These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4271#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 643 fasta sequence [ATACAAAAATTGCTTAAACTGAATTGTGTGAAACCAGTTCCCGAGTTAAAGGATACTCAAAATACCCCAGTGGTTTCAGATAGTAACTCGAAGGTCACTTGCAATCTTCCGGTCTCTTCAAAAGCATGTATTTCGACCAATGTACGTATCAAGTTGGATGATTTAAAACGGTTTGAAAGCCCTTCAAATCAAGTGATTCAGAAGGGAAACACGCATTTTGATTTAACGAAAAATACACGAGTAGTAACAAGCCCGTCATCCAACCGTCGCACTCTTTTACCTACTCCTGATGGACCAATTGAGAACACCAAGACTTCTTTGTTCAACTTTCATCGTCCGCCTCTCTTAAAAACTCCTTATAAACCAGTGGATGTTCAAGAAGTAATAAGAATAATCGATGACGTTCATATGGTTTTTGTGGATGAGTTGCGAGGAATCATACATCGGGATATAACCCGAAAGCTTGTTGAAGGTCAGGCATCTAAATTATTTTCCGATTGGTGGGATTCAAAAGAACAAGACTGCAGACAAAATCATGCCAGTAGTCATCACAATACTAAAGAGGAGAGTGTGAGTAGTCATTCTGTAGACCATCCANATACATCTCATGATTCTACCGTTCCATCATATCNAAACCAAAGTG] [+] EMBL CD189973 [ATACAAAAATTGCTTAAACTGAATTGTGTGAAACCAGTTCCCGAGTTAAAGGATACTCAAAATACCCCAGTGGTTTCAGATAGTAACTCGAAGGTCACTTGCAATCTTCCGGTCTCTTCAAAAGCATGTATTTCGACCAATGTACGTATCAAGTTGGATGATTTAAAACGGTTTGAAAGCCCTTCAAATCAAGTGATTCAGAAGGGAAACACGCATTTTGATTTAACGAAAAATACACGAGTAGTAACAAGCCCGTCATCCAACCGTCGCACTCTTTTACCTACTCCTGATGGACCA ] [+] EMBL CD116129 [ ACTCGAAGGTCACTTGCAATCTTCCGGTCTCTTCAGAAGCATGTATTTCGACCAATGTACGTATCAAGTTGGATGATTTAAAACGGTTTGAAAGCCCTTCAAATCAAGTGATTCAGAAGGGAAACACGCATTTTGATTCAACGAAAAATACACGAGTAGTAACAAGCCCGTCATCCAACCGTCGCACTCTTTTACCTACTCCTGATGGACCAATTGAGAACACCAAGACTTCTTTGTTCAACTTTCATCGTCCGCCTCTCTTAAAAACTCCTTATAAACCAGTGGATGTTCAAGAAGTAATAAGAATAATCGATGACGTTCATATGGTTTTTGTGGATGAGTTGCGAGGAATCATACATCGGGATATAACCCGAAAGCTTGTTGAAGGTCAGGCATCTAAATTATTTTCCGATTGGTGGGATTCAAAAGAACAAGACTGCAGACAAAATCATGCCAGTAGTCATCACAATACTAAAGAGGAGAGTGTGAGTAGTCATTCTGTAGACCATCCANATACATCTCATGATTCTACCGTTCCATCATATCNAAACCAAAGTG] consensusID : consensus_4271#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence [CTCCAGGCCAANAATTTGGCACGAGGAAAATACACGAGTAGTAACAAGCCCGTCATCCAACCGTCGCACTCTTTTACCTACTCCTGATGGACCAATTGAGAACACCAAGACTTCTTTGTTCAACTTTCATCGTCCGCCTCTCTTAAAAACTCCTTATAAACCAGTGGATGTTCAAGAAGTAATAAGAATAATCGATGACGTTCATATGGTTTTTGTGGATGAGTTGCGAGGAATCATACATCGGGATATAACCCGAAAGCTTGTTGAAGGTCAGGCATTTAAATTATTTTCCGATTGGTGGGATTCAAAAGAACAAGACTGCAGACAAAATCATGCCAGTAGTCATCACAATACTAAAGAGGAGAGTGTGAGTAGTCATTCTGTAGACCATCCAAATACATCTCATGATTCTACCGTTCCATCATATCAAAACCAAAGTGTTAGTGGGAACATGTCTAATTCCTCATTTGCTCCTACTTCAGTTTCTTCTAGTATTCCTGTGTCAACCATGTCTGACAGTAACTCCGTATCTTCAAACTNTAAACTTTTTGGTTTGGGTATGTTTACAACCTTAAGATCTGCTNTACCAAAAATTAAACGCAAACCTCGTCCACCAAGTC] [+] EMBL CD081072 [CTCCAGGCCAANAATTTGGCACGAGGAAAATACACGAGTAGTAACAAGCCCGTCATCCAACCGTCGCACTCTTTTACCTACTCCTGATGGACCAATTGAGAACACCAAGACTTCTTTGTTCAACTTTCATCGTCCGCCTCTCTTAAAAACTCCTTATAAACCAGTGGATGTTCAAGAAGTAATAAGAATAATCGATGACGTTCATATGGTTTTTGTGGATGAGTTGCGAGGAATCATACATCGGGATATAACCCGAAAGCTTGTTGAAGGTCAGGCATTTAAATTATTTTCCGATTGGTGGGATTCAAAAGAACAAGACTGCAGACAAAATCATGCCAGTAGTCATCACAATACTAAAGAGGAGAGTGTGAGTAGTCATTCTGTAGACCATCCAAATACATCTCATGATTCTACCGTTCCATCATATCAAAACCAAAGTGTTAGTGGGAACATGTCTAATTCCTCATTTGCTCCTACTTCAGTTTCTTCTAGTATTCCTGTGTCAACCATGTCTGACAGTAACTCCGTATCTTCAAACTNTAAACTTTTTGGTTTGGGTATGTTTACAACCTTAAGATCTGCTNTACCAAAAATTAAACGCAAACCTCGTCCACCAAGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4271#0 