These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6029#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence [TGACTATTAGGAATAAGACCAACTTTAGGTGATTGAGATAAACTTGGACGAATGATTTTTGTTTGTGTTCCCGTAGGATTTGGTATTACTGTGAGAACTGGTTTAGACACGGCCGTTGAAGAAATAGATAGTGGTGAATTGTCATTAGCACCGTGTAGTGAATGTTGTCCAGAGTTAATATGAGATAATTCACTAGTTGTACCCGATGGATTAATAACTGTGAGGCAACCAGAACTAGATGTTCGAATAAGAACAGCGTTTGGGCTAGATGTGGCCACGTAAACGCCGTCCTGTTGACAGCCTGGTTTAATAGATGTAGATGATCCCATCGTTTGAGAACTGATTATTGATTGCCGTGAAAGAGATTGATCAGCAGATGATAATGAAGTTATTTGTGAAGTATTTTGTGACTGGGGTTGTTGGAATATGAGAACCGGTTGTTGTCCAGATCCTG] [+] EMBL CD197466 [TGACTATTAGGAATAAGACCAACTTTAGGTGATTGAGATAAACTTGGACGAATGATTTTTGTTTGTGTTCCCGTAGGATTTGGTATTACTGTGAGAACTGGTTTAGACACGGCCGTTGAAGAAATAGATAGTGGTGAATTGTCATTAGCACCGTGTAGTGAATGTTGTCCAGAGTTAATATGAGATAATTCACTAGTTGTACCCGATGGATTAATAACTGTGAGGCAACCAGAACTAGATGTTCGAATAAGAACAGCGTTTGGGCTAGATGTGGCCACGTAAACGCCGTCCTGTTGACAGCCTGGTTTAATAGATGTAGATGATCCCATCGTTTGAGAACTGATTATTGATTGCCGTGAAAGAGATTGATCAGCAGATGATAATGAAGTTATTTGTGAAGTATTTTGTGACTGGGGTTGTTGGAATATGAGAACCGGTTGTTGTCCAGATCCTG] consensusID : consensus_6029#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 372 fasta sequence [TTACCATGATCATCATTACAATCTTATTATTAATTGACATTAGATGCTGAAATTTTTAATTTTATTTCAATAAAAAAGCTCTTTCATACAATTTTGTTATTCACAAAGAAAGAAATCAAGGTCAACAATAAACTCATTTGGATAATGAATTTGGTTTTAAATTGGTTAATTAACTGCACTAAGAGCACCTACCACGAATACGTCGTCCAGATAGACGTTCGTGAACGCCGTCCTGTTGACAGCCTGGTTTAATAGATGTAGATGATCCCATCGTTTGAGAACTGATTATTGATTGCCGTGAAAGAGATTGATCAGCAGATGATAATGAAGTTATTTGTGAAGTATTTTGTGACTGGGGTTGTTGGAATATGA] [+] EMBL CD113644 [TTACCATGATCATCATTACAATCTTATTATTAATTGACATTAGATGCTGAAATTTTTAATTTTATTTCAATAAAAAAGCTCTTTCATACAATTTTGTTATTCACAAAGAAAGAAATCAAGGTCAACAATAAACTCATTTGGATAATGAATTTGGTTTTAAATTGGTTAATTAACTGCACTAAGAGCACCTACCACGAATACGTCGTCCAGATAGACGTTCGTGAACGCCGTCCTGTTGACAGCCTGGTTTAATAGATGTAGATGATCCCATCGTTTGAGAACTGATTATTGATTGCCGTGAAAGAGATTGATCAGCAGATGATAATGAAGTTATTTGTGAAGTATTTTGTGACTGGGGTTGTTGGAATATGA] consensusID : consensus_6029#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 357 fasta sequence [CTGTTTTGTGAGTACTATGAGGAATAAGACCAACTTTAGGTGATTGAGATAAACTTGGACGAATGATTTTTGTTTGTGTTCCCGTAGGATTTGGTATTACTGTGAGAACTGGTTTAGACACGGCCGTTGAAGAAATAGATAGTGGTGAATTGTCATTAGCACCGTGTAGTGAATGTTGTCCAGAGTTAATATGAGATAATTCACTAGTTGTACCCGATGGATTAATAACTGTGAGGCAACCAGAACTAGATGTTCGAATAAGAACAGCGTTTGGGCTAGATGTGGAACATGGTCAATTGCCACATCCTAATCGTATTGCTACATCCGCTTCTCTGCTTGGATCATCTACCCAAAGTA] [-] EMBL CD153021 [CTGTTTTGTGAGTACTATGAGGAATAAGACCAACTTTAGGTGATTGAGATAAACTTGGACGAATGATTTTTGTTTGTGTTCCCGTAGGATTTGGTATTACTGTGAGAACTGGTTTAGACACGGCCGTTGAAGAAATAGATAGTGGTGAATTGTCATTAGCACCGTGTAGTGAATGTTGTCCAGAGTTAATATGAGATAATTCACTAGTTGTACCCGATGGATTAATAACTGTGAGGCAACCAGAACTAGATGTTCGAATAAGAACAGCGTTTGGGCTAGATGTGGAACATGGTCAATTGCCACATCCTAATCGTATTGCTACATCCGCTTCTCTGCTTGGATCATCTACCCAAAGTA] consensusID : consensus_6029#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 276 fasta sequence [GACGAGAATAAGCCTGATCTTGTAACATACGGACAGATATCCTCTCGAATTCTGTAGCTAATAACTGTAAACTACCATAAAATCCTGTTGGTTCAGTATTACTTTGGGTAGATGATCCAAGCAAAGAAGCGGATGTATCAATACAATTAGGATGTGGCAATTGACCATGTTCCACAACTGGTGCCTGATACAGCTGGTAATGTTTTGGTTGAAATATCAGGACTTTGAGTGCTTGACATACTGAGATTTATACCAGCTGGTGAGAAATGAGTGGGT] [+] EMBL