These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6253#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 483 fasta sequence [CAACAATGATGCGCGTATATCCAACCNCCTTCTTCACCTTCACGCGGAGTACACTTAACAATCAGATTGGAAACTTTTAAGGTATCTTCATCAGGTTTAGAAGGCCAACCAACATAATTCAATTCTTCCACTAAACCAAATGGTCGGCCATTACAATCGAAATAAGCATTTGGCATCCCTGCAAGATACATTTTGCAATCATAACCAAAACAGTTTTTACTTCGACTACGTCGACATCCGTCTAGAGACGTGTGTGGGCCTACCTTGCAAAACTCAGGGTCTGCCGTCAGAGGTGTGAAAGATGCCACAACAATCTTGCTATGCTGGTTCCGTCGATTGGTGTGTGTTGAACGGTTTGTCACCAAAATATTTGTACACTTTTCCTGCTTGAGCTTTACCTTGATGATAAGGTCACTGTACCAAGTAGGGGGTTCTGAGTATTCAATCTTTGTGTAGAACCTAAGTAGTTCCCCCTGTCCAAGT] [-] EMBL CD181314 [CAACAATGATGCGCGTATATCCAACCNCCTTCTTCACCTTCACGCGGAGTACACTTAACAATCAGATTGGAAACTTTTAAGGTATCTTCATCAGGTTTAGAAGGCCAACCAACATAATTCAATTCTTCCACTAAACCAAATGGTCGGCCATTACAATCGAAATAAGCATTTGGCATCCCTGCAAGATACATTTTGCAATCATAACCAAAACAGTTTTTACTTCGACTACGTCGACATCCGTCTAGAGACGTGTGTGGGCCTACC ] [+] EMBL CD064065 [ gacgACATTCACGCGGAGTACACTTAACAATCAGA GGAAACTTTTAAGGTATCTTCATCAGGTTTAGAAGGCCAACCAACATAATTCAATTCTTCCACTAAACCAAATGGTCGGCCATTACAATCGAAATAAGCATTTGGCATCCCTGCAAGATACATTTTGCAATCATAACCAAAACAGTTTTTACTTCGACTACGTCGACATCCGTCTAGAGACGTGTGTGGGCCTACCTTGCAAAACTCAGGGTCTGCCGTCAGAGGTGTGAAAGATGCCACAACAATCTTGCTATGCTGGTTCCGTCGAT ] [+] EMBL CD190754 [ GCGGAGTACACTTAACAATCAGATTGGAAACTTTTAAGGTATCTTCATCAGGTTTAAAAGGCCAACCAACATAATTCAATTCTTCCACTAAACCAAATGGTCGGCCATTACAATCGAAATAAGCATTTGGCATCCCTGCAAGATACATTTTGCAATCATAACCAAAACAGTTTTTACTTCGACTACGTCGACATCCGTCTAGAGACGTGTGTGGGCCTACCTTGCAAAACTCAGGGTCTGCCGTCAGAGGTGTGAAAGATGCCACAACAATCTTGCTATGCTGGTTCCGTCGATTGGTGTGTGTTGAACGGTTTGTCACCAAAATATTTGTACACTTTTCCTGCTTGAGCTTTACCTTGATGATAAGGTCACTGTACCAAGTAGGGGGTTCTGAGTATTCAATCTTTGTGTAGAACCTAAGTAGTTCCCCCTGTCCAAGT] consensusID : consensus_6253#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 364 fasta sequence [GTCGGCCATTACAATCGAAATAAGCATTTGGCATCCCTGCAAGATACATTTTGCAATCATAACTAAGTATAGAGTTATAATGCAAATCCAACTCACCCAAAACAGTTTTTACTTCGACTACGTCGACATCCGTCTAGAGACGTGTGTGGGCCTACCTTGCAAAACTCAGGGTCTGCCGTCAGAGGTGTGAAAGATGCCACAACAATCTTGCTATGCTGGTTCCGTCGATTGGTGTGTGTTGAACGGTTTGTCACCAAAATATTTGTACACTTTTCCTGCTTGAGCTTTACCTTGATGATAAGGTCACTGTACCAAGTAGGGGGTTCTGAGTATTCAATCTTTGTGTAGAACCTAAGTAGTTCCC] [-] EMBL CD155314 [GTCGGCCATTACAATCGAAATAAGCATTTGGCATCCCTGCAAGATACATTTTGCAATCATAACTAAGTATAGAGTTATAATGCAAATCCAACTCACCCAAAACAGTTTTTACTTCGACTACGTCGACATCCGTCTAGAGACGTGTGTGGGCCTACCTTGCAAAACTCAGGGTCTGCCGTCAGAGGTGTGAAAGATGCCACAACAATCTTGCTATGCTGGTTCCGTCGATTGGTGTGTGTTGAACGGTTTGTCACCAAAATATTTGTACACTTTTCCTGCTTGAGCTTTACCTTGATGATAAGGTCACTGTACCAAGTAGGGGGTTCTGAGTATTCAATCTTTGTGTAGAACCTAAGTAGTTCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6253#0 CAACAATGATGCGCGTATATCCAACCNCCTTCTTCACCTTCACGCGGAGTACACTTAACA 60 consensus_6253#1 ------------------------------------------------------------ consensus_6253#0 ATCAGATTGGAAACTTTTAAGGTATCTTCATCAGGTTTAGAAGGCCAACCAACATAATTC 120 consensus_6253#1 ------------------------------------------------------------ consensus_6253#0 AATTCTTCCACTAAACCAAATGGTCGGCCATTACAATCGAAATAAGCATTTGGCATCCCT 180 consensus_6253#1 ----------------------GTCGGCCATTACAATCGAAATAAGCATTTGGCATCCCT 38 ************************************** consensus_6253#0 GCAAGATACATTTTGCAATCATAAC----------------------------------C 206 consensus_6253#1 GCAAGATACATTTTGCAATCATAACTAAGTATAGAGTTATAATGCAAATCCAACTCACCC 98 ************************* * consensus_6253#0 AAAACAGTTTTTACTTCGACTACGTCGACATCCGTCTAGAGACGTGTGTGGGCCTACCTT 266 consensus_6253#1 AAAACAGTTTTTACTTCGACTACGTCGACATCCGTCTAGAGACGTGTGTGGGCCTACCTT 158 ************************************************************ consensus_6253#0 GCAAAACTCAGGGTCTGCCGTCAGAGGTGTGAAAGATGCCACAACAATCTTGCTATGCTG 326 consensus_6253#1 GCAAAACTCAGGGTCTGCCGTCAGAGGTGTGAAAGATGCCACAACAATCTTGCTATGCTG 218 ************************************************************ consensus_6253#0 GTTCCGTCGATTGGTGTGTGTTGAACGGTTTGTCACCAAAATATTTGTACACTTTTCCTG 386 consensus_6253#1 GTTCCGTCGATTGGTGTGTGTTGAACGGTTTGTCACCAAAATATTTGTACACTTTTCCTG 278 ************************************************************ consensus_6253#0 CTTGAGCTTTACCTTGATGATAAGGTCACTGTACCAAGTAGGGGGTTCTGAGTATTCAAT 446 consensus_6253#1 CTTGAGCTTTACCTTGATGATAAGGTCACTGTACCAAGTAGGGGGTTCTGAGTATTCAAT 338 ************************************************************ consensus_6253#0 CTTTGTGTAGAACCTAAGTAGTTCCCCCTGTCCAAGT 483 consensus_6253#1 CTTTGTGTAGAACCTAAGTAGTTCCC----------- 364 ************************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||