These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_523#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 464 fasta sequence [TGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGATTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGATACAG] [+] EMBL CD194801 [TGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGATTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGATACAG] consensusID : consensus_523#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 213 fasta sequence [GCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTACTGTTATTAACAATGGATATTGTGGGTGTTTTTGTGGGTTTTGAGACTACGGGCAGCGGAGTTGGTTGAGTTGAGGTAGATCTAGTGGTATTTGCAGCTAGGGGACTAGTCACAGATTTGCCAGTTCTACGAGGAGTTCTGT] [+] EMBL CD185625 [GCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTACTGTTATTAACAATGGATATTGTGGGTGTTTTTGTGGGTTTTGAGACTACGGGCAGCGGAGTTGGTTGAGTTGAGGTAGATCTAGTGGTATTTGCAGCTAGGGGACTAGTCACAGATTTGCCAGTTCTACGAGGAGTTCTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_523#0 TGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGACAAGAGTGGTT 60 consensus_523#1 ------------------------GCCACCGCCGCCGCCACAAAAACTATACTCCCGTCT 36 * * * * * * * * consensus_523#0 GGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACT 120 consensus_523#1 AGTCAGTACACTCCA--ATTCAAAA--ATACACTCGCTACTGTTATTAACAATGGATATT 92 ** * * ** * ** * * * * * * ** * * * * * consensus_523#0 GTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGT 180 consensus_523#1 GTGGGTGTTTTTGTGGGTTTTGAGAC-TACGGGCAGCGGAGT---TGGTTGAGTTGAGGT 148 *** * * ** * **** * * ** **** * **** *** ** consensus_523#0 GTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGACAAGAGTGGTTGGTTGATGAGT 240 consensus_523#1 AGAT---CTAG---------TGGTATTTGCAGCTAGGGGACTAGTCACAGATTTGCCAGT 196 * **** * ** **** ** * * *** * ** *** consensus_523#0 TTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTG 300 consensus_523#1 TCTACGAG-GAGTTCTGT------------------------------------------ 213 * * *** ** * ** consensus_523#0 TAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAG 360 consensus_523#1 ------------------------------------------------------------ consensus_523#0 ACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAT 420 consensus_523#1 ------------------------------------------------------------ consensus_523#0 TTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGATACAG 464 consensus_523#1 -------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||