These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2210#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 570 fasta sequence [TTAGGAGTTTCTTTATGTACACCAGTAAAATTAGTAATGGAATAGGATCGACTATTATCAACATCATCATTCGAGGCATTTTTAATAAATACGTTTTCTGGAATTATTGATCGAGTACATGAAATATTCAGCTGCTTACCGTCAGCTAATGACATATCACTATAAGCATTGATTGCATGGCTACGGGATCGTGCTACATTAGCAACATGCCGACGAGCAGATACTGATCGAAAACTGGTAGTGTTTCGCTTCCGAGGAGAAGTTGAGAGATTAGCACGCCAAGGTCGTGTCTACAAATGAATCAGAAACATCACTCAAAATATATGGTAATGAGAATAGTTGGAATTGTGTAATTTAACTAAGTGCATAATATTAAAGGAAACTTTCATCAAGTCTGAATATCCAGTACAAATACCACAAAGTAAATGCTTAAATGTTTGTGTACTATAGCTTTGATGTTCGTTGTGTTATAGTTTATGATGGGACCCGACAAATCAGACAAAAAGCAAAGGAATTTACCAATCCATAGATAGTTGTTAGATATTTCACCACTCTTTTCTTCGAGTATAT] [+] EMBL CD185989 [TTAGGAGTTTCTTTATGTACACCAGTAAAATTAGTAATGGAATAGGATCGACTATTATCAACATCATCATTCGAGGCATTTTTAATAAATACGTTTTCTGGAATTATTGATCGAGTACATGAAATATTCAGCTGCTTACCGTCAGCTAATGACATATCACTATAAGCATTGATTGCATGGCTACGGGATCGTGCTACATTAGCAACATGCCGACGAGCAGATACTGATCGAAAACTGGTAGTGTTTCGCTTCCGAGGAGAAGTTGAGAGATTAGCACGCCAAGGTCGTGTCTACAAATGAATCAGAAACATCACTCAAAATATATGGTAATGAGAATAGTTGGAATTGTGTAATTTAACTAAGTGCATAATATTAAAGGAAACTTTCATCAAGTCTGAATATCCAGTACAAATACCACAAAGTAAATGCTTAAATGTTTGTGTACTATAGCTTTGATGTTCGTTGTGTTATAGTTTATGATGGGACCCGACAAATCAGACAAAAAGCAAAGGAATTTACCAATCCATAGATAGTTGTTAGATATTTCACCACTCTTTTCTTCGAGTATAT] consensusID : consensus_2210#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 380 fasta sequence [AGGGTGAGATTCTGGGCGCTCCGTTTTAGGAATTGCTTTATGTACACCAGTAAAATAAGTAATGGAATAGGATCGACTATTATCAACATCATCATTCGAGGCATTTTTAATAAATACGTATACTGGAATTATTGATCGAGTACATGAAATATTCAGCTGCTTACCGTCAGCTAATGACGTATCACTATAAGCATTGATTGCATGGCTACGGGATCGTGCTACATCAGCAACATGCCGACGAGCAGATACTGATCGAAAACTGGTAGTGTTTCGCTTCCGAGGAGAAGTTGAGAGATTAGCACGCCAAGGTCGTGTCAATTGAGCGTAGTTACTTCGACGTTCTTGTCTTGCAGTTGAGAAAATCTTTTTAGTTGACAGGG] [+] EMBL CD064410 [AGGGTGAGATTCTGGGCGCTCCGTTTTAGGAATTGCTTTATGTACACCAGTAAAATAAGTAATGGAATAGGATCGACTATTATCAACATCATCATTCGAGGCATTTTTAATAAATACGTATACTGGAATTATTGATCGAGTACATGAAATATTCAGCTGCTTACCGTCAGCTAATGACGTATCACTATAAGCATTGATTGCATGGCTACGGGATCGTGCTACATCAGCAACATGCCGACGAGCAGATACTGATCGAAAACTGGTAGTGTTTCGCTTCCGAGGAGAAGTTGAGAGATTAGCACGCCAAGGTCGTGTCAATTGAGCGTAGTTACTTCGACGTTCTTGTCTTGCAGTTGAGAAAATCTTTTTAGTTGACAGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2210#0 -------------------------TTAGGAGTTTCTTTATGTACACCAGTAAAATTAGT 35 consensus_2210#1 AGGGTGAGATTCTGGGCGCTCCGTTTTAGGAATTGCTTTATGTACACCAGTAAAATAAGT 60 ****** ** ********************* *** consensus_2210#0 AATGGAATAGGATCGACTATTATCAACATCATCATTCGAGGCATTTTTAATAAATACGTT 95 consensus_2210#1 AATGGAATAGGATCGACTATTATCAACATCATCATTCGAGGCATTTTTAATAAATACGTA 120 *********************************************************** consensus_2210#0 TTCTGGAATTATTGATCGAGTACATGAAATATTCAGCTGCTTACCGTCAGCTAATGACAT 155 consensus_2210#1 TACTGGAATTATTGATCGAGTACATGAAATATTCAGCTGCTTACCGTCAGCTAATGACGT 180 * ******************************************************** * consensus_2210#0 ATCACTATAAGCATTGATTGCATGGCTACGGGATCGTGCTACATTAGCAACATGCCGACG 215 consensus_2210#1 ATCACTATAAGCATTGATTGCATGGCTACGGGATCGTGCTACATCAGCAACATGCCGACG 240 ******************************************** *************** consensus_2210#0 AGCAGATACTGATCGAAAACTGGTAGTGTTTCGCTTCCGAGGAGAAGTTGAGAGATTAGC 275 consensus_2210#1 AGCAGATACTGATCGAAAACTGGTAGTGTTTCGCTTCCGAGGAGAAGTTGAGAGATTAGC 300 ************************************************************ consensus_2210#0 ACGCCAAGGTCGTGTCTACAAATGAATCAGAAACATCACTCAAAATATATGGTAATGAGA 335 consensus_2210#1 ACGCCAAGGTCGTGTC----AATTGAGCGTAG---TTACTTCGACGTTCTTGTCTTGC-A 352 **************** *** * * * * *** * * * ** ** * consensus_2210#0 ATAGTTGGAATTGTGTAATTTAACTAAGTGCATAATATTAAAGGAAACTTTCATCAAGTC 395 consensus_2210#1 GTTGAGAAAATCTTTTTAGTTGACAGGG-------------------------------- 380 * * *** * * * ** ** * consensus_2210#0 TGAATATCCAGTACAAATACCACAAAGTAAATGCTTAAATGTTTGTGTACTATAGCTTTG 455 consensus_2210#1 ------------------------------------------------------------ consensus_2210#0 ATGTTCGTTGTGTTATAGTTTATGATGGGACCCGACAAATCAGACAAAAAGCAAAGGAAT 515 consensus_2210#1 ------------------------------------------------------------ consensus_2210#0 TTACCAATCCATAGATAGTTGTTAGATATTTCACCACTCTTTTCTTCGAGTATAT 570 consensus_2210#1 ------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||