These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_640#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence [AACATATATTTACATATGTAGAATGAAAAGAGAAAATAAAAGGTGGTTTTAAAAAACAATTCGATCGAAGTGTTTGGCTCATGTAATTACTAGATCTTTACAGAGAGGTTCATTCTTCAACTTGCCTCAGACTTTTCTTGCCTTCGCCATATAATTACTGAGCCCTTCTCATCTGCCGACGCTAACATATTCTCGTCCCAACTGATAGCTACATCTAGCACTGGAGCCGTATGTCCCTGTAAAATGGTGACAACACCCGTAGATGTTTGTTTATTGGGAGAAGAACTGTTTCTTGTCTCGGCGTCTGCATTACGACTTCTCAACACATTATATAGGTATACATTGCAATCTTCACTTCCACTAGCAGCACAAGCTCCAGAACGGAATGATATGAGTGGTGCAAAACACGAATGAATAAGACGAAGTGTTGTTGGGACGGAATTGAAAGGACGATGGTGCACAGGAAACCTTTGCTCCAGAATTACGCTCCTATTATGTAATGTTAGTCGAAGCAACAATAGCCCGATACCAGCTGCATTGATCAACAAATATGTCTCACTTTTTTCTTTGGATAGCCATGAATATATAGAAAGACTAGTTATGCTTGGCGTTAACGATGTACCTTCACTACTACGTAACTTAACTATCCCACTATTCGTACGTG] [+] EMBL CD074877 [AACATATATTTACATATGTAGAATGAAAAGAGAAAATAAAAGGTGGTTTTAAAAAACAATTCGATCGAAGTGTTTGGCTCATGTAATTACTAGATCTTTACAGAGAGGTTCATTCTTCAACTTGCCTCAGACTTTTCTTGCCTTCGCCATATAATTACTGAGCCCTTCTCATCTGCCGACGCTAACATATTCTCGTCCCAACTGATAGCTACATCTAGCACTGGAGCCGTATGTCCCTGTAAAATGGTGACAACACCCGTAGATGTTTGTTTATTGGGAGAAGAACTGTTTCTTGTCTCGGCGTCTGCATTACGACTTCTCAACACATTATATAGGTATACATTGCAATCTTCACTTCCACTAGCAGCACAAGCTCCAGAACGGAATGATATGAGTGGTGCAAAACACGAATGAATAAGACGAAGTGTTGTTGGGACGGAATTGAAAGGACGATGGTGCACAGGAAACCTTTGCTCCAGAATTACGCTCCTATTATGTAATGTTAGTCGAAGCAACAATAGCCCGATACCAGCTGCATTGATCAACAAATATGTCTCACTTTTTTCTTTGGATAGCCATGAATATATAGAAAGACTAGTTATGCTTGGCGTTAACGATGTACCTTCACTACTACGTAACTTAACTATCCCACTATTCGTACGTG] consensusID : consensus_640#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 232 fasta sequence [TCAGGCCAAGAGCGTCTGCATTACGACTTCTCAACACATTATATAGGTATACATTGCAATCTTCACTTCCACTAGCAGCACAAGCTCCAGAACGGAATGATATGAGTGGTGCAAAACACGAATGAATAAGACGAAGTGTTGTTGGGACGGAATTGAAAGGACGATGGTGCACAGGAAACCTTTGCTCCAGAATTACGCTCCTATTATGTAATGTTAGTCGAAGCAACAATAG] [-] EMBL CD193660 [TCAGGCCAAGAGCGTCTGCATTACGACTTCTCAACACATTATATAGGTATACATTGCAATCTTCACTTCCACTAGCAGCACAAGCTCCAGAACGGAATGATATGAGTGGTGCAAAACACGAATGAATAAGACGAAGTGTTGTTGGGACGGAATTGAAAGGACGATGGTGCACAGGAAACCTTTGCTCCAGAATTACGCTCCTATTATGTAATGTTAGTCGAAGCAACAATAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_640#0 AACATATATTTACATATGTAGAATGAAAAGAGAAAATAAAAGGTGGTTTTAAAAAACAAT 60 consensus_640#1 ------------------------------------------------------------ consensus_640#0 TCGATCGAAGTGTTTGGCTCATGTAATTACTAGATCTTTACAGAGAGGTTCATTCTTCAA 120 consensus_640#1 ------------------------------------------------------------ consensus_640#0 CTTGCCTCAGACTTTTCTTGCCTTCGCCATATAATTACTGAGCCCTTCTCATCTGCCGAC 180 consensus_640#1 ------------------------------------------------------------ consensus_640#0 GCTAACATATTCTCGTCCCAACTGATAGCTACATCTAGCACTGGAGCCGTATGTCCCTGT 240 consensus_640#1 ------------------------------------------------------------ consensus_640#0 AAAATGGTGACAACACCCGTAGATGTTTGTTTATTGGGAGAAGAACTGTTTCTTGTCTCG 300 consensus_640#1 --------------------------------------------------TCAGGCCAAG 10 ** * * * consensus_640#0 -GCGTCTGCATTACGACTTCTCAACACATTATATAGGTATACATTGCAATCTTCACTTCC 359 consensus_640#1 AGCGTCTGCATTACGACTTCTCAACACATTATATAGGTATACATTGCAATCTTCACTTCC 70 *********************************************************** consensus_640#0 ACTAGCAGCACAAGCTCCAGAACGGAATGATATGAGTGGTGCAAAACACGAATGAATAAG 419 consensus_640#1 ACTAGCAGCACAAGCTCCAGAACGGAATGATATGAGTGGTGCAAAACACGAATGAATAAG 130 ************************************************************ consensus_640#0 ACGAAGTGTTGTTGGGACGGAATTGAAAGGACGATGGTGCACAGGAAACCTTTGCTCCAG 479 consensus_640#1 ACGAAGTGTTGTTGGGACGGAATTGAAAGGACGATGGTGCACAGGAAACCTTTGCTCCAG 190 ************************************************************ consensus_640#0 AATTACGCTCCTATTATGTAATGTTAGTCGAAGCAACAATAGCCCGATACCAGCTGCATT 539 consensus_640#1 AATTACGCTCCTATTATGTAATGTTAGTCGAAGCAACAATAG------------------ 232 ****************************************** consensus_640#0 GATCAACAAATATGTCTCACTTTTTTCTTTGGATAGCCATGAATATATAGAAAGACTAGT 599 consensus_640#1 ------------------------------------------------------------ consensus_640#0 TATGCTTGGCGTTAACGATGTACCTTCACTACTACGTAACTTAACTATCCCACTATTCGT 659 consensus_640#1 ------------------------------------------------------------ consensus_640#0 ACGTG 664 consensus_640#1 ----- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||