cluster # 1236

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Schistosoma mansoni
cluster # 1236 cluster # 1236 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1236#0 length = 588 sequences # 1

consensus_1236#1 length = 536 sequences # 1

consensusID : consensus_1236#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 588
fasta sequence

                              [AAGGTATATTTGTTGGCGATCTCATGGTAACGAAAGAATACCGAGACGTGCCAAAGTTTACGGGCGGAACTGTCAAGTGTAAGCGAGTTCGCATAAGGTCACAGGTAACGGAAGGAAAACTATGTTTCGTACAGTTAAACAAACAGGTACAGTAAAACAATCACTGGTACAATTAATTATAATAATAATTGTTTCCATTGTACCAACCGCGTTCCCGTCACAAAAGTAGGTCACTACAAATGTAACAGAACTTGGTCTCAAAACAGCGTACTCTTCTTTGAAGTGTCTATTAACAAATAGGTTTTTACAAGCATTGCACATGGAACTAATTAAGCGATTCTTGGAAAACAATACAATGTAGACACTTAATCACAGTTTATCAGCTTAATCAATATAGTACTATTTTTTGAAGACATATGATAACAAACGCTTTATATATTAACATCCCATGCGTAAGACTGACGTGTGATAAGTGAGACAGTTTATCAAAATTTTAAAAAAATACATGAACATATCTAAGTAACAATTGATGTTTTAATATTTTCTTTTACGAAAGAATTGTCAGCCTTTTTACCACGTAGAAGTTGG]

[+] EMBL CD076285             [AAGGTATATTTGTTGGCGATCTCATGGTAACGAAAGAATACCGAGACGTGCCAAAGTTTACGGGCGGAACTGTCAAGTGTAAGCGAGTTCGCATAAGGTCACAGGTAACGGAAGGAAAACTATGTTTCGTACAGTTAAACAAACAGGTACAGTAAAACAATCACTGGTACAATTAATTATAATAATAATTGTTTCCATTGTACCAACCGCGTTCCCGTCACAAAAGTAGGTCACTACAAATGTAACAGAACTTGGTCTCAAAACAGCGTACTCTTCTTTGAAGTGTCTATTAACAAATAGGTTTTTACAAGCATTGCACATGGAACTAATTAAGCGATTCTTGGAAAACAATACAATGTAGACACTTAATCACAGTTTATCAGCTTAATCAATATAGTACTATTTTTTGAAGACATATGATAACAAACGCTTTATATATTAACATCCCATGCGTAAGACTGACGTGTGATAAGTGAGACAGTTTATCAAAATTTTAAAAAAATACATGAACATATCTAAGTAACAATTGATGTTTTAATATTTTCTTTTACGAAAGAATTGTCAGCCTTTTTACCACGTAGAAGTTGG]




>consensus_1236#0
AAGGTATATTTGTTGGCGATCTCATGGTAACGAAAGAATACCGAGACGTGCCAAAGTTTA
CGGGCGGAACTGTCAAGTGTAAGCGAGTTCGCATAAGGTCACAGGTAACGGAAGGAAAAC
TATGTTTCGTACAGTTAAACAAACAGGTACAGTAAAACAATCACTGGTACAATTAATTAT
AATAATAATTGTTTCCATTGTACCAACCGCGTTCCCGTCACAAAAGTAGGTCACTACAAA
TGTAACAGAACTTGGTCTCAAAACAGCGTACTCTTCTTTGAAGTGTCTATTAACAAATAG
GTTTTTACAAGCATTGCACATGGAACTAATTAAGCGATTCTTGGAAAACAATACAATGTA
GACACTTAATCACAGTTTATCAGCTTAATCAATATAGTACTATTTTTTGAAGACATATGA
TAACAAACGCTTTATATATTAACATCCCATGCGTAAGACTGACGTGTGATAAGTGAGACA
GTTTATCAAAATTTTAAAAAAATACATGAACATATCTAAGTAACAATTGATGTTTTAATA
TTTTCTTTTACGAAAGAATTGTCAGCCTTTTTACCACGTAGAAGTTGG

consensusID : consensus_1236#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 536
fasta sequence

                              [CAATCTCGGGGTATCGAAAGAATACCGAGACGTGCCAAAGTTTGAGGACGGAACTGACGAGCGCAAGCAAGTTCGTGCAAGGTCACAGGCAATGGAAGGAAAAGTGTTTTTGGTGCAGTTGAACAAACATGTACAGTAAAACAATCACTGGTACAATTGATTATGATAATAATTGTTTCCACTATAACAATCGCATTGTCGTCATAAAAGTAGGTCACCACAATATTTCCATACTTCTCCGCCTTCTCTAATTGAACTTTTATTACTTAACTCTAGTCGTTATTGCAATTTATTATTATATTTCATTGTTGTCTAATGTCAGGCCACCTCCAATAGGGTCTTGTTTGACTGAACTCAGGGTCACGTGTTTGGGAAAATGACAGGGGCCTATGTGTTCTCAAGAGCCAGAACTCTGCAACCTGGTTAGCTTAGGATTACTTAAGTCGAATTCGGTTAAATGACACTTAGGGACTATCCGTTCCTCTACCAGCCTATGGGGACTGCCTCTAGCCATGGTCAAAAAGTATGCTAAGAGG]

