These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5165#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 345 fasta sequence [AAATTGTATTATATTAACAAAATCTAACAATTATAAGTCTGTACAACAGAGAATTACAACTAAGCAAATGACTAGTTTTCAACGAGGCCATGGATCAACCCTATGTGTGCGTATAA-CAAGTGAAATTTTTCTTGACATCTCAAAGTCATACACACGTTTACACCGTTCATACATATATCTTCGTCTCCAATCAGTTGGTTTTTCATAACGTTGTTGAAAATTGACCGTACTCCTTACCTTATCAACATTTATTATCATTGTCCTTATTTGCCTCATTTTTTCACTTTTTTCTAGTAAGTACTGACAATGCATTAAAAGGGGGTATTTTCTGAACTGATCACAGTG] [+] EMBL CD072958 [AAATTGTATTATATTAACAAAATCTAACAATTATAAGTCTGTACAACAGAGAATTACAACTAAGCAAATGACTAGTTTTCAACGAGGCCATGGATCAACCCTATGTGTGCGTATAA CAAGTGAAATTTTTCTTGACATCTCAAAGTCATACACACGTTTACACCGTTCATACATATATCTTCGTCTCCAATCAGTTGGTTTTTCATAACGTTGTTGAAAATTGACCGTACTCCTTACCTTATCAACATTTATTATCATTGTCCTTATTTGCCTCATTTTTTCACTTTTTTCTAGTAAGTACTGACAATGCATTAAAAGGGGGTATTTTCTGAACTGATCACAGTG] [-] EMBL AA559492 [ AATTGTATTATATTAACAAAATNTAACAATTATAAGTCTGTACAACAGAGNATTACAACTAAGCAAATGACTAGTTTTCAACGAGGCCATGGANCAACCCTATGTGTGCGTATAANCAAGTGAAATTTTTCTTGACAANTCAGAGTCATACACACGTTTACACCGTTCATACATATAATTATGNCTCCAATCAGTTGGTTTTTCATAACGT ] consensusID : consensus_5165#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 309 fasta sequence [AAGCAAATGACTAGTTTTCAACGAGGCCATGGATCAACCCTATGTGTGCGTATAACAAGTGAAATTTTTCTTGACATCTCAGAGTCATACACACGTTTACACCGTTCATACATATATCTTCGTCTCCAATCAGTTGGTTTTTCATAACGTTGTTGAAAATTGACCGTACTCCTTACCTTATCAACATTTATTATCTTATTAATCGACCTGAAAGCCCCGTTATAGTCATCATTGTTAACTATTATAGTTTTTTTCAAAAATCGAAAGTTCTTGAAGAAAGTATCCACTGGTAATGATGACTTTGACATA] [-] EMBL CD145152 [AAGCAAATGACTAGTTTTCAACGAGGCCATGGATCAACCCTATGTGTGCGTATAACAAGTGAAATTTTTCTTGACATCTCAGAGTCATACACACGTTTACACCGTTCATACATATATCTTCGTCTCCAATCAGTTGGTTTTTCATAACGTTGTTGAAAATTGACCGTACTCCTTACCTTATCAACATTTATTATCTTATTAATCGACCTGAAAGCCCCGTTATAGTCATCATTGTTAACTATTATAGTTTTTTTCAAAAATCGAAAGTTCTTGAAGAAAGTATCCACTGGTAATGATGACTTTGACATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5165#0 AAATTGTATTATATTAACAAAATCTAACAATTATAAGTCTGTACAACAGAGAATTACAAC 60 consensus_5165#1 ------------------------------------------------------------ consensus_5165#0 TAAGCAAATGACTAGTTTTCAACGAGGCCATGGATCAACCCTATGTGTGCGTATAACAAG 120 consensus_5165#1 -AAGCAAATGACTAGTTTTCAACGAGGCCATGGATCAACCCTATGTGTGCGTATAACAAG 59 *********************************************************** consensus_5165#0 TGAAATTTTTCTTGACATCTCAAAGTCATACACACGTTTACACCGTTCATACATATATCT 180 consensus_5165#1 TGAAATTTTTCTTGACATCTCAGAGTCATACACACGTTTACACCGTTCATACATATATCT 119 ********************** ************************************* consensus_5165#0 TCGTCTCCAATCAGTTGGTTTTTCATAACGTTGTTGAAAATTGACCGTACTCCTTACCTT 240 consensus_5165#1 TCGTCTCCAATCAGTTGGTTTTTCATAACGTTGTTGAAAATTGACCGTACTCCTTACCTT 179 ************************************************************ consensus_5165#0 ATCAACATTTATTATC--ATTGTCC---TTATTTGCCTCATT----TTTTCACTTTT--- 288 consensus_5165#1 ATCAACATTTATTATCTTATTAATCGACCTGAAAGCCCCGTTATAGTCATCATTGTTAAC 239 **************** *** * * *** * ** * *** * ** consensus_5165#0 --TTCTAGTAAGTACTGACAAT-----GCATTAAAAGGGGGTATTTTCTGA-ACTGATCA 340 consensus_5165#1 TATTATAGTTTTTTTCAAAAATCGAAAGTTCTTGAAGAAAGTATCCACTGGTAATGATGA 299 ** **** * * *** * * *** **** *** * **** * consensus_5165#0 CAGTG----- 345 consensus_5165#1 CTTTGACATA 309 * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||