These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3295#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 376 fasta sequence [GTGTTGTAATAACGTTTACCTCATTGATAATGTTTACCTCATTTATGCCAAGTGCAGAAACTTGAAGTTTACTGAAAACTACAAATAAAACATTATTCACTATGAGTGATGAGATATTCCAGCTGTCTCTCCTTTCCTTCCTTCCTCCCTGCTTTCCTTCCTTCCTCCCTCCCTCCTTACTTCCTTACTTCATTCCTTCCTTTCTTCCCTCCATCCTTCCTTTCTATGCTCTTGCTCTATTCCTCAATACTTTGCTTGCCAGATTTGATACTTCTATACTCGCCCCTTTTGATCATCCACCTTTATGGACCCTTTTGTTGATACGTGTTTATGATCACAACACACATAAGTATGGGCACTAGTGGCACATTTGCGT] [+] EMBL CD117545 [GTGTTGTAATAACGTTTACCTCATTGATAATGTTTACCTCATTTATGCCAAGTGCAGAAACTTGAAGTTTACTGAAAACTACAAATAAAACATTATTCACTATGAGTGATGAGATATTCCAGCTGTCTCTCCTTTCCTTCCTTCCTCCCTGCTTTCCTTCCTTCCTCCCTCCCTCCTTACTTCCTTACTTCATTCCTTCCTTTCTTCCCTCCATCCTTCCTTTCTATGCTCTTGCTCTATTCCTCAATACTTTGCTTGCCAGATTTGATACTTCTATACTCGCCCCTTTTGATCATCCACCTTTATGGACCCTTTTGTTGATACGTGTTTATGATCACAACACACATAAGTATGGGCACTAGTGGCACATTTGCGT] consensusID : consensus_3295#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 375 fasta sequence [TATCGTTTGTAATAACGTTTACCTGATTGATAATGTTTACCTCATTTATGCCAAGTGCAAAAACTTGAAGTTTACTGAAAACTACAAAATAAATCATTATACACTATGAGAGATGAAATATTCCAGCTGTCTCTGCTTTCCTTCCTTCCTCCCTCCTTTCCTTCCTTCCTCCCTCCCTCCTTACTTCCTTCCTTCATTCCTTCCTTCCTTCCCTCCCTACTTCCTTCCTCTGTCCCTCCTTCCTTGCTCCCTCCTTTCCTTACAGGTATTTATCCCTACTTCCTCTCCCCATCTTATTATCCACCTCTATCTACCCATTTATTTATACATGTATCTAATCACAAACAGCTAATTATGGAGTTAACACACATTGAG] [+] EMBL CD117631 [TATCGTTTGTAATAACGTTTACCTGATTGATAATGTTTACCTCATTTATGCCAAGTGCAAAAACTTGAAGTTTACTGAAAACTACAAAATAAATCATTATACACTATGAGAGATGAAATATTCCAGCTGTCTCTGCTTTCCTTCCTTCCTCCCTCCTTTCCTTCCTTCCTCCCTCCCTCCTTACTTCCTTCCTTCATTCCTTCCTTCCTTCCCTCCCTACTTCCTTCCTCTGTCCCTCCTTCCTTGCTCCCTCCTTTCCTTACAGGTATTTATCCCTACTTCCTCTCCCCATCTTATTATCCACCTCTATCTACCCATTTATTTATACATGTATCTAATCACAAACAGCTAATTATGGAGTTAACACACATTGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3295#0 ----GTGTTGTAATAACGTTTACCTCATTGATAATGTTTACCTCATTTATGCCAAGTGCA 56 consensus_3295#1 TATCGT-TTGTAATAACGTTTACCTGATTGATAATGTTTACCTCATTTATGCCAAGTGCA 59 ** ****************** ********************************** consensus_3295#0 GAAACTTGAAGTTTACTGAAAACTACAAA-TAAAACATTATTCACTATGAGTGATGAGAT 115 consensus_3295#1 AAAACTTGAAGTTTACTGAAAACTACAAAATAAATCATTATACACTATGAGAGATGAAAT 119 **************************** **** ****** ********* ***** ** consensus_3295#0 ATTCCAGCTGTCTCTCCTTTCCTTCCTTCCTCCCTGCTTTCCTTCCTTCCTCCCTCCCTC 175 consensus_3295#1 ATTCCAGCTGTCTCTGCTTTCCTTCCTTCCTCCCTCCTTTCCTTCCTTCCTCCCTCCCTC 179 *************** ******************* ************************ consensus_3295#0 CTTACTTCCTTACTTCATTCCTTCCTTTCTTCCCTCCATCCTTCCTTTCTATGCTCTTGC 235 consensus_3295#1 CTTACTTCCTTCCTTCATTCCTTCCTTCCTTCCCTCCCTACTTCCTTCCTCTGTCCCTCC 239 *********** *************** ********* * ******* ** ** * * * consensus_3295#0 TCTATTCCTCAATACTTTGCTTGCCAGATTTGATACTTCTATACTCGCCCCTTTTGATCA 295 consensus_3295#1 TTCCTTGCTCCCTCCTTTCCTTACAGGTATTTATCCCTACTTCCTCTCCCCATCTTATTA 299 * ** *** * **** *** * * ** ** * * * *** **** * * ** * consensus_3295#0 TCCACCTTTATGGACCCTTTTGTTGATACGTGTTTATGATCACAACACACATAAGTATGG 355 consensus_3295#1 TCCACCTCTATCTACCCATTTATTTATACATGTATCTAATCACAA-ACAGCTAATTATGG 358 ******* *** **** *** ** **** *** * * ******* *** *** ***** consensus_3295#0 GCACTAGTGGCACATTTGCGT 376 consensus_3295#1 A-GTTAACA-CACATTGAG-- 375 ** ****** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||