These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6280#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1098 fasta sequence [AATACAAACTCCTGTTGTCGTCGTTGCCTATAATCAGTCCTGGGAAGAAATGACTGATGCTCTTTTGAGTTTTCTAATAAACAGTCATTGAAAAATTCGTCAGATTGATCCAGTCGAAAGAGTATAGTTTGAAGATTCATAATAGCATCAGATATATGTATTTGTAATGGTCGAATAACCTGGGGGAAAATTTTGGAGTCTTTTAAACGTTCAGCAACACGAACAATCTGATCAATGAATGATAGCCAGTATTTATCAAAAGCAGTCCATAACAAAAAACATGTGGACAAACGACTAAAACAACTATGTCGACAAATGAGAGGTTGGATTACTCCTGAACATAAATTACAGTAACGTAGTTTAATCCATTCATTTATACAACTATCATTCACTGCTATCTTTGATAAAACCTGAACCACACGATCTCCTAAAAGAAGACCATTCCTAAGAATCCTGGAAGGAGGAAATGCGCGAGTTGCCATAACTCTTATTATTTCGGGCGCTTGATCAAATGGCTTCATAGGTCTTAGCTTGGAAGCAACGCAGTCGGCTACAATACTATCCGGTTCAGTTTTTACAAACAGCATTACACGGAGTGCACGAATTAACAGGCCAT-CGAAAAAGTCATCAACCAACGACGCTATATTTTGCCGGTTTCCCAGCATGTAACTTTCCAGTTCACGGAAGAATGCCTCAACGAAATCCTTGTTTTGATCATAGTTATATCCGTAGGAGTTTACAAAGAGATCATGGAAACTTTGCAATGTTAGTTTTAAACTCCCTAACATGTAGTCTTGCAGATAATGAGCATCTTCTCTTAAATTCTGACTTATGTTAAGCCAGAATATGCGCCAGTGCTCAGTGAATTCGAATGCGCCAATAGACACAATGTTTTTCAGCGAACCTTCATTACAGCAGTCAATAGACTCAGATCCGCCGTTTTCTCCGCACAAATTAACCACCTGATCTAAAGATAACAAAATGCGGCTNTAACATAAGCGTTACTAGGTTCAAGAGGGAGGGAAATATATCTATTTATGATTTCTCTAGCCAACATGCAATGTGAGTCAACACTCTTGAACTCTGCAAGCCACAGGC] [-] EMBL CD192318 [AATACAAACTCCTGTTGTCGTCGTTGCCTATAATCAGTCCTGGGAAGAAATGACTGATGCTCTTTTGAGTTTTCTAATAAACAGTCATTGAAAAATTCGTCAGATTGATCCAGTCGAAAGAGTATAGTTTGAAGATTCATAATAGCATCAGATATATGTATTTGTAATGGTCGAATA ] [-] EMBL CD185694 [ TGATCCAGTCGAAAGAGTATAGTTTGAAGATTCATAATAGCATCAGATATATGTATTTGTAATGGTCGAATAACCTGGGGGAAAATTTTGGAGTCTTTTAAACGTTCAGCAACACGAACAATCTGATCAATGAATGATAGCCAGTATTTATCAAAAGCAGTCCATAACAAAAAACATGTGGACAAACGACTAAAACAACTATGTCGACAAATGAGAGGTTGGATTACTCCTGAACATAAATTACAGTAACGTAGTTTAATCCATTCATTTATACAACTATCATTCACTGCTATCTTTGATAAAACCTGAACCACACGATCTCCTAAAAGAAGACCATTCCTAAGAATCCTGGAAGGAGGAAATGCGCGAGTTGCCATAACTCTTATTATTTCGGGCGCTTGATCAAATGGCTTCATAGGTCTTAGCTTGGAAGCAACGCAGTCGGCTACAATACTATCCGGTTCAGTTTTTACAAACAGCATTACACGGAGTGCACGAATTAACAGGCCAT CGAAAAAGTCATCAACCAACGACGCTATATTT ] [+] EMBL CD136718 [ TTGGAAGCAACGCAGTCGGCTACAATACTATCCGATTCAGTTTTTACAAACAGCATTACACGGAGTGCACGAATTAACAGGCCATNCGAAAAAGTCATCAACCAACGACGCTATATTTTGCCGGTTTCCCAGCATGTAACTTTCCAGTTCACGGAAGAATGCCTCAACGAAATCCTTGTTTTGATCATAGTTATATCCGTAGGAGTTTACAAAGAGATCATGGAAACTTTGCAATGTTAGTTTTAAACTCCCTAACATGTAGTCTTGCAGATAATGAGCATCTTCTCTTAAATTCTGACTTATGTTAAGCCAGAATATGCGCCAGTGCTCAGTGAATTCGAATGCGCCAATAGACACAATGTTTTTCAGCGAACCTTCATTACAGCAGTCAATAGACTCAGATCCGCCGTTTTCTCCGCACAAATTAACCACCTGATCTAAAGATAACAAAATGCGGCTNTAACATAAGCGTTACTAGGTTCAAGAGGGAGGGAAATATATCTATTTATGATTTCTCTAGCCAACATGCAATGTGAGTCAACACTCTTGAACTCTGCAAGCCACAGGC] consensusID : consensus_6280#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 168 fasta sequence [ATGCGCCAATAGACACAATGTTTTTCAGCGAACCTTCATTACAGCAGACAATAGACTCAGATCCGCCGTTTTCTCCGCACAAATTAACCACCTGATTAGGTTCAAGGGGGCGGGAAATATATCTATTTATGATTTCTCTAGCCAACATGCAATGTGAGTCAACACTCT] [-] EMBL CD121122 [ATGCGCCAATAGACACAATGTTTTTCAGCGAACCTTCATTACAGCAGACAATAGACTCAGATCCGCCGTTTTCTCCGCACAAATTAACCACCTGATTAGGTTCAAGGGGGCGGGAAATATATCTATTTATGATTTCTCTAGCCAACATGCAATGTGAGTCAACACTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6280#0 