These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_42#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 544 fasta sequence [AAGAAAACAACAAGAATCTTCTACCGAAAAGTGAAAACTCTATCAAAGAACAGGAAAAATTGAAAATTCTACCACAGCATCCACCATTGGCGATATTGGAAGATTCCATGAACATATCCAATCTTGTGTCAGCATCCCCACTCAGTCATTTTGAAGCGAAAAATAACGTTGACAGAAGGAAGCCTCAAAATATGTCTCCGGGGGACATTAACGCATTCAGAGAAGGTTCAAACATGGCACCTCCAGAGACCTTAAATAAACCATTGTCAATGCATGATAAACTCATTAGTGATCAAATAATTCGGGGAAGGTTTGCCGCAAGCCTAAAAAATGAAATCTGTCAGCCCAAACAGCTTTTAAAGACCTCAATATTTCCACAACTTGAAGTTTTAAATACCAAACATTTAACTGAAGATGACAAAAAGGCACAAAACTATATGTTTACATCAAGTTATCAAGCAGCATACGGAAATAACTCCGGTTTTTACGGGAATACGTACCGACGATTATACCCAATAAGAAGTTCCGAGACTGTTGCAGACCC] [+] EMBL CD118557 [AAGAAAACAACAAGAATCTTCTACCGAAAAGTGAAAACTCTATCAAAGAACAGGAAAAATTGAAAATTCTACCACAGCATCCACCATTGGCGATATTGGAAGATTCCATGAACATATCCAATCTTGTGTCAGCATCCCCACTCAGTCATTTTGAAGCGAAAAATAACGTTGACAGAAGGAAGCCTCAAAATATGTCTCCGGGGGACATTAACGCATTCAGAGAAGGTTCAAACATGGCACCTCCAGAGACCTTAAATAAACCATTGTCAATGCATGATAAACTCATTAGTGATCAAATAATTCGGGGAAGGTTTGCCGCAAGCCTAAAAAATGAAATCTGTCAGCCCAAACAGCTTTTAAAGACCTCAATATTTCCACAACTTGAAGTTTTAAATACCAAACATTTAACTGAAGATGACAAAAAGGCACAAAACTATATGTTTACATCAAGTTATCAAGCAGCATACGGAAATAACTCCGGTTTTTACGGGAATACGTACCGACGATTATACCCAATAAGAAGTTCCGAGACTGTTGCAGACCC] consensusID : consensus_42#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence [GGGGAAGGTTTGCCGCCTAAAAAATGAAATCTGTCAGCCCAAACAGCTTTTAAAGACCTCAATATTTCCACAACTTGTATGTTTTTTCACAAGTCATGTTTTTGCATTCTTTAAAACATTTGACAGGAAGTTTTAAATACCAAACATTTAACTGAAGATGACAAAAAGGCACAAAACTATATGTTTACATCAAGTTATCAAGCGTAATTTCATTCGTAGTACATTGTATTACGTTTATATCAGAGCATACGGAAATAACTCCGGTTTTTACGGGAATACGTACCGACGATTATACCCAATAAGAAGTTCCGAGACTGTTGCAGACCCAATTAGAGGTCTTATGGATAGGGATTCATATTACCCTGCTACCAAGTCATGGATAGTAAGTTCTTATTTGTTACTTAATTCTAGCAAATATGTAATCGTATTCCAAATTCGACTAACTGGATCATCGCCTGCGCTTTTGGAGACTAAG] [-] EMBL CD122864 [GGGGAAGGTTTGCCGCCTAAAAAATGAAATCTGTCAGCCCAAACAGCTTTTAAAGACCTCAATATTTCCACAACTTGTATGTTTTTTCACAAGTCATGTTTTTGCATTCTTTAAAACATTTGACAGGAAGTTTTAAATACCAAACATTTAACTGAAGATGACAAAAAGGCACAAAACTATATGTTTACATCAAGTTATCAAGCGTAATTTCATTCGTAGTACATTGTATTACGTTTATATCAGAGCATACGGAAATAACTCCGGTTTTTACGGGAATACGTACCGACGATTATACCCAATAAGAAGTTCCGAGACTGTTGCAGACCCAATTAGAGGTCTTATGGATAGGGATTCATATTACCCTGCTACCAAGTCATGGATAGTAAGTTCTTATTTGTTACTTAATTCTAGCAAATATGTAATCGTATTCCAAATTCGACTAACTGGATCATCGCCTGCGCTTTTGGAGACTAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_42#0 AAGAAAACAACAAGAATCTTCTACCGAAAAGTGAAAACTCTA---TCAAAGAACAGGAAA 57 consensus_42#1 -------GGGGAAGGTTTGCCGCCTAAAAAATGAAATCTGTCAGCCCAAACAGCTTTTAA 53 *** * * * **** ***** ** * **** * * ** consensus_42#0 AATTGAAAATTCTACCACAGCATCCACCATTGGCGATATTGGAAGATTCCATGAACATAT 117 consensus_42#1 AGACCTCAATATTTCCACAACTTGTATGTTTTTTCACAAGTCATGTTTT--TGCATTCTT 111 * *** * ***** * * * ** * * * * ** ** * * consensus_42#0 CCAATCTTGTGTCAGCATCCCCACTCAGTCATTTTGAAGCGAAAAATAACGTTGACAGAA 177 consensus_42#1 TAAAACATTTGACAGGA-----AGTTTTAAATACCAAACATTTAACTGAAGATGACAAAA 166 ** * * ** *** * * * ** ** ** * * * ***** ** consensus_42#0 GGAAGCCTCAAAATATGTCTCCGGGGGACATTAACGCATTCAGAGAAGGTTCAAACATGG 237 consensus_42#1 AGGCACAAAACTATATGTTT-------ACATCAAGTTATCAAGCGTAATTTCATTCGTAG 219 * * * ****** * **** ** ** ** * * **** * * * consensus_42#0 CACCTCCAGAGACCTTAAATAAACCATTGTCAATGCATGATAAACTCATTAGTGATCAAA 297 consensus_42#1 TACATTGTATTACGTT---TATATCAGAGCATACGGA-AATAACTCCGGTTTTTACGGGA 275 ** * ** ** ** * ** * * * * **** * * * * * consensus_42#0 TAATTCGGGGAAGGTTTGCCGCAAGCCTAAAAAATGAAATC--TGTCAGCCCAA--ACAG 353 consensus_42#1 ATACGTACCGACGATTATACCCAATAAGAAGTTCCGAGACTGTTGCAGACCCAATTAGAG 335 * ** * ** * *** ** ** * ** ***** * ** consensus_42#0 CTTTTAAAGACC----TCAATATTTCCACAACTTGAAGTTTTAAATACCAAACATTTAAC 409 consensus_42#1 GTCTTATGGATAGGGATTCATATTACCCTGCTACCAAGTCATGGATAGTAAGTTCTTATT 395 * *** ** * ***** ** **** * *** ** *** consensus_42#0 TGAAGATGACAAAAAGGCACAAAACTATATGTTTACATCAAGTTATCAAGCAGCATACGG 469 consensus_42#1 TGTTACTTAATTCTAG---CAAATATGTAATCGTATTCCAAATT------CGACTAACTG 446 ** * * ** **** * ** ** *** ** * * ** * consensus_42#0 AAATAACTCCGGTTTTTACGGGAA-TACGTACCGACGATTATACCCAATAAGAAGTTCCG 528 consensus_42#1 GATCATCGCCTGCGCTTTTGGAGACTAAG------------------------------- 475 * * * ** * ** ** * ** * consensus_42#0 AGACTGTTGCAGACCC 544 consensus_42#1 ---------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||