ATACAAAAATTGCTTAAACTGAATTGTGTGAAACCAGTTCCCGAGTTAAAGGATACTCAA 60 consensus_4271#1 ------------------------------------------------------------ consensus_4271#0 AATACCCCAGTGGTTTCAGATAGTAACTCGAAGGTCACTTGCAATCTTCCGGTCTCTTCA 120 consensus_4271#1 ------------------------------------------------------------ consensus_4271#0 AAAGCATGTATTTCGACCAATGTACGTATCAAGTTGGATGATTTAAAACGGTTTGAAAGC 180 consensus_4271#1 ------------------------------------------------------------ consensus_4271#0 CCTTCAAATCAAGTGATTCAGAAGGGAAACACGCATTTTGATTTAACGAAAAATACACGA 240 consensus_4271#1 ----------------------CTCCAGGCCAANAATTTGGCACGA-GGAAAATACACGA 37 * * * **** * * *********** consensus_4271#0 GTAGTAACAAGCCCGTCATCCAACCGTCGCACTCTTTTACCTACTCCTGATGGACCAATT 300 consensus_4271#1 GTAGTAACAAGCCCGTCATCCAACCGTCGCACTCTTTTACCTACTCCTGATGGACCAATT 97 ************************************************************ consensus_4271#0 GAGAACACCAAGACTTCTTTGTTCAACTTTCATCGTCCGCCTCTCTTAAAAACTCCTTAT 360 consensus_4271#1 GAGAACACCAAGACTTCTTTGTTCAACTTTCATCGTCCGCCTCTCTTAAAAACTCCTTAT 157 ************************************************************ consensus_4271#0 AAACCAGTGGATGTTCAAGAAGTAATAAGAATAATCGATGACGTTCATATGGTTTTTGTG 420 consensus_4271#1 AAACCAGTGGATGTTCAAGAAGTAATAAGAATAATCGATGACGTTCATATGGTTTTTGTG 217 ************************************************************ consensus_4271#0 GATGAGTTGCGAGGAATCATACATCGGGATATAACCCGAAAGCTTGTTGAAGGTCAGGCA 480 consensus_4271#1 GATGAGTTGCGAGGAATCATACATCGGGATATAACCCGAAAGCTTGTTGAAGGTCAGGCA 277 ************************************************************ consensus_4271#0 TCTAAATTATTTTCCGATTGGTGGGATTCAAAAGAACAAGACTGCAGACAAAATCATGCC 540 consensus_4271#1 TTTAAATTATTTTCCGATTGGTGGGATTCAAAAGAACAAGACTGCAGACAAAATCATGCC 337 * ********************************************************** consensus_4271#0 AGTAGTCATCACAATACTAAAGAGGAGAGTGTGAGTAGTCATTCTGTAGACCATCCANAT 600 consensus_4271#1 AGTAGTCATCACAATACTAAAGAGGAGAGTGTGAGTAGTCATTCTGTAGACCATCCAAAT 397 ********************************************************* ** consensus_4271#0 ACATCTCATGATTCTACCGTTCCATCATATCNAAACCAAAGTG----------------- 643 consensus_4271#1 ACATCTCATGATTCTACCGTTCCATCATATCAAAACCAAAGTGTTAGTGGGAACATGTCT 457 ******************************* *********** consensus_4271#0 ------------------------------------------------------------ consensus_4271#1 AATTCCTCATTTGCTCCTACTTCAGTTTCTTCTAGTATTCCTGTGTCAACCATGTCTGAC 517 consensus_4271#0 ------------------------------------------------------------ consensus_4271#1 AGTAACTCCGTATCTTCAAACTNTAAACTTTTTGGTTTGGGTATGTTTACAACCTTAAGA 577 consensus_4271#0 ------------------------------------------- consensus_4271#1 TCTGCTNTACCAAAAATTAAACGCAAACCTCGTCCACCAAGTC 620 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||