AATACAAACTCCTGTTGTCGTCGTTGCCTATAATCAGTCCTGGGAAGAAATGACTGATGC 60 consensus_6280#1 ------------------------------------------------------------ consensus_6280#0 TCTTTTGAGTTTTCTAATAAACAGTCATTGAAAAATTCGTCAGATTGATCCAGTCGAAAG 120 consensus_6280#1 ------------------------------------------------------------ consensus_6280#0 AGTATAGTTTGAAGATTCATAATAGCATCAGATATATGTATTTGTAATGGTCGAATAACC 180 consensus_6280#1 ------------------------------------------------------------ consensus_6280#0 TGGGGGAAAATTTTGGAGTCTTTTAAACGTTCAGCAACACGAACAATCTGATCAATGAAT 240 consensus_6280#1 ------------------------------------------------------------ consensus_6280#0 GATAGCCAGTATTTATCAAAAGCAGTCCATAACAAAAAACATGTGGACAAACGACTAAAA 300 consensus_6280#1 ------------------------------------------------------------ consensus_6280#0 CAACTATGTCGACAAATGAGAGGTTGGATTACTCCTGAACATAAATTACAGTAACGTAGT 360 consensus_6280#1 ------------------------------------------------------------ consensus_6280#0 TTAATCCATTCATTTATACAACTATCATTCACTGCTATCTTTGATAAAACCTGAACCACA 420 consensus_6280#1 ------------------------------------------------------------ consensus_6280#0 CGATCTCCTAAAAGAAGACCATTCCTAAGAATCCTGGAAGGAGGAAATGCGCGAGTTGCC 480 consensus_6280#1 ------------------------------------------------------------ consensus_6280#0 ATAACTCTTATTATTTCGGGCGCTTGATCAAATGGCTTCATAGGTCTTAGCTTGGAAGCA 540 consensus_6280#1 ------------------------------------------------------------ consensus_6280#0 ACGCAGTCGGCTACAATACTATCCGGTTCAGTTTTTACAAACAGCATTACACGGAGTGCA 600 consensus_6280#1 ------------------------------------------------------------ consensus_6280#0 CGAATTAACAGGCCATCGAAAAAGTCATCAACCAACGACGCTATATTTTGCCGGTTTCCC 660 consensus_6280#1 ------------------------------------------------------------ consensus_6280#0 AGCATGTAACTTTCCAGTTCACGGAAGAATGCCTCAACGAAATCCTTGTTTTGATCATAG 720 consensus_6280#1 ------------------------------------------------------------ consensus_6280#0 TTATATCCGTAGGAGTTTACAAAGAGATCATGGAAACTTTGCAATGTTAGTTTTAAACTC 780 consensus_6280#1 ------------------------------------------------------------ consensus_6280#0 CCTAACATGTAGTCTTGCAGATAATGAGCATCTTCTCTTAAATTCTGACTTATGTTAAGC 840 consensus_6280#1 ------------------------------------------------------------ consensus_6280#0 CAGAATATGCGCCAGTGCTCAGTGAATTCGAATGCGCCAATAGACACAATGTTTTTCAGC 900 consensus_6280#1 -------------------------------ATGCGCCAATAGACACAATGTTTTTCAGC 29 ***************************** consensus_6280#0 GAACCTTCATTACAGCAGTCAATAGACTCAGATCCGCCGTTTTCTCCGCACAAATTAACC 960 consensus_6280#1 GAACCTTCATTACAGCAGACAATAGACTCAGATCCGCCGTTTTCTCCGCACAAATTAACC 89 ****************** ***************************************** consensus_6280#0 ACCTGATCTAAAGATAACAAAATGCGGCTNTAACATAAGCGTTACTAGGTTCAAGAGGGA 1020 consensus_6280#1 ACCTGAT--------------------------------------TAGGTTCAAGGGGGC 111 ******* ********** *** consensus_6280#0 GGGAAATATATCTATTTATGATTTCTCTAGCCAACATGCAATGTGAGTCAACACTCTTGA 1080 consensus_6280#1 GGGAAATATATCTATTTATGATTTCTCTAGCCAACATGCAATGTGAGTCAACACTCT--- 168 ********************************************************* consensus_6280#0 ACTCTGCAAGCCACAGGC 1098 consensus_6280#1 ------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||