These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_227#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 304 fasta sequence [TTTGTATAATCATTCCGAACTCCTGCTGTGGCATAGAAAACAAATTTGTGTTCTGTGACATCAACGTACGGGGTTTTGAATAATACATCTCTGTATATGATATTCAAAAGCAGACCCTCAACAAATGCGAGTATATTCCCACAAAAATTCTGTTCCCTGTGGCCGATTTCCGCCGCCAGCATTTCATTTTCTTTTTCAAGCTTTTCAACCCTGTCTCTAAGTTTCTGATATTCTAACTTAATATTAGATATATAAAAGTCCGAAGCCATAGGAAAAGGATAACCTTGGGGTTTAAAATCTCACA] [+] EMBL CD156468 [TTTGTATAATCATTCCGAACTCCTGCTGTGGCATAGAAAACAAATTTGTGTTCTGTGACATCAACGTACGGGGTTTTGAATAATACATCTCTGTATATGATATTCAAAAGCAGACCCTCAACAAATGCGAGTATATTCCCACAAAAATTCTGTTCCCTGTGGCCGATTTCCGCCGCCAGCATTTCATTTTCTTTTTCAAGCTTTTCAACCCTGTCTCTAAGTTTCTGATATTCTAACTTAATATTAGATATATAAAAGTCCGAAGCCATAGGAAAAGGATAACCTTGGGGTTTAAAATCTCACA] consensusID : consensus_227#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 226 fasta sequence [CAAATTTGTGTCCTGGGACAAGAACGTTCGGTGTTTTGAATAGTACATCACTGTATTTCGTATTCAAAAACAGACCCTCAACAAATGCGAGTATATTCCCACAAAAATTCTGTTCCCTGTGGCCGAGTTCTGTCGTCAGCATTTCATTTTGACAATAACCTTGTATATTTATATATTCTACACCATCCTTTGTATAAACATTCCANACTCCTCCTCTGGCATCGAG] [+] EMBL CD188481 [CAAATTTGTGTCCTGGGACAAGAACGTTCGGTGTTTTGAATAGTACATCACTGTATTTCGTATTCAAAAACAGACCCTCAACAAATGCGAGTATATTCCCACAAAAATTCTGTTCCCTGTGGCCGAGTTCTGTCGTCAGCATTTCATTTTGACAATAACCTTGTATATTTATATATTCTACACCATCCTTTGTATAAACATTCCANACTCCTCCTCTGGCATCGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_227#0 TTTGTATAATCATTCCGAACTCCTGCTGTGGCATAGAAAACAAATTTGTGTTCTGTGACA 60 consensus_227#1 ----------------------------------------CAAATTTGTGTCCTGGGACA 20 *********** *** **** consensus_227#0 TCAACGTACGGGGTTTTGAATAATACATCTCTGTATATGATATTCAAAAGCAGACCCTCA 120 consensus_227#1 AGAACGTTCGGTGTTTTGAATAGTACATCACTGTATTTCGTATTCAAAAACAGACCCTCA 80 ***** *** ********** ****** ****** * ********* ********** consensus_227#0 ACAAATGCGAGTATATTCCCACAAAAATTCTGTTCCCTGTGGCCGATTTCCGCCGCCAGC 180 consensus_227#1 ACAAATGCGAGTATATTCCCACAAAAATTCTGTTCCCTGTGGCCGAGTTCTGTCGTCAGC 140 ********************************************** *** * ** **** consensus_227#0 ATTTCATTTTCTTTTTCAAGCTTTTCAACCCTGTCTCTAAGTTTCTGATATTCTAACTTA 240 consensus_227#1 ATTTCATTTT----GACAA------TAACCTTGTATATTTATATATTCTACACCATCCTT 190 ********** *** **** *** * * * * * ** * * * * consensus_227#0 ATATTAGATATATAAAAGTCCGAAGCCATAGGAAAAGGATAACCTTGGGGTTTAAAATCT 300 consensus_227#1 TGTATAAACATTCCANACTCCT---CCTCTGGCATCGAG--------------------- 226 ** * ** * * *** ** ** * * consensus_227#0 CACA 304 consensus_227#1 ---- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||