cluster # 6170

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Schistosoma mansoni
cluster # 6170 cluster # 6170 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6170#0 length = 267 sequences # 2

consensus_6170#1 length = 219 sequences # 1
consensus_6170#2 length = 174 sequences # 1

consensusID : consensus_6170#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 267
fasta sequence

                              [ACTGCCTCGGCCTTCAAGGTTCTCACTTGAATATTTGCTACTACCACCAAGATCTGCGCCTGTGGTTGCTTCACCTAGGCTCACGCCTGAGGCTTCCCGCTAGCCACAGCGACCCTCCTACTCGTTGCCGTCACTCCTCGCCTAAACCAAGTCCCTGCGCGCGGGAANGCNNNNNNNTCTTACCTACAGCCGACCGGTCCGATAGCCGTCCCCCCTTACGCCTTATTTGGGTTNNNNANGGCCTGGTTGATTCGGCCGGGTGAGTTG]

[+] EMBL CD169145             [ACTGCCTCGGCCTTCAAGGTTCTCACTTGAATATTTGCTACTACCACCAAGATCTGCGCCTGTGGTTGCTTCACCTAGGCTCACGCCTGAGGCTTCCCGCT                                                                                                                                                                      ]
[+] EMBL CD160823             [                  GTTCTCACTTGAATATTTGCTACTACCACCAAGATCTGCGCCTGTGGTTGCTTCACCTAGGCTCACGCCTGAGGCTTCCCGCTAGCCACAGCGACCCTCCTACTCGTTGCCGTCACTCCTCGCCTAAACCAAGTCCCTGCGCGCGGGAANGCNNNNNNNTCTTACCTACAGCCGACCGGTCCGATAGCCGTCCCCCCTTACGCCTTATTTGGGTTNNNNANGGCCTGGTTGATTCGGCCGGGTGAGTTG]




>consensus_6170#0
ACTGCCTCGGCCTTCAAGGTTCTCACTTGAATATTTGCTACTACCACCAAGATCTGCGCC
TGTGGTTGCTTCACCTAGGCTCACGCCTGAGGCTTCCCGCTAGCCACAGCGACCCTCCTA
CTCGTTGCCGTCACTCCTCGCCTAAACCAAGTCCCTGCGCGCGGGAANGCNNNNNNNTCT
TACCTACAGCCGACCGGTCCGATAGCCGTCCCCCCTTACGCCTTATTTGGGTTNNNNANG
GCCTGGTTGATTCGGCCGGGTGAGTTG

consensusID : consensus_6170#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 219
fasta sequence

                              [TTCAAGGTTCTCACTTGAATATTTGCTACTACCACCAAGATCTGCGCCTGTGGTTGCTTCACCTAGGCTCACGCCTGAGGCTTCCCGCTAGCCACAGCGACCCTCCTACTCGTTGCCGTCACTCCATGGAACCCTTCTCCACCTCGGCCTTCAAGGTTCTCACTTGAATATTTGCTACTACCACCAAGATCTGCGCCTGTGGTTGTTTCACCTAGGCTC]

[+] EMBL BG932873             [TTCAAGGTTCTCACTTGAATATTTGCTACTACCACCAAGATCTGCGCCTGTGGTTGCTTCACCTAGGCTCACGCCTGAGGCTTCCCGCTAGCCACAGCGACCCTCCTACTCGTTGCCGTCACTCCATGGAACCCTTCTCCACCTCGGCCTTCAAGGTTCTCACTTGAATATTTGCTACTACCACCAAGATCTGCGCCTGTGGTTGTTTCACCTAGGCTC]




>consensus_6170#1
TTCAAGGTTCTCACTTGAATATTTGCTACTACCACCAAGATCTGCGCCTGTGGTTGCTTC
ACCTAGGCTCACGCCTGAGGCTTCCCGCTAGCCACAGCGACCCTCCTACTCGTTGCCGTC
ACTCCATGGAACCCTTCTCCACCTCGGCCTTCAAGGTTCTCACTTGAATATTTGCTACTA
CCACCAAGATCTGCGCCTGTGGTTGTTTCACCTAGGCTC

consensusID : consensus_6170#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 174
fasta sequence

                              [ACCACCTCGGCCTTCAAGGTTCTCACTTGAATATTTGCTACTACCACCAAGATCTGCGCCTGTGGTTGCTTCACCTAGGCTCACGCCTGAGGCTTCCCGCTAGCCACAGCGACCCTCCTACTCGTTGCCGTCACTACACCGACCTCACACAGCATAGGCCTAGCTTACAGCAAC]

[+] EMBL CD072474             [ACCACCTCGGCCTTCAAGGTTCTCACTTGAATATTTGCTACTACCACCAAGATCTGCGCCTGTGGTTGCTTCACCTAGGCTCACGCCTGAGGCTTCCCGCTAGCCACAGCGACCCTCCTACTCGTTGCCGTCACTACACCGACCTCACACAGCATAGGCCTAGCTTACAGCAAC]




>consensus_6170#2
ACCACCTCGGCCTTCAAGGTTCTCACTTGAATATTTGCTACTACCACCAAGATCTGCGCC
TGTGGTTGCTTCACCTAGGCTCACGCCTGAGGCTTCCCGCTAGCCACAGCGACCCTCCTA
CTCGTTGCCGTCACTACACCGACCTCACACAGCATAGGCCTAGCTTACAGCAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6170#0      ACTGCCTCGGCCTTCAAGGTTCTCACTTGAATATTTGCTACTACCACCAAGATCTGCGCC 60
consensus_6170#2      ACCACCTCGGCCTTCAAGGTTCTCACTTGAATATTTGCTACTACCACCAAGATCTGCGCC 60
consensus_6170#1      ------------TTCAAGGTTCTCACTTGAATATTTGCTACTACCACCAAGATCTGCGCC 48
                                  ************************************************

consensus_6170#0      TGTGGTTGCTTCACCTAGGCTCACGCCTGAGGCTTCCCGCTAGCCACAGCGACCCTCCTA 120
consensus_6170#2      TGTGGTTGCTTCACCTAGGCTCACGCCTGAGGCTTCCCGCTAGCCACAGCGACCCTCCTA 120
consensus_6170#1      TGTGGTTGCTTCACCTAGGCTCACGCCTGAGGCTTCCCGCTAGCCACAGCGACCCTCCTA 108
                      ************************************************************

consensus_6170#0      CTCGTTGCCGTCACTCCTCGCCTAAACCAAGTCCCTGCGCGCGGGAANGCNNNNNNNTCT 180
consensus_6170#2      CTCGTTGCCGTCA--------CTACACCGA--CCTCACACAGCATAGGCCTAGCTTACAG 170
consensus_6170#1      CTCGTTGCCGTCA--------CTCCATGGAACCCTTCTCCACCTCGGCCTTCAAGGTTCT 160
                      *************        **  *   *  **     *                    

consensus_6170#0      TACCTACAGCCGACCGGTCCGATAGCCGTCCCCCCTTACGCCTTATTTGGGTTNNNNANG 240
consensus_6170#2      CAAC-------------------------------------------------------- 174
consensus_6170#1      CACTTG-----AATATTTGCTACTACCACCAAGATCTGCGCCTGTGGTTGTTTCACCTAG 215
                       *                                                          

consensus_6170#0      GCCTGGTTGATTCGGCCGGGTGAGTTG 267
consensus_6170#2      ---------------------------
consensus_6170#1      GCTC----------------------- 219