These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4979#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 409 fasta sequence [AAGTTGAGGAGAATAGAAAGGGAAATAGAAAGAAATTGCAGACATGAAGAATCATACAGAATGTGAAGGACAAATGATGGAAATTCGCAAATGAAGTATTCAATGTATGGTTCTCATATTTTACAAAGACATTCTGTAGTTTGGTAGTAAAAATACATTTGGACGTCCCCATCTGAGTATTCGTTCATTACAGTCCTAATACACACACGCAATTTTTATGAGACATTTGTGATCAGAAAATTGTAACCCAGGAAAGTCCTCTACCTATAAAGATCAACTATGGGTTCCTGTCTCTGTCACAGAGGCCAAATCAGGTCAAAGTCGTAGAAATAAAACTAAAAGATTCCAACGTGAGCTAGTAAAAGAAGGATACTACTGAAGAGTGTAAGTATTTGTCCCTCAATTATAT] [+] EMBL CD160313 [AAGTTGAGGAGAATAGAAAGGGAAATAGAAAGAAATTGCAGACATGAAGAATCATACAGAATGTGAAGGACAAATGATGGAAATTCGCAAATGAAGTATTCAATGTATGGTTCTCATATTTTACAAAGACATTCTGTAGTTTGGTAGTAAAAATACATTTGGACGTCCCCATCTGAGTATTCGTTCATTACAGTCCTAATACACACACGCAATTTTTATGAGACATTTGTGATCAGAAAATTGTAACCCAGGAAAGTCCTCTACCTATAAAGATCAACTATGGGTTCCTGTCTCTGTCACAGAGGCCAAATCAGGTCAAAGTCGTAGAAATAAAACTAAAAGATTCCAACGTGAGCTAGTAAAAGAAGGATACTACTGAAGAGTGTAAGTATTTGTCCCTCAATTATAT] [+] EMBL CD160324 [AAGTTGAGGAGAATAGAAAGGGAAATAGAAAGAAATTGCAAACATGAAGAATCATACAGAATGTGAAGGACAAATGATGGAAATTCGCAAATGAAGTATTCAATGTATGGTTCTCATATTTTACAAAGACATTCTGTAGTTTTGTAGTAAAAATACATTTGGACGTCCCCATCTGAGTATTCGTTCATTACAGTCCTAATACACACACGCAATTTTTATGAGACATTTGTGATCAGAAAATTGTAACCCAGGAAAGTCCTCTACCTATAAAGATCAACTATGGGTTCCTGTCTCTGTCACAGAGGCCAAATCAGGTCAAAGTCGTAGAAATAAAACTAAAAG ] consensusID : consensus_4979#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 94 fasta sequence [GAATGTGAAGGATAAATGATGGAAACTCGCAAATGAAGTATTCAATGTATGGTTCTCATATTTTGTCAAGAAATTCTGTGGTAAAACGGACACG] [+] EMBL AW626395 [GAATGTGAAGGATAAATGATGGAAACTCGCAAATGAAGTATTCAATGTATGGTTCTCATATTTTGTCAAGAAATTCTGTGGTAAAACGGACACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4979#0 AAGTTGAGGAGAATAGAAAGGGAAATAGAAAGAAATTGCAGACATGAAGAATCATACAGA 60 consensus_4979#1 ----------------------------------------------------------GA 2 ** consensus_4979#0 ATGTGAAGGACAAATGATGGAAATTCGCAAATGAAGTATTCAATGTATGGTTCTCATATT 120 consensus_4979#1 ATGTGAAGGATAAATGATGGAAACTCGCAAATGAAGTATTCAATGTATGGTTCTCATATT 62 ********** ************ ************************************ consensus_4979#0 TTACAAAGACATTCTGTAGTTTGGTAGTAAAAATACATTTGGACGTCCCCATCTGAGTAT 180 consensus_4979#1 TTGTCAAGAAATTCTGT-----GGTAAAACGGACACG----------------------- 94 ** **** ******* **** * * ** consensus_4979#0 TCGTTCATTACAGTCCTAATACACACACGCAATTTTTATGAGACATTTGTGATCAGAAAA 240 consensus_4979#1 ------------------------------------------------------------ consensus_4979#0 TTGTAACCCAGGAAAGTCCTCTACCTATAAAGATCAACTATGGGTTCCTGTCTCTGTCAC 300 consensus_4979#1 ------------------------------------------------------------ consensus_4979#0 AGAGGCCAAATCAGGTCAAAGTCGTAGAAATAAAACTAAAAGATTCCAACGTGAGCTAGT 360 consensus_4979#1 ------------------------------------------------------------ consensus_4979#0 AAAAGAAGGATACTACTGAAGAGTGTAAGTATTTGTCCCTCAATTATAT 409 consensus_4979#1 ------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||