These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4530#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence [CCATTGAAAATGCACTTCTACCTACTTTAATTACTTATTTAGAAAATCATGAAGAATCAGAGAGTGGAGATATTGAAGCATCCTTGAAAGTATTTGGTGTGTTAATCAGTCCATCAGAATTTGGAATTAGTTCCAGTTTGATTCAACGAGTATTTCCAGCTGTTGTACATATCGCTATCACAAGTACAGATTCTGTAGTGATTTCAGAATGCTGTGATGTGATACGCTGTTATCTAGCAGCCGGTTCTTCACAAATTCTTGAATGGCATGATGATGAAGGCAATAATGGAGTTGGGTACATACTCCATGTAACTTCTCGTTTACTGGATCCCTCGAACCCAGTTGAATGGGCTACACCAGCTGGTAAATTAGCTTATGCTATTCTACTTCACTTTGATGCTCAGCAGTTGAGAGAAAATACAGATTTGTTATTACGTGGTGTACTAGCTCGTCTGTGTACATTAATAGGTCAACAGGCTAAAGTACTGATCGATGTACCAATTATTGGTAGTATGTACAAATTGTTATTANACGAATTAGACCCAGAACTAGAAGAGGAGACAGAATGTGACGATGAAGGCGACGA] [+] EMBL CD154244 [CCATTGAAAATGCACTTCTACCTACTTTAATTACTTATTTAGAAAATCATGAAGAATCAGAGAGTGGAGATATTGAAGCATCCTTGAAAGTATTTGGTGTGTTAATCAGTCCATCAGAATTTGGAATTAGTTCCAGTTTGATTCAACGAGTATTTCCAGCTGTTGTACATATCGCTATCACAAGTACAGATTCTGTAGTGATTTCAGAATGCTGTGATGTGATACGCTGTTATCTAGCAGCCGGTTCTTCACAAATTCTTGAATGGCATGATGATGAAGGCAATAATGGAGTTGGGTACATACTCCATGTAACTTCTCGTTTACTGGATCCCTCGAACCCAGTTGAATGGGCTACACCAGCTGGTAAATTAGCTTATGCTATTCTACTTCACTTTGATGCTCAGCAGTTGAGAGAAAATACAGATTTGTTATTACGTGGTGTACTAGCTCGTCTGTGTACATTAATAGGTCAACAGGCTAAAGTACTGATCGATGTACCAATTATTGGTAGTATGTACAAATTGTTATTANACGAATTAGACCCAGAACTAGAAGAGGAGACAGAATGTGACGATGAAGGCGACGA] consensusID : consensus_4530#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 571 fasta sequence [CGGTTCTTCACAAATTCTTGAATGGCATGATGATGAAGGCAATAATGGAGTTGGGTACATACTCCATGTAACTTCTCGTTTACTGGATCCCTCGAACCCAGTTGAATGGGCTACACCAGCTGGTAAATTAGCTTATGCTATTCTACTTCACTTTGATGCTCAGCAGTTGAGAGAAAATACAGATTTGTTATTACGTGGTGTACTAGCTCGTCTGTGTACATTAATAGGTAATAATCACAAACAATCTTCACAGTTAGTATATAATGATCAACAAAAGGGTATGCATGGAGCCAGACAAAGCTTACTGTTTGTCATAATCTTGTTGTTTCGTATACGAACTAAATTGGCTATTGATTTCTTGTCAACTATACCAGACTTATCTGGAAAGCCTATACTACAAGAAATATTATCAATATGGTGTAATTGTCAACCGTATTATTTTTCACGTTATGAAATTCAAGTTAGTACCATGGCATTGGCTAATTTGATACTGCACACAATCAATACAAAAGATGCACGTATTATGCAAATAACACTTCAAGAAGAAATGGACAATAATGATTCTATTCAA] [+] EMBL CD153426 [CGGTTCTTCACAAATTCTTGAATGGCATGATGATGAAGGCAATAATGGAGTTGGGTACATACTCCATGTAACTTCTCGTTTACTGGATCCCTCGAACCCAGTTGAATGGGCTACACCAGCTGGTAAATTAGCTTATGCTATTCTACTTCACTTTGATGCTCAGCAGTTGAGAGAAAATACAGATTTGTTATTACGTGGTGTACTAGCTCGTCTGTGTACATTAATAGGTAATAATCACAAACAATCTTCACAGTTAGTATATAATGATCAACAAAAGGGTATGCATGGAGCCAGACAAAGCTTACTGTTTGTCATAATCTTGTTGTTTCGTATACGAACTAAATTGGCTATTGATTTCTTGTCAACTATACCAGACTTATCTGGAAAGCCTATACTACAAGAAATATTATCAATATGGTGTAATTGTCAACCGTATTATTTTTCACGTTATGAAATTCAAGTTAGTACCATGGCATTGGCTAATTTGATACTGCACACAATCAATACAAAAGATGCACGTATTATGCAAATAACACTTCAAGAAGAAATGGACAATAATGATTCTATTCAA] consensusID : consensus_4530#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 440 fasta sequence [GGTACATACTCCATGTACTTCTCGTTTACTGGATCCCTCGAACCCAGTTGAATGGGCTACACCAGCTGGTAAATTAGCTTATGCTATTCTACTTCACTTTGATGCTCAGCAGTTGAGAGAAAATACAGATTTGTTATTACGTGGTGTACTAGCTCGTCTGTGTACATTAATAGTACCATGGCATTGGCTAATTTGATACTGCACACAATCAATACAAAAGATGCACGTATTGTGCAAATAACACTTCAAGAAGAAATGGACAATAATGATTCTATTCAAACCAGATCGAAATCTAGCTAAAGTACTGATCGATGTACCAATTATTGTTAGTATGTACAAATTGTTATTAAACGAATTAGACAAGAAACTAGAAGAGGAGACAGAATGTGACGATGAAGGCGACGACAGTGAATTCGACGACAATGATGATGATGATGATG] [-] EMBL CD121468 [GGTACATACTCCATGTACTTCTCGTTTACTGGATCCCTCGAACCCAGTTGAATGGGCTACACCAGCTGGTAAATTAGCTTATGCTATTCTACTTCACTTTGATGCTCAGCAGTTGAGAGAAAATACAGATTTGTTATTACGTGGTGTACTAGCTCGTCTGTGTACATTAATAGTACCATGGCATTGGCTAATTTGATACTGCACACAATCAATACAAAAGATGCACGTATTGTGCAAATAACACTTCAAGAAGAAATGGACAATAATGATTCTATTCAAACCAGATCGAAATCTAGCTAAAGTACTGATCGATGTACCAATTATTGTTAGTATGTACAAATTGTTATTAAACGAATTAGACAAGAAACTAGAAGAGGAGACAGAATGTGACGATGAAGGCGACGACAGTGAATTCGACGACAATGATGATGATGATGATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4530#0 CCATTGAAAATGCACTTCTACCTACTTTAATTACTTATTTAGAAAATCATGAAGAATCAG 60 consensus_4530#2 ------------------------------------------------------------ consensus_4530#1 ------------------------------------------------------------ consensus_4530#0 AGAGTGGAGATATTGAAGCATCCTTGAAAGTATTTGGTGTGTTAATCAGTCCATCAGAAT 120 consensus_4530#2 ------------------------------------------------------------ consensus_4530#1 --------------------------------------------------------CGGT 4 consensus_4530#0 TTGGAATTAGTTCCAGTTTGATTCAACGAGTATTTCCAGCTGTTGTACATATCGCTATCA 180 consensus_4530#2 -------------------------------------------------GGTACATACTC 11 consensus_4530#1 TCTTCACAAATTCTTGAATGGCATGATGATGAAGGCAATAATGGAGTTGGGTACATACTC 64 * ** consensus_4530#0 CAAGTA-CAGATTCTGTAGTGATTTCAGAATGCTGTGATGTGATACGCTGTTATCTAGCA 239 consensus_4530#2 CATGTA-CTTCTCGTTTACTGGATCCCTCGAACCCAGTTG-AATGGGCTAC--ACCAGCT 