These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4901#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 892 fasta sequence [TCCGTCACAACTGCATCTGTCTGGGATGATGATGACGACTCGGCGATTCCTGTCCCAACTGCTTCAGAGGAAATTCCTGAAATTTCTACTGAAGATCAGGTCGGGGAGCACACTGAAGTGACCGCTCACCTAAACGATGTCGAAGACTCTCAAGACGTGTTTACTATTAGTATGTCTAGGTAGGGATCACTTTTATCCAGTTACTGAGTCATATTTTATAAGCATATTAGCTGGTCTGCAATTCAACACAAACTCCAAAATGTGTGCTCACTCTTCAACATAGTAATGTGGCTGTTTGCCTACTTTACCGCTGTAAATTTTCGGCAAAGTTCTGGAGCATTGAATAAAATCGAATATGCTTAGATTGCTATAGCAAAATAGGTTCAGACTTATCTAAATATTTATGCTCAATTTGTTAACACTCTTAGCTACTTTTTTGTTTGAGTAAACATTCTACTATTTGCACTCAACTTATCGACTTTTCTGTAAGCTGTTAAAAAAGAAGTTCGTTTAACCGTAACGCATTAGTGGTAGAAGTCTTTCGTTGACTTAAGTTACATTAAGTGTGTTGACAATTATAGATTACGATTACCTCGAAATTC-AAATCATAAAATCTGAACTTCAAGGTGGTTCGGACAGCCAGTGGCTTCATAGGCTGGCGCTGTATCTTGGTCTGGATGCTTCTAGCATTTCCGTAGAAATTTTTTACCCCGTCAAACATAGCATGTCAGGGTCAGATGTGGCTAAATAAACCCTTAAACATGTAAAACTGAGGTGTATATTTTTATTAACCGACTCTACTTATCACACTACGCATAAAATCAGCATTGTCGCACGTAAATAACAACTTGAAGATATTAATGTCCAAATATTTGCAGTCTACACCTGTCCG] [+] EMBL CD161093 [TCCGTCACAACTGCATCTGTCTGGGATGATGATGACGACTCGGCGATTCCTGTCCCAACTGCTTCAGAGGAAATTCCTGAAATTTCTACTGAAGATCAGGTCGGGGAGCACACTGAAGTGACCGCTCACCTAAACGATGTCGAAGACTCTCAAGACGTGTTTACTATTAGTATGTCTAGGTAGGGATCACTTTTATCCAGTTACTGAGTCATATTTTATAAGCATATTAGCTGGTCTGCAATTCAACACAAACTCCAAAATGTGTGCTCACTCTTCAACATAGTAATGTGGCTGTTTGCCTACTTTACCGCTGTAAATTTTCGGCAAAGTTCTGGAGCATTGAATAAAATCGAATATGCTTAGATTGCTATAGCAAAATAGGTTCAGACTTATCTAAATATTTATGCTCAATTTGTTAACACTCTTAGCTACTTTTTTGTTTGAGTAAACATTCTACTATTTGCACTCAACTTATCGACTTTTCTGTAAGCTGTTAAAAAAGAAGTTCGTTTAACCGTAACGCATTAGTGGTAGAAGTCTTTCGTTGACTTAAGTTACATTAAGTGTGTTGACAATTATAGATTACGATTACCTCGAAATTC AAATCATAAAATCTGAACTTCAAGGTGG ] [-] EMBL CD161350 [ TAATGTGGCTGTTTGCCTACTTTACCGCTGTAAATTTTCGGCAAAGTTCTGGAGCATTGAATAAAATCGAATATGCTTAGATTGCTATAGCAAAATAGGTTCAGACTTATCTAAATATTTATGCTCAATTTGTTAACACTCTTAGCTACTTTTTTGTTTGAGTAAACATTCTACTATTTGCACTCAACTTATCGACTTTTCTGTAAGCTGTTAAAAAAGAAGTTCGTTTAACCGTAACGCATTAGTGGTAGAAGTCTTTCGTTGACTTAAGTTACATTAAGTGTGTTGACAATTATAGATTACGATTACCTCGAAATTCAAAATCATAAAATCTGAACTTCAATGTGGTTCGGACAGCCAGTGGCTTCATAGGCTGGCGCTGTATCTTGGTCTGGATGCTTCTAGCATTTCCGTAGAAATTTTTTACCCCGTCAAACATAGCATGTCAGGGTCAGATGTGGCTAAATAAACCCTTAAACATGTAAAACTGAGGTGTATATTTTTATTAACCGACTCTACTTATCACACTACGCATAAAATCAGCATTGTCGCACGTAAATAACAACTTGAAGATATTAATGTCCAAATATTTGCAGTCTACACCTGTCCG] consensusID : consensus_4901#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 194 fasta sequence [GATGTCGAAGACTCTCAAGACGTGTTTACTATTAGTATGTCTAGGGTTTTATTGCTTGAGAATATGGTAGGCGTTAATGAAGTGGACGACGAACTACAAGAGGAAGTAATGGAGGAGTGTGGAAATTACGGTTCTGTCCTACGTGTTTTGATTCATATAATGACAAGTCAGGATGTTCGTATCTTTATTCAGTT] [+] EMBL CD192305 [GATGTCGAAGACTCTCAAGACGTGTTTACTATTAGTATGTCTAGGGTTTTATTGCTTGAGAATATGGTAGGCGTTAATGAAGTGGACGACGAACTACAAGAGGAAGTAATGGAGGAGTGTGGAAATTACGGTTCTGTCCTACGTGTTTTGATTCATATAATGACAAGTCAGGATGTTCGTATCTTTATTCAGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4901#0 TCCGTCACAACTGCATCTGTCTGGGATGATGATGACGACTCGGCGATTCCTGTCCCAACT 60 consensus_4901#1 ------------------------------------------------------------ consensus_4901#0 GCTTCAGAGGAAATTCCTGAAATTTCTACTGAAGATCAGGTCGGGGAGCACACTGAAGTG 120 consensus_4901#1 ------------------------------------------------------------ consensus_4901#0 ACCGCTCACCTAAACGATGTCGAAGACTCTCAAGACGTGTTTACTATTAGTATGTCTAGG 180 consensus_4901#1 ---------------GATGTCGAAGACTCTCAAGACGTGTTTACTATTAGTATGTCTAGG 45 ********************************************* consensus_4901#0 TAGGGATCACTTTTATCCAGTTACTGAGTCATATTTTATAAGCATATTAGCTGGTCTGCA 240 consensus_4901#1 G---------TTTTAT-----TGCTTGAGAATATGGTAGGCGTTAATGAAGTGGACGACG 91 ****** * ** **** ** * ** * *** * * consensus_4901#0 A--TTCAACACAAACTCCAAAATGTGTGCTCACTCTTCAACATAGTAATGTGGCTGTTTG 298 consensus_4901#1 AACTACAAGAGGAAGTAATGGAGGAGTGTGGAAATTACGGTTCTGTCCTACG--TGTTT- 148 * * *** * ** * * * *** * * * ** * * ***** consensus_4901#0 CCTACTTTACCGCTGTAAATTTTCGGCAAAGTTCTGGAGCATTGAATAAAATCGAATATG 358 consensus_4901#1 --TGATTCA----TATAATGACAAGTCAGGATGTTCGTATCTTTATTCAGTT-------- 194 * ** * * *** * ** * * * ** * * * * consensus_4901#0 CTTAGATTGCTATAGCAAAATAGGTTCAGACTTATCTAAATATTTATGCTCAATTTGTTA 418 consensus_4901#1 ------------------------------------------------------------ consensus_4901#0 ACACTCTTAGCTACTTTTTTGTTTGAGTAAACATTCTACTATTTGCACTCAACTTATCGA 478 consensus_4901#1 ------------------------------------------------------------ consensus_4901#0 CTTTTCTGTAAGCTGTTAAAAAAGAAGTTCGTTTAACCGTAACGCATTAGTGGTAGAAGT 538 consensus_4901#1 ------------------------------------------------------------ consensus_4901#0 CTTTCGTTGACTTAAGTTACATTAAGTGTGTTGACAATTATAGATTACGATTACCTCGAA 598 consensus_4901#1 ------------------------------------------------------------ consensus_4901#0 ATTCAAATCATAAAATCTGAACTTCAAGGTGGTTCGGACAGCCAGTGGCTTCATAGGCTG 658 consensus_4901#1 ------------------------------------------------------------ consensus_4901#0 GCGCTGTATCTTGGTCTGGATGCTTCTAGCATTTCCGTAGAAATTTTTTACCCCGTCAAA 718 consensus_4901#1 ------------------------------------------------------------ consensus_4901#0 CATAGCATGTCAGGGTCAGATGTGGCTAAATAAACCCTTAAACATGTAAAACTGAGGTGT 778 consensus_4901#1 ------------------------------------------------------------ consensus_4901#0 ATATTTTTATTAACCGACTCTACTTATCACACTACGCATAAAATCAGCATTGTCGCACGT 838 consensus_4901#1 ------------------------------------------------------------ consensus_4901#0 AAATAACAACTTGAAGATATTAATGTCCAAATATTTGCAGTCTACACCTGTCCG 892 consensus_4901#1 ------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||