These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6601#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 703 fasta sequence [AATTGCGAAATAATACAAAACTCTTTGAACATAAATATTCATCAGAATATGGACAACATCATCAATTTCAAATTACATCATTGTCGAATAGAAAACAACGTCTATTACGTAATCATCACCAACATCCTCCTCGTGCTCCTCATCCGCCGCCGCCTCCTCCTCCTCATCCTCTGCATAATCCAATTCAATTAAATGATAAACCTATGATGACTAGTAATTTAATTTCATCAAAATATGAATCAAAAAGTCAAAATTATTTAGATTTAAATCAATCACCTAAAATGCGTTTTATACGTAAATTAAATACATTTGCTAGTGTACCTGATTTAACTAAAAAACCAATACGTAGTGCATTAAAAGGTAGTAGAAATAGCAGTGTTCATCGATCAATAAATGATCATGAACAAGTTGTCCGATCACTAAATCCTTTAAATTCTGATTCATTTTCATTAACACCACTAATACTAGAAGATGAAATGAGACACTTAGTACATTTACATTCATCAGATCTATCCAATACAATCATGAATATTAAACCAATAAGTAAAACAGATTATACTGAATGGTTACCAAATAAATTGGATTATTCTAATTCAAATAGTAAAATATCATCTGAACTTAAAATTGAATATAGTCAGTATTCACCTGAATTCAACGATCAAATGGATTAAATAAAACTATNTGGATTATTCTATAAACATAA] [+] EMBL CD122791 [AATTGCGAAATAATACAAAACTCTTTGAACATAAATATTCATCAGAATATGGACAACATCATCAATTTCAAATTACATCATTGTCGAATAGAAAACAACGTCTATTACGTAATCATCACCAACATCCTCCTCGTGCTCCTCATCCGCCGCCGCCTCCTCCTCCTCATCCTCTGCATAATCCAATTCAATTAAATGATAAACCTATGATGACTAGTAATTTAATTTCATCAAAATATGAATCAAAAAGTCAAAATTATTTAGATTTAAATCAATCACCTAAAATGCGTTTTATACGTAAATTAAATACATTTGCTAGTGTACCTGATTTA ] [+] EMBL CD133921 [ CTGCATAATCCAATTCAATTAAATGATAAACTTATGATGACTAGTAATTTAATTTCATCAAAATATGAATCAAAAAGTCAAAATTATTTAGATTTAAATCAATCACCTAAAATGCGTTTTATACGTAAATTAAATACATTTGCTAGTGTACCTGATTTAACTAAAAAACCAATACGTAGTGCATTAAAAGGTAGTAGAAATAGCAGTGTTCATCGATCAATAAATGATCATGAACAAGTTGTCCGATCACTAAATCCTTTAAATTCTGATTCATTTTCATTAACACCACTAATACTAGAAGATGAAATGAGACACTTAGTACATTTACATTCATCAGATCTATCCAATACAATCATGAATATTAAACCAATAAGTAAAACAGATTATACTGAATGGTTACCAAATAAATTGGATTATTCTAATTCAAATAGTAAAATATCATCTGAACTTAAAATTGAATATAGTCAGTATTCACCTGAATTCAACGATCAAATGGATTAAATAAAACTATNTGGATTATTCTATAAACATAA] consensusID : consensus_6601#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 406 fasta sequence [GACTTCAAATGAAGTGAATCTATCACCTGATCATCAAATGAATGATGATATAATCATTAATAATGATATAAAAGAAGATGATAATGATGATGAAGAAAATGAACATATAGTTGAAGATTCAAAGTCATCAACCCCAAGATTTCATTCAAAACTTTTGAGACGTGATAGTATGGAATGTTATCTTGAAACAAACAAAGCACATGATATACGTCATGAAAGGGATCATCCACTTTCTGATCTTATTGAAAGTATGAAAGACGGTAAACATTGTTATGGTGATTCAACAAATATAAGGACGGACTTTGTAGAGGAAGAAGAAGAAGAAGAAGAAGAAAATACAACATCATCAATTTCAAATTACATCATTGTCGAATAGAAAACAACGTCTATTACGTAATCATCACCA] [-] EMBL CD069775 [GACTTCAAATGAAGTGAATCTATCACCTGATCATCAAATGAATGATGATATAATCATTAATAATGATATAAAAGAAGATGATAATGATGATGAAGAAAATGAACATATAGTTGAAGATTCAAAGTCATCAACCCCAAGATTTCATTCAAAACTTTTGAGACGTGATAGTATGGAATGTTATCTTGAAACAAACAAAGCACATGATATACGTCATGAAAGGGATCATCCACTTTCTGATCTTATTGAAAGTATGAAAGACGGTAAACATTGTTATGGTGATTCAACAAATATAAGGACGGACTTTGTAGAGGAAGAAGAAGAAGAAGAAGAAGAAAATACAACATCATCAATTTCAAATTACATCATTGTCGAATAGAAAACAACGTCTATTACGTAATCATCACCA] [+] EMBL CD069768 [GACTTCAAATGAAGTGAATCTATCACCTGATCATCAAATGAATGATGATATAATCATTAATAATGATATAAAAGAAGATGATAATGATGATGAAGAAAATGAACATATAGTTGAAGATTCAAAGTCATCAACCCCAAGATTTCATTCAAAACTTTTGAGACGTGATAGTATGGAATGTTATCTTGAAACAAACAAAGCACATGATATACGTCATGAAAGGGATCATCCACTTTCTGATCTTATTGAAAGTATGAAAGACGGTAAACATTGTTATGGTGATTCAACAAATATAAGGACGGACTTTGTAGAGGAAGAAGAAGAAGAAGAAGAAGAAAATACAACATCATCAATTTCAAATTACATCACTGTCGAATAGAAAACAACGTCTATTACGTAATCATCACC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6601#0 AATTGCGAAATAATACAAAACTCTTTGAACATAAATATTCATCAGAATATGGACAACATC 60 consensus_6601#1 ------------------------------------------------------------ consensus_6601#0 ATCAATTTCAAATTACATCATTGTCGAATAGAAAACAACGTCTATTACGTAATCATCACC 120 consensus_6601#1 ------------------------------------------------------------ consensus_6601#0 AACATCCTCCTCGTGCTCCTCATCCGCCGCCGCCTCCTCCTCCTCATCCTCTGCATAATC 180 consensus_6601#1 ------------------------------------------------------------ consensus_6601#0 CAATTCAATTAAATGATAAACCTATGATGACTAGTAATTTAATTTCATCAAAATATGAAT 240 consensus_6601#1 ------------------------------------------------------------ consensus_6601#0 CAAAAAGTCAAAATTATTTAGATTTAAATCAATCACCTAAAATGCGTTTTATACGTAAAT 300 consensus_6601#1 --------------GACTTCAAATGAAGTGAATC---TATCACCTGATCATCAAATGAAT 43 * ** * * ** * **** ** * * * * * *** consensus_6601#0 TA-AATACATTTGCTAGTGTACCTGATTTAACTAAAAAACCAATACGTAGTGCATTAAAA 359 consensus_6601#1 GATGATATAATCATTAATAA---TGATATAA--AAGAAGATGATA-ATGATG-ATGAAGA 96 * *** * * ** * **** *** ** ** *** * ** ** ** * consensus_6601#0 GGTAGTAGAAATAGCAGTGTTCATCGATCAATAAATGATCATGAACAAGTTGTCCGATCA 419 consensus_6601#1 AAATGAACATATAGTTGAA------GATTCA-AAGTCATCAACCCCAAGATTTC--AT-- 145 * * * **** * *** * ** * **** **** * ** ** consensus_6601#0 CTAAATCCTTTAAATTCTGATTCATTTTCATTAACACCACTAATACTAGAAGATGAAATG 479 consensus_6601#1 TCAAAACTTTTGAGACGTGATA-GTATGGAATGTTATC-TTGAAACAAACAAAGCACATG 203 *** * *** * **** * * * * * * * * ** * * * * *** consensus_6601#0 AGACACTTAGTACATTTACATTCATCAGATCTATCCAATACAATCATGAATATTAAACCA 539 consensus_6601#1 ATATACGTCATGAAA--GGGATCATCCA--CTTTCTGATCTTATTGAAAGTATGAA---A 256 * * ** * * * ***** ** ** ** ** * *** ** * consensus_6601#0 ATAAGTAAAACAGATTATACTGAATGGTTACCAAATAAATTGGATTATTCTAATTCAAAT 599 consensus_6601#1 GACGGTAAACATTGTTATGGTGATTCAACAAATATAAGGACGGACT-TTGTAGAGGAAGA 315 ***** **** *** * * * * *** * ** ** ** consensus_6601#0 AGTAAAATATCATCTGAACTTAAAATTGAATATAGTCAGTATTCACCTGAATTCAACGAT 659 consensus_6601#1 AGAAGAAGAAGA----AGAAGAAAATACAACATCATCAATTTCAAATTACATC--ATTGT 369 ** * ** * * * ***** ** ** *** * * * * ** * * consensus_6601#0 CAAATGGATTAAATAAAACTATNTGGATTATTCTATAAACATAA 703 consensus_6601#1 CGAATAGA-------AAACAACGTCTATTACGTAATCATCACCA 406 * *** ** **** * * **** ** * ** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||