGACAGAACATTCTGGAGTTCCAACGTGGCA 256 consensus_10893#6 ------------------------------------------------------------ consensus_10893#3 -----------------------CACTTCGCGACAGACAGTCCATTGAACCGCTGTTTTT 37 consensus_10893#0 GTTAAATATTTCATCATTCTACGTTATTTTGTTTCTCCTCTCA-GAATCTTCCCTCAATG 719 consensus_10893#5 ------------------------------------------------------------ consensus_10893#4 ------------------------------------------------------------ consensus_10893#1 TCTCCAACACACTCTGTCCTGGGTCTTCCTTTCTAGTTCTATC-CAATTTTTGTTCATTC 381 consensus_10893#2 CGCTATCATTGGTCAGTAGCAATTTATGTCGTTAAGTGGATTGGCTGAATTAGGATGTTG 316 consensus_10893#6 ------------------------------------------------------------ consensus_10893#3 GAAGTCCTGCGACAAGGGCTTCTTCGGGATATTTAGTTAGTTTAATATGAGCGACAGGAA 97 consensus_10893#0 TGGCAGTGAGTGCAAGCAATCCCGTTGG--TTCAACATTTAATCAGGGTTTTACCTATGG 777 consensus_10893#5 -------------------------------------------CAGGGTTTTACCTATGG 17 consensus_10893#4 ---------TTGTTTTGAGTTCCAGATG--TTCTTCAGTTG-TAAATATGCTGCTCTTGC 48 consensus_10893#1 TTCTCATGTTTGTCTCCATTTCTCGACG--TATTGT-GTTCTTTGGTCTTCCTCTTCTCC 438 consensus_10893#2 ATTTAACTTAAGCAAACATCTATAAATACCTACGATTTTCTGTACAAAGATGAACCTTGC 376 consensus_10893#6 ------------------------------------------------------------ consensus_10893#3 AAGTCGCAATGCATCCCGTGGAATGACTGAAGATAGGGTTAGAGGAGTAGTCAAATGGTT 157 consensus_10893#0 TGTGACCGATACTGCTCCTGATGTTTCTACTAATTCTACTATTACTGCCA--GTGCCACC 835 consensus_10893#5 TGTGACCGATACTGCTCCTGATGTTTCTACTAATTCTACTATTACTGCCA--GTGCCACC 75 consensus_10893#4 TTTG-CCAATCCACGCCTTCACATCTGCATCAGATCTACTGTGTTCATCA--ATGATGCT 105 consensus_10893#1 TTCGGCC--TTCAGGATTCCATGTGAGGGCTTGCCTTGTGACGCAGTTGG--GTGATTTC 494 consensus_10893#2 AATAAAGCATCTTCTCCGTTACTCGTGTCTTCTCTCTGGTCTTCAAGTCG--CTGAGTAG 434 consensus_10893#6 ------------TACCTGGGGCTGATGGTCTGGTATTGATTCGTATGTTGC-GCGGCTGC 47 consensus_10893#3 TAACGTCAAGGCTGGTTATGGCTTCATTACTCGTTCTGATACCTCTTCCGATATATTCGT 217 * consensus_10893#0 ACC-AATTTTAC---TACTACTACTACTACTACTACTACTACTGATGGATTCAATCAG-- 889 consensus_10893#5 ACC-AATTTTAC---TACTACTACTACTACTAC---------TGATGGATTCAATCAG-- 120 consensus_10893#4 ACCCAGATATGT---AAAGGTTTTCACATCCTC--------CGAACCTTCTCCATCAA-- 152 consensus_10893#1 CTCAATATGTGTCCTATCCACTTCCAGTGCTTCTTC--CTGATTTCTTCCTCCACCGG-- 550 consensus_10893#2 TGCTAGTCTTGG---GGTTATCGGAATAGCTAGGATC-CGAATAAGGCGTTCAACCTA-- 488 consensus_10893#6 CTCTCGAATCGACTGGGAAACAGTTACTTGTAA----------CTTTTTATTTATTAA-- 95 consensus_10893#3 GCATCAAACAGCAATTTCGAGAAATAACCCTGGGAAAATGCAGCGCTCACTTCAGGAAAA 277 * * * consensus_10893#0 TCGAAAT-CT---TCCCTCAATGTGGCAGTGAGTG--CAAGCAATCCCGTTGGTTCAACA 943 consensus_10893#5 TCGAAAT-CT---TCCCTCAATGTGGCAGTGAGTG--CAAGCAATCCCGTTGGTTCAACA 174 consensus_10893#4 GTGTAAT-TCGA-TTGATGCATGTTGTGTTGTGT---CGGAGGATCTTGGTTTTCCTTTT 207 consensus_10893#1 ATGGAATCTCGT-TTGTCCTCTCCCACAGTAAGTTGTTGTTAGTATCTGGCCAACAGATC 