These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4650#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 560 fasta sequence [CGTGCGCAGACTTGAGCAACTGTCACGCAAGGCGCGCCAGACGCAGATCTTCATCGAAACGCCGTACCGGAATCAGGCGATGCTCGACAACGCTGGTCGCGACCTGCGCGCCGTCGACGCAAGATCTGCGTCCCGGCCCGATCCTGACCCTCGCGACCGAGACGATCGCGAGCCGAACCGTGACCGACTTGGAAAAAGGCGCCTGCGC-NAATCTGCACAAGCGCCCCGCCAATCTTCCTGCTGCTCGCGAACTGAAGCCGAAACCGGCGAACCGGTGACGCGAGGCGGGCCATTGCGGCCCGCCTTGCAAGGTCAAGCGCAGGCTCCGANTTGCGCCGCCGGCCGTCAGCGCCTTCATCGCGGCGCCGCCACGGCCGCGCGAACTTGCGCGCGACACGGTTCGTCAGGCTTTCCTTCACCGTGTAGTCGACGAGATCGGGCGCCTTCAGCACGTCGCGGGCAGCCGTATCGGTNTGCCCGTAGCCGTCCGCGAGTCCGAGCTCGACGTTCTTCTCGCCGGTCCAGAACAGGCCCGAGAACATGTCGGGCGTCTCGTGCAG] [+] EMBL SM127 [CGTGCGCAGACTTGAGCAACTGTCACGCAAGGCGCGCCAGACGCAGATCTTCATCGAAACGCCGTACCGGAATCAGGCGATGCTCGACAACGCTGGTCGCGACCTGCGCGCCGTCGACGCAAGATCTGCGTCCCGGCCCGATCCTGACCCTCGCGACCGAGACGATCGCGAGCCGAACCGTGACCGACTTGGAAAAAGGCGCCTGCGC NAATCTGCACAAGCGCCCCGCCAATCTTCCTGCTGCTCGCGAACTGAAGCCGAAACCGGCGAACCGGTGACGCGAGGCGGGCCATTGCGGCCCGCCTTGCAAGGTCAAGCGCAGGCTCCGANTTGCGCCGCCGGCCGTCAGCGCCTTCATCGCGGCGCCGCCACGGCCGCGCGAACTTGCGCGCGACACGGTTCGTCAGGCTTTCCTTCACCGTGTAGTCGACGAGATCGGGCGCCTTCAGCACGTCGCGGGCAGCCGTATCGGTNTGCCCGTAGCCGTCCGCGAGTCCGAGCTCGACGTTCTTCTCGCCGGTCCAGAACAGGCCCGAGAACATGTCGGGCGTCTCGTGCAG] [+] EMBL SMW754 [ TTGAGCAACTGTCACGCAAGGCGCGCCAGACGCAGATCTTCATCGAAACGCCGTACCGGAATCAGGCGATGCTCGAC ACGCTGGTCGCGACCTGCGCGCCGTCGACGC AGATCTGCGTCNCNG CCGAT CTGACCCTCGCGACCGAGACGATCGCGAGCCGCACCGTGACCGAC TGGAAAAAGGCGCCTGCGCGAAATCTGCACAAGCGCCCCGCC ] consensusID : consensus_4650#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 278 fasta sequence [CGGCCCGCNGCCTGCAGGCAAGCGCAGGCTGACCGATGCGCCGCCGGCCGTCAGCGCCTTCAATCGGGCGCCGCCGACGGCCGCGCCGAACTTGCGCGCGACACGGTTCGTCAGGCTTTCCTTCACCGTGTAGTCGACGAGATCGGGCGCCTTCAGCACGTCGCGGGGCACCGTATCGGTCGTGCCGTAGCCGTCCGCGAAGTCCGAGCTCGACGCTCTTCTCGCCGGTCCANAACAGCCCGAGAACATGTCGGCAGTCTCGTGCACTTGCCGCGGCC] [-] EMBL SM128 [CGGCCCGCNGCCTGCAGGCAAGCGCAGGCTGACCGATGCGCCGCCGGCCGTCAGCGCCTTCAATCGGGCGCCGCCGACGGCCGCGCCGAACTTGCGCGCGACACGGTTCGTCAGGCTTTCCTTCACCGTGTAGTCGACGAGATCGGGCGCCTTCAGCACGTCGCGGGGCACCGTATCGGTCGTGCCGTAGCCGTCCGCGAAGTCCGAGCTCGACGCTCTTCTCGCCGGTCCANAACAGCCCGAGAACATGTCGGCAGTCTCGTGCACTTGCCGCGGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4650#0 CGTGCGCAGACTTGAGCAACTGTCACGCAAGGCGCGCCAGACGCAGATCTTCATCGAAAC 60 consensus_4650#1 ------------------------------------------------------------ consensus_4650#0 GCCGTACCGGAATCAGGCGATGCTCGACAACGCTGGTCGCGACCTGCGCGCCGTCGACGC 120 consensus_4650#1 ------------------------------------------------------------ consensus_4650#0 AAGATCTGCGTCCCGGCCCGATCCTGACCCTCGCGACCGAGACGATCGCGAGCCGAACCG 180 consensus_4650#1 ------------------------------------------------------------ consensus_4650#0 TGACCGACTTGGAAAAAGGCGCCTGCGCNAATCTGCACAAGCGCCCCGCCAATCTTCCTG 240 consensus_4650#1 ------------------------------------------------------------ consensus_4650#0 CTGCTCGCGAACTGAAGCCGAAACCGGCGAACCGGTGACGCGAGGCGGGCCATTGCGGCC 300 consensus_4650#1 -------------------------------------------------------CGGCC 5 ***** consensus_4650#0 CGCCTTGCAAGGTCAAGCGCAGGCTCCGANTTGCGCCGCCGGCCGTCAGCGCCTTCATCG 360 consensus_4650#1 CGCNGCCTGCAGGCAAGCGCAGGCTGACCGATGCGCCGCCGGCCGTCAGCGCCTTCAATC 65 *** * ************ ************************** consensus_4650#0 CGGCGCCGCC-ACGGCCGCGC-GAACTTGCGCGCGACACGGTTCGTCAGGCTTTCCTTCA 418 consensus_4650#1 GGGCGCCGCCGACGGCCGCGCCGAACTTGCGCGCGACACGGTTCGTCAGGCTTTCCTTCA 125 ********* ********** ************************************** consensus_4650#0 CCGTGTAGTCGACGAGATCGGGCGCCTTCAGCACGTCGCGGGCAGCCGTATCGGTNTGCC 478 consensus_4650#1 CCGTGTAGTCGACGAGATCGGGCGCCTTCAGCACGTCGCGGGGCACCGTATCGGTCGTGC 185 ****************************************** ********** * consensus_4650#0 CGTAGCCGTCCGCGA-GTCCGAGCTCGACGTTCTTCTCGCCGGTCCAGAACAGGCCCGAG 537 consensus_4650#1 CGTAGCCGTCCGCGAAGTCCGAGCTCGACGCTCTTCTCGCCGGTCCANAACAG-CCCGAG 244 *************** ************** **************** ***** ****** consensus_4650#0 AACATGTCGGGCGTCTCGTGCAG----------- 560 consensus_4650#1 AACATGTCGGCAGTCTCGTGCACTTGCCGCGGCC 278 ********** ********** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||