CD149006 [GACGAGAATAAGCCTGATCTTGTAACATACGGACAGATATCCTCTCGAATTCTGTAGCTAATAACTGTAAACTACCATAAAATCCTGTTGGTTCAGTATTACTTTGGGTAGATGATCCAAGCAAAGAAGCGGATGTATCAATACAATTAGGATGTGGCAATTGACCATGTTCCACAACTGGTGCCTGATACAGCTGGTAATGTTTTGGTTGAAATATCAGGACTTTGAGTGCTTGACATACTGAGATTTATACCAGCTGGTGAGAAATGAGTGGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6029#0 -----------TGACTATTAGGAATAAGACCAACTTTAGGTGATTGAGATAAACTTGGAC 49 consensus_6029#2 CTGTTTTGTGAGTACTATGAGGAATAAGACCAACTTTAGGTGATTGAGATAAACTTGGAC 60 consensus_6029#1 -------------------------------------------------------TTACC 5 consensus_6029#3 ------------------------------------------------------------ consensus_6029#0 GAATGATTTTTGTTTGTGTTCCCGTAGGATTTGGTATTAC-TGTGAGAACTGGTTTAGAC 108 consensus_6029#2 GAATGATTTTTGTTTGTGTTCCCGTAGGATTTGGTATTAC-TGTGAGAACTGGTTTAGAC 119 consensus_6029#1 --ATGATCATCATTACAATCTTATTATTAATTGACATTAGATGCTGAAATTTTTAATTTT 63 consensus_6029#3 ------------------------------------------------------------ consensus_6029#0 ACGGCCGTTGAAGAAATAGATAGTGGTGAATTGTCATTAGCACCGTGTAGTGAATGTTGT 168 consensus_6029#2 ACGGCCGTTGAAGAAATAGATAGTGGTGAATTGTCATTAGCACCGTGTAGTGAATGTTGT 179 consensus_6029#1 ATTTCAATAAAAAAGCTCTTTCATACAATTTTGTTATT--CACAAAGAAAGAAAT----- 116 consensus_6029#3 ---GACGAGAATAAGCCTGATCTTGTAACATACGGACAGATATCCTCT--CGAAT----T 51 * * * * * * * *** consensus_6029#0 CCAGAGTTAATA-TGAGATAATTCACTAGTTGTACCCGATGGATTAATAACTGTGAGGCA 227 consensus_6029#2 CCAGAGTTAATA-TGAGATAATTCACTAGTTGTACCCGATGGATTAATAACTGTGAGGCA 238 consensus_6029#1 -CAAGGTCAACAATAAACTCATTTGGATAATGAATT---TGGTTTTAAATTGGTTAATTA 172 consensus_6029#3 CTGTAGCTAATA--ACTGTAAACTACCATAAAATCCTGTTGGTTCAGTATTACTTTGGGT 109 * ** * * * *** * * * consensus_6029#0 ACCAGAACTAGATGTTCGAATAAGAACAGCGTTTGGGCTAGATGTGGCCACGTAAACGCC 287 consensus_6029#2 ACCAGAACTAGATGTTCGAATAAGAACAGCGTTTGGGCTAGATGTGGA-ACATGGTCAAT 297 consensus_6029#1 ACTGCACTAAGAGCACCTACCACGAATA-CGTC--GTCCAGATAGACGTTCGTGAACGCC 229 consensus_6029#3 AGATGATCCAAGCAAAGAAGCGGATGTATCAATACAATTAGGATGTGGCAATTGACCATG 169 * * * * * * ** * * consensus_6029#0 GTCC-TGTTGACAGCCTGGTTTAATAGATGTAGATGATCCCATCGTTTGAGAACTGATTA 346 consensus_6029#2 TGCC------ACATCCTAATCGTATTGCTACATCCGCTTCTCTGCTTGGATCATCTACCC 351 consensus_6029#1 GTCC-TGTTGACAGCCTGGTTTAATAGATGTAGATGATCCCATCGTTTGAGAACTGATTA 288 consensus_6029#3 TTCCACAACTGGTGCCTGATACAGCTGGTAATGTTTTGGTTGAAATATCAGGACTT-TGA 228 ** *** * * * * * * consensus_6029#0 TTGATTGCCGTGAAAGAGATTGAT--CAGCAGATGATAATGAAGTTATTTGTGAAGTATT 404 consensus_6029#2 AAAGTA------------------------------------------------------ 357 consensus_6029#1 TTGATTGCCGTGAAAGAGATTGAT--CAGCAGATGATAATGAAGTTATTTGTGAAGTATT 346 consensus_6029#3 GTGCTTGACAT-ACTGAGATTTATACCAGCTGGTGAGAAATGAGTGGGT----------- 276 * consensus_6029#0 TTGTGACTGGGGTTGTTGGAATATGAGAACCGGTTGTTGTCCAGATCCTG 454 consensus_6029#2 -------------------------------------------------- consensus_6029#1 TTGTGACTGGGGTTGTTGGAATATGA------------------------ 372 consensus_6029#3 -------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||