These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3976#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 402 fasta sequence [ATATGTTTAAAAAAATTTTCAAGTACATTGCTCAGTAATTTCTGTTTCTATGGATTTTTCCAAAGAGCACGTATCTATTTTCCTCTTTTTACGTAACTTTTCCATTTTCTCATCCACAGTAAGTTCCACATGTCTTCTAAATAGCTTCTTAATTACAGTTTTCTTATTAAACGGTTCTAAAGGGTTAATAAATTTAGCCTCTGGAGATATTTCGTCCAAATGATGATTGATTAGTGAGCTATTTGGGATGGTACTTTCAACATAGTTCAACATTCTTCTGACGATAGCTGATCGAATTCCGTATTCTGACCACAATTTCTGATAATGTTTGACCAAATCTAGTCGAGCAGCTTCACTTGTTTCCCAATTTAAACAAGATTCTGGGTAAATGCCAGCATTAAA] [+] EMBL AI975628 [ATATGTTTAAAAAAATTTTCAAGTACATTGCTCAGTAATTTCTGTTTCTATGGATTTTTCCAAAGAGCACGTATCTATTTTCCTCTTTTTACGTAACTTTTCCATTTTCTCATCCACAGTAAGTTCCACATGTCTTCTAAATAGCTTCTTAATTACAGTTTTCTTATTAAACGGTTCTAAAGGGTTAATAAATTTAGCCTCTGGAGATATTTCGTCCAAATGATGATTGATTAGTGAGCTATTTGGGATGGTACTTTCAACATAGTTCAACATTCTTCTGACGATAGCTGATCGAATTCCGTATTCTGACCACAATTTCTGATAATGTTTGACCAAATCTAGTCGAGCAGCTTCACTTGTTTCCCAATTTAAACAAGATTCTGGGTAAATGCCAGCATTAAA] consensusID : consensus_3976#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 308 fasta sequence [TGGTATATGTTTAAGAGAATTTTCAAGTACATTGCTCAGTAATTTCTGTTTCTATGGATTTTTCCAAAGAGCACGTATCTATTTTCCTCTTTTTACGTAACTTTTCCATTTTCTCATCCACAGTAAGTTCCACATGTCTTCTAGATAGCTTCTTAATTACAGTTTTCTTATTAGACGGTTCTAAAGGGTTAATAAATTTAGCCTCTGGAGATATTTCGTCCAAATGATGATTGATTAGTGAGCTATTTGGGATGGTACCTGTAACAAGAAACATATTAGATATGGATGTATGTCGACAAAATTATTTT] [+] EMBL AA999591 [TGGTATATGTTTAAGAGAATTTTCAAGTACATTGCTCAGTAATTTCTGTTTCTATGGATTTTTCCAAAGAGCACGTATCTATTTTCCTCTTTTTACGTAACTTTTCCATTTTCTCATCCACAGTAAGTTCCACATGTCTTCTAGATAGCTTCTTAATTACAGTTTTCTTATTAGACGGTTCTAAAGGGTTAATAAATTTAGCCTCTGGAGATATTTCGTCCAAATGATGATTGATTAGTGAGCTATTTGGGATGGTACCTGTAACAAGAAACATATTAGATATGGATGTATGTCGACAAAATTATTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3976#0 ----ATATGTTTAAAAAAATTTTCAAGTACATTGCTCAGTAATTTCTGTTTCTATGGATT 56 consensus_3976#1 TGGTATATGTTTAAGAGAATTTTCAAGTACATTGCTCAGTAATTTCTGTTTCTATGGATT 60 ********** * ******************************************* consensus_3976#0 TTTCCAAAGAGCACGTATCTATTTTCCTCTTTTTACGTAACTTTTCCATTTTCTCATCCA 116 consensus_3976#1 TTTCCAAAGAGCACGTATCTATTTTCCTCTTTTTACGTAACTTTTCCATTTTCTCATCCA 120 ************************************************************ consensus_3976#0 CAGTAAGTTCCACATGTCTTCTAAATAGCTTCTTAATTACAGTTTTCTTATTAAACGGTT 176 consensus_3976#1 CAGTAAGTTCCACATGTCTTCTAGATAGCTTCTTAATTACAGTTTTCTTATTAGACGGTT 180 *********************** ***************************** ****** consensus_3976#0 CTAAAGGGTTAATAAATTTAGCCTCTGGAGATATTTCGTCCAAATGATGATTGATTAGTG 236 consensus_3976#1 CTAAAGGGTTAATAAATTTAGCCTCTGGAGATATTTCGTCCAAATGATGATTGATTAGTG 240 ************************************************************ consensus_3976#0 AGCTATTTGGGATGGTACTTTCAACATAGTTCAACATTCTTCTGACGATAGCTGATCGAA 296 consensus_3976#1 AGCTATTTGGGATGGTACCTGTAACAAGA---AACATATTAGATATGGATGTATGTCGAC 297 ****************** * **** ***** * * * * **** consensus_3976#0 TTCCGTATTCTGACCACAATTTCTGATAATGTTTGACCAAATCTAGTCGAGCAGCTTCAC 356 consensus_3976#1 AAAATTATTTT------------------------------------------------- 308 **** * consensus_3976#0 TTGTTTCCCAATTTAAACAAGATTCTGGGTAAATGCCAGCATTAAA 402 consensus_3976#1 ---------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||