609 consensus_10893#2 -CGAGAC-ATAA-CAAATTGGCGGCGGGGTTAGCT--TATCAAGAT---GTCATTTACCT 540 consensus_10893#6 TTGTGTAGTCG--TTGGTGTGTGCTGAACGCTTCCTTCTTTCGTTGTCGTTGAAGGTAAA 153 consensus_10893#3 TGAAGAAGTCGAATTTTTCGTTGTTGAGGGAGACAAAGGCGTAGAGGCCTCCGATGTTAC 337 consensus_10893#0 TT---TAATCAGTG--TTTTACCTATGGTGTG-ACCGATACTGTTCCTGATGT-TTCTAC 996 consensus_10893#5 TT---TAATCAGGG--TTTTACCTATGGTGTG-ACCGATACTGCTCCTGATGT-TTCTAC 227 consensus_10893#4 TT---TATATTGAG--ACCTACTGCTGCTGAG-GCTAATACTACACCGGTCGTCTTCTCC 261 consensus_10893#1 TGAAGTATTTTGAGTAAACAACTGTTAATAAACACCTGTATCTTCTGGATGATGGCCTTC 669 consensus_10893#2 TTGAACAATTTGAA-GCCTTGCTGGAGCGTCG-AGAAAAACGATTTGAGCAGTTCCAGGT 598 consensus_10893#6 CT-AAAAGTTTGAGTTTCTTGCTGACGGCATA-----ATACG--TCGAATTGC--GCGTT 203 consensus_10893#3 TGGGCCTGACAGAA--GGCCGGTAAAGGGTAGTGCTTATGCTGCGGATCGTCCTTATGGG 395 * consensus_10893#0 TAATTCTACTAT---TAC----TGCCAG-TGCCACCCCCCGATTTTTTGTTTATTATTAG 1048 consensus_10893#5 TAATTCTACTAT---TAC----TGCCAG-TGCCACCACC-AATTTTAC---TACTACTAC 275 consensus_10893#4 TGCATTTGTTGT---TGCG---TGTGAGATAGAAGAGCCAGATCATCCGCGGAGTCTAAA 315 consensus_10893#1 TCAGTTCTCCACGTCTATG---CGCCATACAGTAGGACTGTCTTGACATTTGTATTGAAA 726 consensus_10893#2 TCGTATCATAGAGACTTTA---ACGCAGAAATTGAACCTAAGTCAAACTGGTGCTACAGA 655 consensus_10893#6 TGCATCCCGAA----TATT---CACTACATGTTTATCTTTTATCACACATTGTATTTCAA 256 consensus_10893#3 CGAAGCCCCAGGGAATATGGAGCGCGCGGTGATAGAAATGAATCAAATG-GTTATAGAAG 454 * * * consensus_10893#0 TAGTGCTACTA---CTGA-TGGATTCAATCAGTCGAAATCTTCC-----CTCA-ATGTG- 1097 consensus_10893#5 TACTACTACTA---CTGA-TGGATTCAATCAGTCGAAATCTTCC-----CTCA-ATGTGG 325 consensus_10893#4 TCATCCAGCTCGATCCTA-GCTGTCCATTGTATCCCGTGCTTCCACAGCCTCAGATGTTG 374 consensus_10893#1 ATTCTGATCTTGGTGTTG-GTTGACAATTGTTTTGAGTTCCAGATGTTCTTCAGTTGTAA 785 consensus_10893#2 TGATGCTGCCAAGTCTAATGTCGACCACATTATTAATTCTATCCATGAATTCAATTTTGA 715 consensus_10893#6 CATTTCTACAT------------------------------------------------- 267 consensus_10893#3 CAATGGGTTTGGGTCGTATCGTGGAAGAGGCAGGGGTCGCGACGGGCCCAGGGTTGGTGG 514 consensus_10893#0 ------------------------------------------------------------ consensus_10893#5 CAGTGAGTGCAACAACTCCCGTGGGTTCAACATTTAATCAGGGTTTTA------------ 373 consensus_10893#4 ACGTCTTCATAATCCAGTCGATCACCAGGAGAAAGAGAAAGGGTGAGAGTAAGCAAACTT 434 consensus_10893#1 ATATGCTGCTCTCGCTTTGCCGATCCGCGTCTTCATATCTTCATCAGAG----------- 834 consensus_10893#2 TGGTTCGTCAGGTATTACTTTCGAAACCTGGTTCAAGAAATATGAAGATTTATTCA---- 771 consensus_10893#6 ------------------------------------------------------------ consensus_10893#3 TGATTTCTCAAGGAGATTTGAAGAACGCAATCCACGCGAAGT------------------ 556 consensus_10893#0 ----- consensus_10893#5 ----- consensus_10893#4 GGCTG 439 consensus_10893#1 ----- consensus_10893#2 ----- consensus_10893#6 ----- consensus_10893#3 ----- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||