These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1572#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 303 fasta sequence [TCACAATTTGTATGAAGAAAGTCCTGAACCTTTGTTTAAACTGCAGTCGAACGAGTCTGGTGATGGATTGCAACGAGCACCAGTGAATTTTCAAGTGTTTTCCAGAGCAATTTAGTCCATTGGTGCTGCACATACATCAAGTGCACTTTGTGCTACACGTTTACTCATCAGAACGATATCCTGGTCTCTACGATAAACGCCTTGAATGTTTGGCCCGTGACAGGTTATTATTCGTCTTATGAAAGACTCCATCCAGATTTTCTGGAAATCAGTCGAATTTCCAGAAGTGATTCACGTGAAGCT] [+] EMBL CD061343 [TCACAATTTGTATGAAGAAAGTCCTGAACCTTTGTTTAAACTGCAGTCGAACGAGTCTGGTGATGGATTGCAACGAGCACCAGTGAATTTTCAAGTGTTTTCCAGAGCAATTTAGTCCATTGGTGCTGCACATACATCAAGTGCACTTTGTGCTACACGTTTACTCATCAGAACGATATCCTGGTCTCTACGATAAACGCCTTGAATGTTTGGCCCGTGACAGGTTATTATTCGTCTTATGAAAGACTCCATCCAGATTTTCTGGAAATCAGTCGAATTTCCAGAAGTGATTCACGTGAAGCT] consensusID : consensus_1572#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 237 fasta sequence [ATGAAGAAAGTCCTGAACCTTTGTTTAAACTGCAGTCGAACGAGTCTGGTGATGGATTGCAACAGCACCAGGAATTTTCAATGTTTTCCGAGAATTTGTCCTTGTTCGACATAATCAATGCATTTGTGTATGCTTTATCATCAGAAGATATCCTGGCTCTAGATAAAGCCTTGAAGTTTGGCCGTGAAGGTTATTATTGTCTTATGAAAACTCCATCCAGTTTTCTGAAATCAGTGA] [-] EMBL CD128582 [ATGAAGAAAGTCCTGAACCTTTGTTTAAACTGCAGTCGAACGAGTCTGGTGATGGATTGCAACAGCACCAGGAATTTTCAATGTTTTCCGAGAATTTGTCCTTGTTCGACATAATCAATGCATTTGTGTATGCTTTATCATCAGAAGATATCCTGGCTCTAGATAAAGCCTTGAAGTTTGGCCGTGAAGGTTATTATTGTCTTATGAAAACTCCATCCAGTTTTCTGAAATCAGTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1572#0 TCACAATTTGTATGAAGAAAGTCCTGAACCTTTGTTTAAACTGCAGTCGAACGAGTCTGG 60 consensus_1572#1 -----------ATGAAGAAAGTCCTGAACCTTTGTTTAAACTGCAGTCGAACGAGTCTGG 49 ************************************************* consensus_1572#0 TGATGGATTGCAACGAGCACCAGTGAATTTTCAAGTGTTTTCCAGAGCAATTTAGTCCAT 120 consensus_1572#1 TGATGGATTGCAAC-AGCACCAG-GAATTTTCAA-TGTTTTCCGAG--AATTTGTCCT-- 102 ************** ******** ********** ******** ***** * consensus_1572#0 TGGTGCTGCACATACATCAAGTGCACTTTGTGCTACACGTTTACTCATCAGAACGATATC 180 consensus_1572#1 ---TGTTCGACATA-ATCAA-TGCA-TTTGTG---TATGCTTTATCATCAGAA-GATATC 152 ** * ***** ***** **** ****** * * ** ********* ****** consensus_1572#0 CTGGTCTCTACGATAAACGCCTTGAATGTTTGGCCCGTGACAGGTTATTATTCGTCTTAT 240 consensus_1572#1 CTGG-CTCTA-GATAAA-GCCTTGAA-GTTTGGCC-GTGA-AGGTTATTATT-GTCTTAT 205 **** ***** ****** ******** ******** **** *********** ******* consensus_1572#0 GAAAGACTCCATCCAGATTTTCTGGAAATCAGTCGAATTTCCAGAAGTGATTCACGTGAA 300 consensus_1572#1 GAAA-ACTCCATCCAG-TTTTCTG-AAATCAGTGA------------------------- 237 **** *********** ******* ******** consensus_1572#0 GCT 303 consensus_1572#1 --- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||