These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4642#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 738 fasta sequence [GGGGTTAGCGACCCCATCCCGTAGAAAAACTAACGCTAAGAAAACGCTAACCAGAAAAAAAATAACTCAAACCGTTTAAACTCTGCCCTGGGAGTTGAAGGAATAATTATGACGCCTCATGATGAAAGCCGAGATTTTTCGGAAGTCACGAGGCCGATGCACCTTCTAACAACCAGAGCAACACTCCTTATAGGTACATGGAACGTTCATCAATATCTACAGACAAAACGTCCTAGTTGACAATAACCGCTGTTTAATTATGTTCGACCCTGTCGATGTTTTAGCACTACGGGAAATCATTTTCGGCATTAATAGTCCACCGCTAACTCTCCCACTGTTGAACAGAGCGATAAGACATCAAAGATAGCAAAAGGAAAGTGGTTCAATCAGAATTGCAGGAAACTTTCACTGATGAGTGCTTGCATGCAGAAAACTTAAACCAGTCAATGTCTATAGACTCTTTAGAACTAACTAACAACAAACGACATACATACATATGTGTTAGCAATCTACATTTCATAAAAAATAAAGCATGAGTAAATGTATACGTGTATTTAATTTAACCAGTATTTGTTTATCTATTATGAAAACTACTTTACTAAGTAAACACGTTAATTGCTAATGTTTAACTNTAATACACCCTGAATGTGTTTAATTTATNTGNGACTATTNGTTTATGATAACTTAAAGATNTCATGAAATC-TGTAAGCGAAATCATAAGTTAAATAAACAGTCGTA] [+] EMBL CD086883 [GGGGTTAGCGACCCCATCCCGTAGAAAAACTAACGCTAAGAAAACGCTAACCAGAAAAAAAATAACTCAAACCGTTTAAACTCTGCCCTGGGAGTTGAAGGAATAATTATGACGCCTCATGATGAAAGCCGAGATTTTTCGGAAGTCACGAGGCCGATGCACCTTCTAACAACCAGAGCAACACTCCTTATAGGTACATGGAACGTTCATCAATATCTACAGACAAAACGTCCTAGTTGACAATAACCGCTGTTTAATTATGTTCGACCCTGTCGATGTTTTAGCACTACGGGAAATCATTTTCGGCATTAATAGTCCACCGCTAACTCTCCCACTGTTGAACAGAGCGATAAGACATCAAAGATAGCAAAAGGAAAGTGGTTCAATCAGAATTGCAGGAAACTTTCACTGATGAGTGCTTGCATGCAGAAAACTTAAACCAGTCAATGTCTATAGACTCTTTAGAACTAACTAACAACAAACGACATACATACATATGTGTTAGCAATCTACATTTCATAAAAAATAAAGCATGAGTAAATGTATACGTGTATTTAATTTAACCAGTATTTGTTTATCTATTATGAAAACTACTTTACTAAGTAAACACGTTAATTGCTAATGTTTAACTNTAATACACCCTGAATGTGTTTAATTTATNTGNGACTATTNGTTTATGATAACTTAAAGATNTCATGAAATC TGTAAGCGAAATCATAAGTTAAATAAACAGTCG ] [-] EMBL CD086872 [ TCGGAAGTCACGAGGCCGATGCACCTTCTAACAACCAGAGCAACACTCTTTATAGGTACATGGAACGTTCATCAATATCTACAGACAAAACGTCCTAGTTGACAATAACCGCTGTTTAATTATGTTCGACCCTGTCGATGTTTTAGCACTACGGGAAATCATTTTCGGCATTAATAGTCCACCGCTAACTCTCCCACTGTTGAACAGAGCGATAAGACATCAAAGATAGCAAAAGGAAAGTGGTTCAATCAGAATTGCAGAAAACTTTCACTGATGAGTGCTTGCATGCAGAAAACTTAAACCAGTCAATGTCTATAGACTCTTTAGAACTAACTAACAACAAACGACATACATACATATGTGTTAGCAATCTACATTTCATAAAAAATAAAGCATGAGTAAATGTATACGTGTATTTAATATAACCAGTATTTGTTTATCTATTATGAAAACTACTTTACTAAGTAAACACGTTAATTGCTAATGTTTAACTTTAATACACCCTGAATGTGTTTAATTTATTTGTGACTATTGTTTTACGATAACTTAAAGATTTCATG AATCTTGTAAGCGAAATCATAAGTTAAATAAACAGTCGTA] consensusID : consensus_4642#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence [ATTTGTCAACTCGACTTCACTTGACTTTAGCCGTGTCACACATTTCGTACATGAGTTACAGAGAGTAACAGCTTCAACTGTACACGTCACACAGATAAGATGCTTCTGATCTAGCATATCAATCATCTAGATTTCATATGTGAACTGTTCTCGCTCGATGAGCCGGTTTTATACTACAGTATAATCTCCATCAAGGCAGGAGCGGTTGGGNCATGGGAGTTAGNCGACCCACATCCCAGTAGAAATAGCCAANCTCGTCCAGAAAAAACGCTACACCAGTATAAAATAATTCATAACCATTTAAACNTCTGCCGTCCGTGCCTGTAGAAGAATAATTATGATCGTCTCATGATGAAAGCCGAAATTCTTCGGAAGTCACGAGACCGATGCACCTTCTAACAACCAGAGCAACACTCTTTATAGGTACATGGAACGTCCG] [+] EMBL CD163486 [ATTTGTCAACTCGACTTCACTTGACTTTAGCCGTGTCACACATTTCGTACATGAGTTACAGAGAGTAACAGCTTCAACTGTACACGTCACACAGATAAGATGCTTCTGATCTAGCATATCAATCATCTAGATTTCATATGTGAACTGTTCTCGCTCGATGAGCCGGTTTTATACTACAGTATAATCTCCATCAAGGCAGGAGCGGTTGGGNCATGGGAGTTAGNCGACCCACATCCCAGTAGAAATAGCCAANCTCGTCCAGAAAAAACGCTACACCAGTATAAAATAATTCATAACCATTTAAACNTCTGCCGTCCGTGCCTGTAGAAGAATAATTATGATCGTCTCATGATGAAAGCCGAAATTCTTCGGAAGTCACGAGACCGATGCACCTTCTAACAACCAGAGCAACACTCTTTATAGGTACATGGAACGTCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4642#0 GGGGTTAGCGACCCCATCCCGTAGAAAAACTAACGCTAAGAAAACGCTAACCAGAAAAAA 60 consensus_4642#1 ------------------------------------------------------------ consensus_4642#0 AATAACTCAAACCGTTTAAACTCTGCCCTGGGAGTTGAAGGAATAATTATGACGCCTCAT 120 consensus_4642#1 -ATTTGTCAACTCGACTTCACTTGACTTTAGCCGTGTCACACATTTCGTACATGAGTTAC 59 ** **** ** * *** * * * ** * ** * * * * consensus_4642#0 GATGAAAGCCGAGATTTTTCGGAAGTCACGAGGCCGATGCACCTTCTAACAACCAGAGCA 180 consensus_4642#1 AGAGAGTAAC-AGCTTCAACTGTACACGTCACACAGATAAGATGCTTCTGATCTAGCATA 118 ** * ** ** * * * * * * *** * * * ** * consensus_4642#0 ACACTCCTTATAGGTACATGGAACGTTCATCAATATCTACAGACAAAACGTCCTAGTTGA 240 consensus_4642#1 TCAATCATCTAGATTTCAT---ATGTGAACTGTTCTCGCTCGATGAGCCGGTTTTAT--A 173 ** ** * * *** * ** * * ** ** * ** * * * consensus_4642#0 CAATAACCGCTGTTTAATTATGTTCGACCCTGTCGATGTTTTAGCACTACGGGAAATCAT 300 consensus_4642#1 CTACAGTATAATCTCCATCAAGGCAGGAGCGGTTGGGNCATGGGAGTTAGNCGACCCACA 233 * * * * ** * * * * ** * * * ** ** consensus_4642#0 TTTCGGCATTAATAGTCCACCGCTAACTCTCCCACTGTTGAACAGAGCGATAAGACATCA 360 consensus_4642#1 TCCCAGTAGAAATAGCCAANCTCGTCCAGAAAAAACGCTACAC----CAGTATAAAATAA 289 * * * * ***** * * * * * * * * ** * ** * ** * consensus_4642#0 AAGATAGCAAAAGGAAAGTGGTTCAATCAGAATTGCAGGAAACTTTCACTGATGAGTGCT 420 consensus_4642#1 TTCATAACCATTTAAACNTCTGCCGTCCGTGCCTGTAGAAGAAT---AATTATGATCGTC 346 *** * * ** * * * ** ** * * * * * **** * consensus_4642#0 TGCATGCAGAAAACTTAAACCAGTCAATGTCTATAGACTCTTTAGAACTAACTAACAACA 480 consensus_4642#1 T-CATGATGAAAGCCGAAATTCTTCGGAAGTCACGAGACCGAT-GCACCTTCTAACAACC 404 * **** **** * *** ** * * * * ** ******** consensus_4642#0 AACGACATACA-TACATATGTGTTAGCAATCTACATTTCATAAAAAATAAAGCATGAGTA 539 consensus_4642#1 AGAGCAACACTCTTTATAGGTACATGGAACGTCCG------------------------- 439 * * * ** * *** ** * ** * * consensus_4642#0 AATGTATACGTGTATTTAATTTAACCAGTATTTGTTTATCTATTATGAAAACTACTTTAC 599 consensus_4642#1 ------------------------------------------------------------ consensus_4642#0 TAAGTAAACACGTTAATTGCTAATGTTTAACTNTAATACACCCTGAATGTGTTTAATTTA 659 consensus_4642#1 ------------------------------------------------------------ consensus_4642#0 TNTGNGACTATTNGTTTATGATAACTTAAAGATNTCATGAAATCTGTAAGCGAAATCATA 719 consensus_4642#1 ------------------------------------------------------------ consensus_4642#0 AGTTAAATAAACAGTCGTA 738 consensus_4642#1 ------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||