[+] EMBL CD089032             [CAATCTCGGGGTATCGAAAGAATACCGAGACGTGCCAAAGTTTGAGGACGGAACTGACGAGCGCAAGCAAGTTCGTGCAAGGTCACAGGCAATGGAAGGAAAAGTGTTTTTGGTGCAGTTGAACAAACATGTACAGTAAAACAATCACTGGTACAATTGATTATGATAATAATTGTTTCCACTATAACAATCGCATTGTCGTCATAAAAGTAGGTCACCACAATATTTCCATACTTCTCCGCCTTCTCTAATTGAACTTTTATTACTTAACTCTAGTCGTTATTGCAATTTATTATTATATTTCATTGTTGTCTAATGTCAGGCCACCTCCAATAGGGTCTTGTTTGACTGAACTCAGGGTCACGTGTTTGGGAAAATGACAGGGGCCTATGTGTTCTCAAGAGCCAGAACTCTGCAACCTGGTTAGCTTAGGATTACTTAAGTCGAATTCGGTTAAATGACACTTAGGGACTATCCGTTCCTCTACCAGCCTATGGGGACTGCCTCTAGCCATGGTCAAAAAGTATGCTAAGAGG]




>consensus_1236#1
CAATCTCGGGGTATCGAAAGAATACCGAGACGTGCCAAAGTTTGAGGACGGAACTGACGA
GCGCAAGCAAGTTCGTGCAAGGTCACAGGCAATGGAAGGAAAAGTGTTTTTGGTGCAGTT
GAACAAACATGTACAGTAAAACAATCACTGGTACAATTGATTATGATAATAATTGTTTCC
ACTATAACAATCGCATTGTCGTCATAAAAGTAGGTCACCACAATATTTCCATACTTCTCC
GCCTTCTCTAATTGAACTTTTATTACTTAACTCTAGTCGTTATTGCAATTTATTATTATA
TTTCATTGTTGTCTAATGTCAGGCCACCTCCAATAGGGTCTTGTTTGACTGAACTCAGGG
TCACGTGTTTGGGAAAATGACAGGGGCCTATGTGTTCTCAAGAGCCAGAACTCTGCAACC
TGGTTAGCTTAGGATTACTTAAGTCGAATTCGGTTAAATGACACTTAGGGACTATCCGTT
CCTCTACCAGCCTATGGGGACTGCCTCTAGCCATGGTCAAAAAGTATGCTAAGAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1236#0      AAGGTATATTTGTTGGCGATCTCATGGTAACGAAAGAATACCGAGACGTGCCAAAGTTTA 60
consensus_1236#1      ----------------CAATCTCGGGGTATCGAAAGAATACCGAGACGTGCCAAAGTTTG 44
                                      * *****  **** ***************************** 

consensus_1236#0      CGGGCGGAACTGTCAAGTGTAAGCGAGTTCGCATAAGGTCACAGGTAACGGAAGGAAAAC 120
consensus_1236#1      AGGACGGAACTGACGAGCGCAAGCAAGTTCGTGCAAGGTCACAGGCAATGGAAGGAAAAG 104
                       ** ******** * ** * **** ******   *********** ** ********** 

consensus_1236#0      TATGTTTCGTACAGTTAAACAAACAGGTACAGTAAAACAATCACTGGTACAATTAATTAT 180
consensus_1236#1      TGTTTTTGGTGCAGTTGAACAAACATGTACAGTAAAACAATCACTGGTACAATTGATTAT 164
                      * * *** ** ***** ******** **************************** *****

consensus_1236#0      AATAATAATTGTTTCCATTGTACCAACCGCGTTCCCGTCACAAAAGTAGGTCACTACAAA 240
consensus_1236#1      GATAATAATTGTTTCCACTATAACAATCGCATTGTCGTCATAAAAGTAGGTCACCACAA- 223
                       **************** * ** *** *** **  ***** ************* **** 

consensus_1236#0      TGTAACAGAACTTGGTCTCAAAACAGCGTACTCTTCTTTGAAGTGTCTATTAACAAATAG 300
consensus_1236#1      TATTTCCATACTT---CTC-------CGCCTTCTCTAATTGAACTTTTATTACTTAAC-- 271
                      * *  *   ****   ***       **   ***    *  *   * *****   **   

consensus_1236#0      GTTTTTACAAGCATTGCACATGGAACTAATTAAGCGATTCTTGGAAAACAATACAATGT- 359
consensus_1236#1      -----TCTAGTCGTTAT---TGCAATTTATTATTATATTTC---ATTGTTGTCTAATGTC 320
                           *  *  * **     ** ** * ****    ***     *      *  ***** 

consensus_1236#0      AGACACTTAATCACAGTTTATCAGCTTAATCAATATAGTACTATTTTTTGAAGACATATG 419
consensus_1236#1      AGGCCACCTCCAATAGGGTCTTGTTTGACTGAACTCAGGGTCACGTGTTTGGGAAA---- 376
                      ** *        * **  * *    * * * **   **    *  * **   ** *    

consensus_1236#0      ATAACAAACGCTTTATATATTAACATCCCATGCGTAAGACTGACGTGTGATAAG--TGAG 477
consensus_1236#1      ATGACAGGGGCCT-ATGTGTTCTCAA--GAGCCAGAACTCTGCAACCTGGTTAGCTTAGG 433
                      ** ***   ** * ** * **  **    *  *  **  ***     ** * **  *  *

consensus_1236#0      ACAGTTTA--TCAAAATTT-TAAAAAAATACATGAACA-TATCTAAGTAACAATTGATGT 533
consensus_1236#1      ATTACTTAAGTCGAATTCGGTTAAATGACACTTAGGGACTATCCGTTCCTCTACCAGCCT 493
                      *    ***  ** ** *   * ***  * ** *    * ****       * *      *

consensus_1236#0      TTTAATATTTTCTTTTACGAAAGAATTGTCAGCCTTTTTACCACGTAGAAGTTGG 588
consensus_1236#1      ATGGGGACTGCCTCTAGCCA-----TGGTCAAAAAGTATGCTAAGAGG------- 536
                       *    * *  ** *  * *     * ****     * * * * *  *