These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5906#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 486 fasta sequence [TAAAGAATTAAAAAAACAAAAAATGGAATATAATAATGAATTAACCAAGACTCAACGTGAACTTCAAACGCAAACTGATGAAACAAAAGACAAATTGACTCATACACAACAACTTTTAATTGAGAAAACAAGTCAGCTTGAAAATGCAGCCAACCAATTGAATAATGTACGACAATATTGTTCTGAACTTGAACAACGTATTAATGAAATGTCACAACGATTAAATATGGCTGAATCACATACTCAACAACAAGCAGAAGAATCTCGTACTTTAGTAGATAATTTAAAAAATGATATAAAGAATCTTACAAATGAGATAGAACAATTCAAGGAACAAATTAAAGAGTTAGAAAAACAAAAAATGGAATATAATAATGAATTAACCAAGACTCAACGTGAACTTCAAACGTAAACTGATGAAACAAAAGACAAATTGACTCATACACAACAACTTTTAATTGAGAAAACAAGTCAGCTTGAAAATGC] [+] EMBL CD065001 [TAAAGAATTAAAAAAACAAAAAATGGAATATAATAATGAATTAACCAAGACTCAACGTGAACTTCAAACGCAAACTGATGAAACAAAAGACAAATTGACTCATACACAACAACTTTTAATTGAGAAAACAAGTCAGCTTGAAAATGCAGCCAACCAATTGAATAATGTACGACAATATTGTTCTGAACTTGAACAACGTATTAATGAAATGTCACAACGATTAAATATGGCTGAATCACATACTCAACAACAAGCAGAAGAATCTCGTACTTTAGTAGATAATTTAAAAAATGATATAAAGAATCTTACAAATGAGATAGAACAATTCAAGGAACAAATTAAAGAGTTAGAAAAACAAAAAATGGAATATAATAATGAATTAACCAAGACTCAACGTGAACTTCAAACGTAAACTGATGAAACAAAAGACAAATTGACTCATACACAACAACTTTTAATTGAGAAAACAAGTCAGCTTGAAAATGC] [+] EMBL CD065025 [TAAAGAATTAAAAAAACAAAAAATGGAATATAATAATGAATTAACCAAGACTCAACGTGAACTTCAAACGCAAACTGATGAAACAAAAGACAAATTGACTCATACACAACAACTTTTAATTGAGAAAACAAGTCAGCTTGAAAATGCAGCCAACCAATTGAATAATGTACGACAATATTGTTCTGAACTTGAACAACGTATTAATGAAATGTCACAACGATTAAATATGGCTGAATCACATACTCAACAACAAGCAGAAGAATCTCGTAGTTTAGTAGATAATTTAAAAAATGATATAAAGAATCTTACAAATGAGATAGAACAATTCAAGGAACAAATTAAAGAGTTAGAAAAACAAAACATGGAATATAATAATGAATTAACCAAGACTCAACGTGAACTTCAAACGTAAACTGATGAAACAAAAGACAAATTGACTCATACACAACAACTTTTAATTGCGAAAACAAGTCAG ] consensusID : consensus_5906#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 83 fasta sequence [TTTAAAAAATGATATAAAGATTCTTACAAATGAGATAGAACATTTCAGGGAACAATTTAAAGATTTAGAAAACCAAAAAATGG] [+] EMBL CD183026 [TTTAAAAAATGATATAAAGATTCTTACAAATGAGATAGAACATTTCAGGGAACAATTTAAAGATTTAGAAAACCAAAAAATGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5906#0 TAAAGAATTAAAAAAACAAAAAATGGAATATAATAATGAATTAACCAAGACTCAACGTGA 60 consensus_5906#1 ------------------------------------------------------------ consensus_5906#0 ACTTCAAACGCAAACTGATGAAACAAAAGACAAATTGACTCATACACAACAACTTTTAAT 120 consensus_5906#1 ------------------------------------------------------------ consensus_5906#0 TGAGAAAACAAGTCAGCTTGAAAATGCAGCCAACCAATTGAATAATGTACGACAATATTG 180 consensus_5906#1 ------------------------------------------------------------ consensus_5906#0 TTCTGAACTTGAACAACGTATTAATGAAATGTCACAACGATTAAATATGGCTGAATCACA 240 consensus_5906#1 ------------------------------------------------------------ consensus_5906#0 TACTCAACAACAAGCAGAAGAATCTCGTACTTTAGTAGATAATTTAAAAAATGATATAAA 300 consensus_5906#1 ------------------------------------------TTTAAAAAATGATATAAA 18 ****************** consensus_5906#0 GAATCTTACAAATGAGATAGAACAATTCAAGGAACAAATTAAAGAGTTAGAAAAACAAAA 360 consensus_5906#1 GATTCTTACAAATGAGATAGAACATTTCAGGGAACAATTTAAAGATTTAGAAAACCAAAA 78 ** ********************* **** ******* ******* ******** ***** consensus_5906#0 AATGGAATATAATAATGAATTAACCAAGACTCAACGTGAACTTCAAACGTAAACTGATGA 420 consensus_5906#1 AATGG------------------------------------------------------- 83 ***** consensus_5906#0 AACAAAAGACAAATTGACTCATACACAACAACTTTTAATTGAGAAAACAAGTCAGCTTGA 480 consensus_5906#1 ------------------------------------------------------------ consensus_5906#0 AAATGC 486 consensus_5906#1 ------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||