These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_179#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 322 fasta sequence [ATTAGCAAGTGACAAAATAAAGATATAAGCATAAATCTCGTTACAAATCTTACTTGATAGTCTGAAATACCCTGAGAAAAAAGCAGTGAATCAGAAGCACACCCTGAGCACTCATTTGAACCAGTCACAGGGTAAATAATCTGACAACACGGAAGACCAAATGGTGTAGACATTTTGAAAATCAATTGATTCCATTCTGACATAGTAATCATCCTATAGAAATTTTTATGCTGAATCGAAGGAGGAAAAGGATGAAATGATAAAGAACCACCAAGTTGCAACTGAGACGTTATTGGAGTAGAAGCATTATTTTGATTTACTG] [+] EMBL CD199674 [ATTAGCAAGTGACAAAATAAAGATATAAGCATAAATCTCGTTACAAATCTTACTTGATAGTCTGAAATACCCTGAGAAAAAAGCAGTGAATCAGAAGCACACCCTGAGCACTCATTTGAACCAGTCACAGGGTAAATAATCTGACAACACGGAAGACCAAATGGTGTAGACATTTTGAAAATCAATTGATTCCATTCTGACATAGTAATCATCCTATAGAAATTTTTATGCTGAATCGAAGGAGGAAAAGGATGAAATGATAAAGAACCACCAAGTTGCAACTGAGACGTTATTGGAGTAGAAGCATTATTTTGATTTACTG] consensusID : consensus_179#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 154 fasta sequence [CTTAATTCACTGGTATCTATGCATGCATCACGAGCTAACCATTTTGTAGCAGTGTGACTAGACTGTTTAACTAATTTACAAGGAGCAGATATTTGATAGTCTGAAATACCCTGAGAAAAAAGCAGTGAATCAGAAGCACACCCTGAGCACTCAT] [+] EMBL CD129088 [CTTAATTCACTGGTATCTATGCATGCATCACGAGCTAACCATTTTGTAGCAGTGTGACTAGACTGTTTAACTAATTTACAAGGAGCAGATATTTGATAGTCTGAAATACCCTGAGAAAAAAGCAGTGAATCAGAAGCACACCCTGAGCACTCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_179#0 -----------------------------ATTAGCAAGTGACAAAATAAAGATATAAGCA 31 consensus_179#1 CTTAATTCACTGGTATCTATGCATGCATCACGAGCTAACCATTTTGTAGCAGTGTGACTA 60 * *** * * ** * * * * consensus_179#0 TA------AATCTCGTTACAAATCT----TACTTGATAGTCTGAAATACCCTGAGAAAAA 81 consensus_179#1 GACTGTTTAACTAATTTACAAGGAGCAGATATTTGATAGTCTGAAATACCCTGAGAAAAA 120 * ** ****** ** **************************** consensus_179#0 AGCAGTGAATCAGAAGCACACCCTGAGCACTCATTTGAACCAGTCACAGGGTAAATAATC 141 consensus_179#1 AGCAGTGAATCAGAAGCACACCCTGAGCACTCAT-------------------------- 154 ********************************** consensus_179#0 TGACAACACGGAAGACCAAATGGTGTAGACATTTTGAAAATCAATTGATTCCATTCTGAC 201 consensus_179#1 ------------------------------------------------------------ consensus_179#0 ATAGTAATCATCCTATAGAAATTTTTATGCTGAATCGAAGGAGGAAAAGGATGAAATGAT 261 consensus_179#1 ------------------------------------------------------------ consensus_179#0 AAAGAACCACCAAGTTGCAACTGAGACGTTATTGGAGTAGAAGCATTATTTTGATTTACT 321 consensus_179#1 ------------------------------------------------------------ consensus_179#0 G 322 consensus_179#1 - |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||