These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6112#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 538 fasta sequence [GTTAATGTATGGCATAAGACCGCCAATCAGAGAGCAGCGAATCATCGATTGGAACAGTGACACACGAAAACCGTACGAGCAGTCTAGAGCGCTTATCGATCCTGCTTCTGCCTAGCCTAGCCAGTTAAGTCCAAAACACCAATAACAGCCTCTGTGATATGAATCCTTGTATTTCAAACATACTGAGTTTATATACCAAACAGACTGACCACAACGTACCGATAAAATAGAGAATAACATTTGTACAAGAGTTAGCCAAATGTGGCTGTGAATAAGGGGAGCAGTAATTTATAGACTGGGTATAACTCAGG-AATGGTAAATCGTACAATAATAGTCCAAGGGTCAAAATAAAGCTGACAATGAAAGGAACATGAATATGAGTAGTTTAATTATTTAGCANATATANCGATAGAATTTATATGCATATATTGGGTCCATAATGGATCCNNTAGNTACCCATCACTATTGNTATCGGNNNGCATACAATGTATTACAAATTGAACTGATGAACTGGGTATGTGGTTTTTTAAACGCCTTG] [-] EMBL CD200745 [GTTAATGTATGGCATAAGACCGCCAATCAGAGAGCAGCGAATCATCGATTGGAACAGTGACACACGAAAACCGTACGAGCAGTCTAGAGTGCTTATCGATCCTGCTT ] [+] EMBL CD179959 [ GAACAGTGACACACGAAAACCGTACGAGCAGTCTAGAGCGCTTATCGATCCTGCTTCTGCCTAGCCTAGCCAGTTAAGTCCAAAACACCAATAACAGCCTCTGTGATATGAATCCTTGTATTTCAAACATACTGAGTTTATATACCAAACAGACTGACCACAACGTACCGATAAAATAGAGAATAACATTTGTACAAGAGTTAGCCAAATGTGGCTGTGAATAAGGGGAGCAGTAATTTATAGACTGGGTATAACTCAGG AATGGTAAATCGTACAATAATAGTCCAAGGGTCAAAATAAAGCTGACAATGAAAGGAACATGAATATGAGTAGTTTAATTATTTAGCANATATANCGATAGAATTTATATGCATATATTGGGTCCATAATGGATCCNNTAGNTACCCATCACTATTGNTATCGGNNNGCATACAATGTATTACAAATTGAACTGATGAACTGGGTATGTGGTTTTTTAAACGCCTTG] [+] EMBL CD179903 [ GAACAGTGACACACGAAAACCGTACGAGCAGTCTAGAGCGCTTATCGATCCTGCTTCTGCCTAGCCTAGCCAGTTAAGTCCAAAACACCAATAACAGCCTCTGTGATATGAATCCTTGTATTTCAAACATACTGAGTTTATATACCAAACAGACTGACCACAACGTACCGATAAAATAGAGAATAACATTTGTACAAGAGTTAGCCAAATGTGGCTGTGAATAAGGGGAGCAGTAATTTATAGACTGGGTATAACTCAGGAAATGGT AATCGTACAATAATAGTCCAAGGGTCAAA ] consensusID : consensus_6112#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 274 fasta sequence [ATAGAGTTAGTCATTTTTCACTCTCTAAGTGTTATCTTGATATTTTGATTTAGATTTTATCAGTTTAATTGTCCTCTGTTTCATATTGACAATTTATTTCATTCTGATATGTTTATGTTATATCTTGGGGCCGACTGGATTCCCAGTTAATGTGTGACGTGATCAGACCTCCAATTAGAGAGCAGTGAATTATCGATTGGAATAATGACACACGAAAACCTTACGAGCAGTCTAGAGCGCTTATCGATCCTGCTTCTGCCTACTCACTATTATT] [+] EMBL CD120135 [ATAGAGTTAGTCATTTTTCACTCTCTAAGTGTTATCTTGATATTTTGATTTAGATTTTATCAGTTTAATTGTCCTCTGTTTCATATTGACAATTTATTTCATTCTGATATGTTTATGTTATATCTTGGGGCCGACTGGATTCCCAGTTAATGTGTGACGTGATCAGACCTCCAATTAGAGAGCAGTGAATTATCGATTGGAATAATGACACACGAAAACCTTACGAGCAGTCTAGAGCGCTTATCGATCCTGCTTCTGCCTACTCACTATTATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6112#0 GTTAATGTATGGCATAAGACCGCCAATCAGAGAGCAGCGAATCATCGATTGGAACAGTGA 60 consensus_6112#1 ------------------------------------------------------------ consensus_6112#0 CACACGAAAACCGTACGAGCAGTCTAGAGCGCTTATCGATCCTGCTTCTGCCTAGCCTAG 120 consensus_6112#1 ------------------------------------------------------------ consensus_6112#0 CCAGTTAAGTCCAAAACACCAATAACAGCCTCTGTGATATGAATCCTTGTATTTCAAACA 180 consensus_6112#1 -----------------------------------------------------ATAGAGT 7 * * consensus_6112#0 TACTGAGTTTATATACCAAACAGACTGACCACAACGTACCGATAAAATAGAGAATAACAT 240 consensus_6112#1 TAGTCATTTTTCACTCTCTA-AGTGTTATCTTGATATTTTGATTTAG------ATTTTAT 60 ** * * *** * * * ** * * * * * *** * ** ** consensus_6112#0 TTGTACAAGAGTTAGCCAAATGTGGCTGTGAATAAGGGGAGCAGTAATTTATAGACTGGG 300 consensus_6112#1 CAGTTTAATTGTCCTCTGTTTCATATTGACAATTTATTTCATTCTGATATGTTTAT--GT 118 ** ** ** * * ** *** * ** * * * * consensus_6112#0 TATAACTCAGGAATGGTAAATCGTACAATAATAGTCCAAGGGTCAAAATAAAGCTGACAA 360 consensus_6112#1 TATATCTTGGGGCCGACTGGATTCCCAGTTAATGTGTGA----CGTGATCAGACCTCCAA 174 **** ** ** * ** * * ** * * ** * * *** consensus_6112#0 TGAAAGGAACATGAATATGAGTAGTTTAATTATTTAGCANATATANCGATAGAATTTATA 420 consensus_6112#1 TTAGAGAGCAGTGAA-----------TTATCGATTGGAATAATGACACACGAAAACCTTA 223 * * ** **** * ** ** * * * * * ** ** consensus_6112#0 TGCATATATTGGGTCCATAATGGATCCNNTAGNTACCCA-TCACTATTGNTATCGGNNNG 479 consensus_6112#1 CGAGCAGTCTAGAGCGCTTATCGATCCTGCTTCTGCCTACTCACTATTATT--------- 274 * * * * * * ** ***** * ** * ******** * consensus_6112#0 CATACAATGTATTACAAATTGAACTGATGAACTGGGTATGTGGTTTTTTAAACGCCTTG 538 consensus_6112#1 ----------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||