67 consensus_4530#1 CATGTAACTTCTCGTTTACTGGATCCCTCGAACCCAGTTG-AATGGGCTAC--ACCAGCT 121 ** *** * * * ** ** * * * * ** ** *** * *** consensus_4530#0 GCCGGTTCTTCACAAATTCTTGAATGGCATGATGATGAAGGCAATAATGGAGTTGGG-TA 298 consensus_4530#2 GGTAAATTAGCTTATGCTATTCTACTTCACTTTGATGCT--CAGCAGTTGAGAGAAAATA 125 consensus_4530#1 GGTAAATTAGCTTATGCTATTCTACTTCACTTTGATGCT--CAGCAGTTGAGAGAAAATA 179 * * * * * ** * ** ***** ** * * *** ** consensus_4530#0 CATACTCCATGTAACTTCTCGTTTACTGGATCCCTCGAACCCAGTTGAATGGGCTACACC 358 consensus_4530#2 CAGATTTGTTATTACGT--GGTGTACTAGCTCGTCTGTGTACA-TTAATAGTACCATGGC 182 consensus_4530#1 CAGATTTGTTATTACGT--GGTGTACTAGCTCGTCTGTGTACA-TTAATAGGTAATAATC 236 ** * * * * ** * ** **** * ** * ** ** * * * consensus_4530#0 AGCTGGTAAATTAGCTTATGCTATTCTACTTCACTTTGATGCTCAGCAGTTGAGAGAAAA 418 consensus_4530#2 A-TTGGCTAATTTG---ATACTGCACACAATCAATACAAAAGATGCACGTATTGTGCAAA 238 consensus_4530#1 A--CAAACAATCTTCACAGTTAGTATATAATGATCAACAAAAGGGTATGCATGGAGCCAG 294 * *** * * * * * * * * consensus_4530#0 TACAGATTTGTTATTACGTGGTGTACTAGCTCGTC-TGTGTACATTAATAGGTCAACAGG 477 consensus_4530#2 TAACACTTCAAGAAGAAATGG-ACAATAATGATTC-TATTCAAACCAGATCGAAATCTAG 296 consensus_4530#1 ACAAAGCTTACTGTTTGTCATAATCTTGTTGTTTCGTATACGAACTAAATTGGCTATTGA 354 * * ** * * * * * consensus_4530#0 CTAA-----AGTACTGATCGATGTACCAATTATTGGTAGTATGTACAAATTGTTATTANA 532 consensus_4530#2 CTAA-----AGTACTGATCGATGTACCAATTATTGTTAGTATGTACAAATTGTTATTAAA 351 consensus_4530#1 TTTCTTGTCAACTATACCAGACTTATCTGGAAAGCCTATACTACAAGAAATATTATCAAT 414 * * * ** ** * * ** * * ** * **** * consensus_4530#0 CGAATTAGACCCAGAACTAGAAGAGGAGACAGAATGTGACGATGAAGGCGACGA------ 586 consensus_4530#2 CGAATTAGACAAGAAACTAGAAGAGGAGACAGAATGTGACGATGAAGGCGACGACAGTGA 411 consensus_4530#1 ATGGTGTAATTGTCAACCGTATTATTTTTCACGTTATGA-AATTCAAGTTAGTACCATGG 473 * * *** * * ** * *** ** * * * * consensus_4530#0 ------------------------------------------------------------ consensus_4530#2 ATTCGACGACAATGATGATGATGATGATG------------------------------- 440 consensus_4530#1 CATTGGCTAATTTGATACTGCACACAATCAATACAAAAGATGCACGTATTATGCAAATAA 533 consensus_4530#0 -------------------------------------- consensus_4530#2 -------------------------------------- consensus_4530#1 CACTTCAAGAAGAAATGGACAATAATGATTCTATTCAA 571 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||