These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3434#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 438 fasta sequence [ACAACAATACCAGCATCAACAGGACACCAAATCTCTGGTGCATCTTCTACAGGAAAAAATACTCGATCATGCACTAAACTAGGTGCATTTAAACGATCTAATCGAACACCAGGAACAAATATAAATGAAATCGATCGTGTTGGATCTATGGATAATGAGGTAAAATTATTGATGCTTTTTCCTTAGTTTTTTTTCCTATCAATAAAATACAAAGTGATTTTTGTATTATTGAAGGAAGAGAATAAATTAAGGCGACAGAGTAATTACATAATTTAGGTTCTAAACTCGTTTTAATGAAATTGCTAAATAACTTAACCGTTGTATGTGTGTGTGTGTAAGGGAGAGTAGTCTAACAAAATTGACACCTTTTTAACATATCTAACTCAAGTCTTAATCACTGAAACTGTTTAACCAAAAAAATATACTGTAACCGTGTTA] [+] EMBL CD198554 [ACAACAATACCAGCATCAACAGGACACCAAATCTCTGGTGCATCTTCTACAGGAAAAAATACTCGATCATGCACTAAACTAGGTGCATTTAAACGATCTAATCGAACACCAGGAACAAATATAAATGAAATCGATCGTGTTGGATCTATGGATAATGAGGTAAAATTATTGATGCTTTTTCCTTAGTTTTTTTTCCTATCAATAAAATACAAAGTGATTTTTGTATTATTGAAGGAAGAGAATAAATTAAGGCGACAGAGTAATTACATAATTTAGGTTCTAAACTCGTTTTAATGAAATTGCTAAATAACTTAACCGTTGTATGTGTGTGTGTGTAAGGGAGAGTAGTCTAACAAAATTGACACCTTTTTAACATATCTAACTCAAGTCTTAATCACTGAAACTGTTTAACCAAAAAAATATACTGTAACCGTGTTA] consensusID : consensus_3434#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 358 fasta sequence [ATAAATTCATAGGAGGAGGTAAACAATCATAGTCGTATACATTTTACTGACTATCGCAGTGAAATATGTATATTAGAGAAAGGTTGCAGATCATTCTCCAGCAATCCCTATATCACGCAATGCTATATCATCCACAAGTGTAACAACAGGCTACAGTTCCGGTGGAATGACATCAACAACAACAATACCAGCATCAACAGGACACCAAATCTCTGGTGCATCTTCTACAGGAAAAAATACTCGATCATGCACTAAACTAGGTGCATTTAAACGATCTAATCGAACACCAGGAACAAATATAAATGAAATCGATCGTGTTGGATCTATGGATAATGAGCGTGATGGTATCACACCATCT] [-] EMBL CD202366 [ATAAATTCATAGGAGGAGGTAAACAATCATAGTCGTATACATTTTACTGACTATCGCAGTGAAATATGTATATTAGAGAAAGGTTGCAGATCATTCTCCAGCAATCCCTATATCACGCAATGCTATATCATCCACAAGTGTAACAACAGGCTACAGTTCCGGTGGAATGACATCAACAACAACAATACCAGCATCAACAGGACACCAAATCTCTGGTGCATCTTCTACAGGAAAAAATACTCGATCATGCACTAAACTAGGTGCATTTAAACGATCTAATCGAACACCAGGAACAAATATAAATGAAATCGATCGTGTTGGATCTATGGATAATGAGCGTGATGGTATCACACCATCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3434#0 ACAACAATACCAGCATCAACAGGACACCAAATCTCTGGTGCATCTTCTACAGGAAAAAAT 60 consensus_3434#1 ------------------------------------------------------------ consensus_3434#0 ACTCGATCATGCACTAAACTAGGTGCATTTAAACGATC-TAATCGAACACCAGGAACAAA 119 consensus_3434#1 --------ATAAATTCA--TAGGAGGAGGTAAACAATCATAGTCGTATAC---------A 41 ** * * * **** * * ***** *** ** *** * ** * consensus_3434#0 TATAAATGAAATCGATCGTGTTGGATCTATGGATAATGAGGTAAAATTATTGATGCTTTT 179 consensus_3434#1 TTTTACTGA---CTATCGCAGTGAAA-TATGTATATTAGAGAAAGGTTGCAGATCATTCT 97 * * * *** * **** ** * **** *** * * ** ** *** ** * consensus_3434#0 TCCTTAGTTTTTTTTCCTATCAATAAAATACAA------AGTG-ATTTTTGTATTATTGA 232 consensus_3434#1 CCAGCAATCCCTATATCACGCAATGCTATATCATCCACAAGTGTAACAACAGGCTACAGT 157 * * * * * * **** *** * **** * ** * consensus_3434#0 AGGAAGAGAATAAATTAAGGCGACAGAGTAATTACATAATTTAGGTTCTAAACTCGTTTT 292 consensus_3434#1 TCCGGTGGAATGACATCAACAACAACAATACCAGCATCAACAGGACACCAAATC---TCT 214 **** * * * * * ** *** * * * *** * * consensus_3434#0 AATGAAATTGCTAAATAACTTAACCGTTGTATGTGTGTGTGTGTAAGGGAGAGTAGTCTA 352 consensus_3434#1 GGTGCATCTTCTACAGGAAAAAATACTCGATCATGCACTAAACTAGGTGCATTTAAACGA 274 ** * * *** * * ** * * ** ** * * ** * * consensus_3434#0 ACAAAATTGACACCTTTTTAACATATCTAACTCAAGTCTTAATCACTGAAACTGTTTAAC 412 consensus_3434#1 TCTAATCGAACACCAGG--AACAAATATAAATGAAATCGATCGTGTTGGATCTATGGATA 332 * ** ***** **** ** *** * ** ** ** * ** * * consensus_3434#0 CAAAAAAATATACTGTAACCGTGTTA 438 consensus_3434#1 ATGAGCGTGATGGTATCACACCATCT 358 * ** * * ** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||