These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3483#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 563 fasta sequence [TACACCTCAATGCTAATCAGAAAACAACTGTTGAAAATAGTAATTTATTGAATCAATACTTATTCACTTGGTGTACTATTGATCCTTCAAATGGAAAGATTATATTATCGACACAACTTCAACATTAGATGTTCCAGGAGAAAATACCATGAATGAACGAGAGAGTGACAATAGTAATACATTAAATAAAAATGCAAAGGATAATGAAAAATTATTTTCGTCATTATTATCGTCGTCATCATCATCAACACCTTCACAGACTGTATCGTCTAAATTAAATCTAATTAAAGTTTATGCAGGAGGAACAATGGTTGGATATGCGACTGGACTTGGAACACATGAAGAGTCTGATTGTCAGAATCATCATTCTTTGAAAGCATCACAGACAACTGTAAATCAATGGAGCTGTTTAATCAAGTTTATTGAACGTGTTATTGTTATTTGTGATCAAATAAATCAGAAGACGAAATCCTCTTCTCCCTCCTCATCATCTTGTAGTAGACAAATTTATGTTCAAGCTGCTCTTCATTCTGGATCATGTATATTCGGCTTTGTATCCAGTC] [+] EMBL CD201391 [TACACCTCAATGCTAATCAGAAAACAACTGTTGAAAATAGTAATTTATTGAATCAATACTTATTCACTTGGTGTACTATTGATCCTTCAAATGGAAAGATTATATTATCGACACAACTTCAACATTAGATGTTCCAGGAGAAAATACCATGAATGAACGAGAGAGTGACAATAGTAATACATTAAATAAAAATGCAAAGGATAATGAAAAATTATTTTCGTCATTATTATCGTCGTCATCATCATCAACACCTTCACAGACTGTATCGTCTAAATTAAATCTAATTAAAGTTTATGCAGGAGGAACAATGGTTGGATATGCGACTGGACTTGGAACACATGAAGAGTCTGATTGTCAGAATCATCATTCTTTGAAAGCATCACAGACAACTGTAAATCAATGGAGCTGTTTAATCAAGTTTATTGAACGTGTTATTGTTATTTGTGATCAAATAAATCAGAAGACGAAATCCTCTTCTCCCTCCTCATCATCTTGTAGTAGACAAATTTATGTTCAAGCTGCTCTTCATTCTGGATCATGTATATTCGGCTTTGTATCCAGTC] consensusID : consensus_3483#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 194 fasta sequence [GAGTACGTTTATTAAATCGTGTTATTCATTTGGTTGATTCACTTGCCCTCGGACAACAGAAACAAACCGGGGCAACATTAGATGTTCCAGGAGAAAATACCATGAATGAACGAGAGAGTGACAATAGTAATACATTAAATAAAAATGCAAAGGATAATGAAAAATTATTTTCGTCTTTATTATCGGCGTCATCA] [+] EMBL CD149498 [GAGTACGTTTATTAAATCGTGTTATTCATTTGGTTGATTCACTTGCCCTCGGACAACAGAAACAAACCGGGGCAACATTAGATGTTCCAGGAGAAAATACCATGAATGAACGAGAGAGTGACAATAGTAATACATTAAATAAAAATGCAAAGGATAATGAAAAATTATTTTCGTCTTTATTATCGGCGTCATCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3483#0 TACACCTCAATGCTAATCAGAAAACAACTGTTGAAAATAGTA-ATTTATTGAATCAATAC 59 consensus_3483#1 -------------------------------------GAGTACGTTTATTAAATCGT--G 21 **** ****** **** consensus_3483#0 TTATTCACTTGGTGTACTATTGATCCTTCAAATGGAAAGATTATATTATCGACACAACTT 119 consensus_3483#1 TTATTCATTTGGTTGATTCACTTGCCCTCGGACAACAGAAACAAACCGGGG--------- 72 ******* ***** * * ** ** * * * * * * consensus_3483#0 CAACATTAGATGTTCCAGGAGAAAATACCATGAATGAACGAGAGAGTGACAATAGTAATA 179 consensus_3483#1 CAACATTAGATGTTCCAGGAGAAAATACCATGAATGAACGAGAGAGTGACAATAGTAATA 132 ************************************************************ consensus_3483#0 CATTAAATAAAAATGCAAAGGATAATGAAAAATTATTTTCGTCATTATTATCGTCGTCAT 239 consensus_3483#1 CATTAAATAAAAATGCAAAGGATAATGAAAAATTATTTTCGTCTTTATTATCGGCGTCAT 192 ******************************************* ********* ****** consensus_3483#0 CATCATCAACACCTTCACAGACTGTATCGTCTAAATTAAATCTAATTAAAGTTTATGCAG 299 consensus_3483#1 CA---------------------------------------------------------- 194 ** consensus_3483#0 GAGGAACAATGGTTGGATATGCGACTGGACTTGGAACACATGAAGAGTCTGATTGTCAGA 359 consensus_3483#1 ------------------------------------------------------------ consensus_3483#0 ATCATCATTCTTTGAAAGCATCACAGACAACTGTAAATCAATGGAGCTGTTTAATCAAGT 419 consensus_3483#1 ------------------------------------------------------------ consensus_3483#0 TTATTGAACGTGTTATTGTTATTTGTGATCAAATAAATCAGAAGACGAAATCCTCTTCTC 479 consensus_3483#1 ------------------------------------------------------------ consensus_3483#0 CCTCCTCATCATCTTGTAGTAGACAAATTTATGTTCAAGCTGCTCTTCATTCTGGATCAT 539 consensus_3483#1 ------------------------------------------------------------ consensus_3483#0 GTATATTCGGCTTTGTATCCAGTC 563 consensus_3483#1 ------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||