These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3696#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence [TTTCAATTGATTTTTAGTTGGCTTATTTAGACGTTAGACAACTGGTCGATACAACAAAGGCAGTAAAAAAAACGATAAGTTTGGGATTTTATGTATAGGTTATACAAATCAATCATCCAGATTTAAAAGCAAGAATTGCGACCTGTCCAAGGTACAAGTAGATAAAATGTTTGGTTTCATGGGTCACGTAACTGAAAAGGAAGTAAAAACATTGAATCCAACTAACAATAGTCATCAGACGTTTCGAAGACTAAATAACTGGTTTACAGGTTATCTGATAGGTTAATTTTAGAAAAAAAATAGCATATTACCTACTGACAACCTCAACTGGCCCATCATTTTTAAACTTTGATAGTCTAACTAATAACGGTTTTTACAGAACCCGTTAAATAAAATACTAACCAACTGAACGGGAAAATGCTATTGAAACCGGTCTAACACTAGTTTCGTATTACTTTAACTGTCAACCAATCCTAGTCTAGCGAAAACATAGAGAATGGATTAATCCTGTTTAATAACAATGTTTCAAGGTTGAGACAAGGGTAAAACTAAAACATGACCTCTCTTTTAGGTCAAACT] [+] EMBL CD073190 [TTTCAATTGATTTTTAGTTGGCTTATTTAGACGTTAGACAACTGGTCGATACAACAAAGGCAGTAAAAAAAACGATAAGTTTGGGATTTTATGTATAGGTTATACAAATCAATCATCCAGATTTAAAAGCAAGAATTGCGACCTGTCCAAGGTACAAGTAGATAAAATGTTTGGTTTCATGGGTCACGTAACTGAAAAGGAAGTAAAAACATTGAATCCAACTAACAATAGTCATCAGACGTTTCGAAGACTAAATAACTGGTTTACAGGTTATCTGATAGGTTAATTTTAGAAAAAAAATAGCATATTACCTACTGACAACCTCAACTGGCCCATCATTTTTAAACTTTGATAGTCTAACTAATAACGGTTTTTACAGAACCCGTTAAATAAAATACTAACCAACTGAACGGGAAAATGCTATTGAAACCGGTCTAACACTAGTTTCGTATTACTTTAACTGTCAACCAATCCTAGTCTAGCGAAAACATAGAGAATGGATTAATCCTGTTTAATAACAATGTTTCAAGGTTGAGACAAGGGTAAAACTAAAACATGACCTCTCTTTTAGGTCAAACT] consensusID : consensus_3696#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence [ATTGATTTTTAGTTGGCNTATTTAGACGTTAAGACAACTGGTNGATACAACGAAGGCAGTAAAAAAAACGATAAGTNTGGGNNNTTATGTATAGGTTATACCAAATCAATCATCCAGATTTANAAAGCAAGAANTGCGACCTGTCCAAGGTACAAGTAGATAAAATGTTTGGTNTCATGGGTCACGTAGCTGCCAANATTTCTGCCNACTATACAATGCCAGGNTGGNNTGTATCTCTTGTCGCATTCTTTTTTAATAAAAGCAGCAATATCCTTCTCAATGTTATATGTTTCCAAAGCTTCAGCACAAATTTTCACTACTTC] [-] EMBL SM539 [ATTGATTTTTAGTTGGCNTATTTAGACGTTAAGACAACTGGTNGATACAACGAAGGCAGTAAAAAAAACGATAAGTNTGGGNNNTTATGTATAGGTTATACCAAATCAATCATCCAGATTTANAAAGCAAGAANTGCGACCTGTCCAAGGTACAAGTAGATAAAATGTTTGGTNTCATGGGTCACGTAGCTGCCAANATTTCTGCCNACTATACAATGCCAGGNTGGNNTGTATCTCTTGTCGCATTCTTTTTTAATAAAAGCAGCAATATCCTTCTCAATGTTATATGTTTCCAAAGCTTCAGCACAAATTTTCACTACTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3696#0 TTTCAATTGATTTTTAGTTGGCTTATTTAGACGTTA-GACAACTGGTCGATACAACAAAG 59 consensus_3696#1 -----ATTGATTTTTAGTTGGCNTATTTAGACGTTAAGACAACTGGTNGATACAACGAAG 55 ***************** ************* ********** ******** *** consensus_3696#0 GCAGTAAAAAAAACGATAAGTTTGGGATTTTATGTATAGGTTATAC-AAATCAATCATCC 118 consensus_3696#1 GCAGTAAAAAAAACGATAAGTNTGGGNNNTTATGTATAGGTTATACCAAATCAATCATCC 115 ********************* **** ***************** ************* consensus_3696#0 AGATTTAAAA-GCAAGAATTGCGACCTGTCCAAGGTACAAGTAGATAAAATGTTTGGTTT 177 consensus_3696#1 AGATTTANAAAGCAAGAANTGCGACCTGTCCAAGGTACAAGTAGATAAAATGTTTGGTNT 175 ******* ** ******* *************************************** * consensus_3696#0 CATGGGTCACGTAACTGAAAAGGAAGTAAAAACATTGAATCCAACTAACAATAGTCATCA 237 consensus_3696#1 CATGGGTCACGTAGCTGCCAAN---------------ATTTCTGCCNACTATAC------ 214 ************* *** ** * * * * ** *** consensus_3696#0 GACGTTTCGAAGACTAAATAACTGGTTTACAGGTTATCTGATAGGTTAATTTTAGAAAAA 297 consensus_3696#1 ---------AATGCCAGGN---TGGNNTGTATCTCTTGTCGCATTCTTTTTTAATAAAAG 262 ** * * *** * * * * * * * *** * **** consensus_3696#0 AAATAGCATATTACCTACTGACAACCTCAACTGGCCCATCATTTTTAAACTTTGATAGTC 357 consensus_3696#1 CAGCAATATCCTTCTCAATGTTATATGTTTCCAAAGCTTCAGCACAAATTTTCACTACTT 322 * * ** * * * ** * * * *** ** ** ** * consensus_3696#0 TAACTAATAACGGTTTTTACAGAACCCGTTAAATAAAATACTAACCAACTGAACGGGAAA 417 consensus_3696#1 C----------------------------------------------------------- 323 consensus_3696#0 ATGCTATTGAAACCGGTCTAACACTAGTTTCGTATTACTTTAACTGTCAACCAATCCTAG 477 consensus_3696#1 ------------------------------------------------------------ consensus_3696#0 TCTAGCGAAAACATAGAGAATGGATTAATCCTGTTTAATAACAATGTTTCAAGGTTGAGA 537 consensus_3696#1 ------------------------------------------------------------ consensus_3696#0 CAAGGGTAAAACTAAAACATGACCTCTCTTTTAGGTCAAACT 579 consensus_3696#1 ------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||