These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6735#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1075 fasta sequence [CCGAGGGCCANAATTCGGCACGAGGGCTTGTCCACAAATGTTAGTTAATTTCAAAAAGTAAATGTTTTACCCACAAAATGTCCTAGATTGTGAAACTTATCTTCTATCAATGAATGAATAGAATTCAGTCCGTGTTGCATGCTTTAAGTGTTCATATTAACTATTATATTTCTGGTTTATTTGTTCTGTTTGAAGATCATAACCTCGATGTCAAAAGTAAGGGGAGGAGTCATTCAATCAAACCTTATTTTAGTAAGAATCATTTTTGCCCACTTGACTCATATTTTCTTCTGTGGTCTAATTATCTACCTCTTACGTAAAACTGATCGATCACTAAATAGTCACTTAAATATATATCACTCGGGGTCGCTGTTGAATAGGTTAATCTAAACTCCAACGGACTCATCTTGAGTGTTCTCATGAAATGTAATGACCAGTTTTCTAAGAATAATCTCGACCACAGTATTCAGTTGTTTGTACACTAACTCAGTTTTTTAATGGTTTTTAAAATTAAAAACAAAAACTTTTTATTTACAAATTTTTTGTATTCTGCCCATAGTTGTTTGGTCGTTCCTTTGTTTTGTTTTGTATTGTATTGCCACATGCTGAATTCCATTCTGCGTCTACAACTTATTGGC-TTTTCTTTTCATGGAGTCTCATTGAAGTTGTTAGATATCCATATTACATTTTGTCATTATTAAGTTTTCAAAATGGACTTATCACTTATTTACGTCATACATTATGGATAATATTATATCCCATTGGATTTATATGTGAAGGCAAATTAATCATTCGATCACTGCCTTTATTGATGGAGTCCCGAAAATTCTGTTTAGAACTACCGAATCCAGCTAATGTCAGCTTTGATTTTACAACTTTTCTTCAAATATATATGTTCTCTATGTCTTTTGGTTTATACTATAATATGAGACATTTATATTTGAGACGACGTAAAATAATTGGTCCTCGACCAATTAAAGGAGCTGATCAAATGGGTTATCTTTCTTTTATACCATTCTTACGTTCATTAGTTCATGGATCAAAGATGAAAAATGGCTCTACTACCACTAGTACT] [+] EMBL CD082779 [CCGAGGGCCANAATTCGGCACGAGGGCTTGTCCACAAATGTTAGTTAATTTCAAAAAGTAAATGTTTTACCCACAAAATGTCCTAGATTGTGAAACTTATCTTCTATCAATGAATGAATAGAATTCAGTCCGTGTTGCATGCTTTAAGTGTTCATATTAACTATTATATTTCTGGTTTATTTGTTCTGTTTGAAGATCATAACCTCGATGTCAAAAGTAAGGGGAGGAGTCATTCAATCAAACCTTATTTTAGTAAGAATCATTTTTGCCCACTTGACTCATATTTTCTTCTGTGGTCTAATTATCTACCTCTTACGTAAAACTGATCGATCACTAAATAGTCACTTAAATATATATCACTCGGGGTCGCTGTTGAATAGGTTAATCTAAACTCCAACGGACTCATCTTGAGTGTTCTCATGAAATGTAATGACCAGTTTTCTAAGAATAATCTCGACCACAGTATTCAGTTGTTTGTACACTAACTCAGTTTTTTAATGGTTTTTAAAATTAAAAACAAAAACTTTTTATTTACAAATTTTTTGTATTCTGCCCATAGTTGTTTGGTCGTTCCTTTGTTTTGTTTTGTATTGTATTGCCACATGCTGAATTCCATTCTGCGTCTACAACTTATTGGC TNTTCTTTTCATG ] [-] EMBL CD074974 [ tttttcAGTTGTTTGGTCGTTCCTTTGTTTTGTTTTGTATTGTATTGCCACATGCTGAATTCCATTCTGCGTCTACAACTTATTGGC TTTTCTTTTCATGGAGTCTCATTGAAGTTGTTAGATATCCATATTACATTTTGTCATTATTAAGTTTTCAAAATGGACTTATCACTTATTTACGTCATACATTATGGATAATATTATATCCCATTGGATTTATATGTGAAGGCAAATTAATCATTCGATCACTGCCTTTATTGATGGAGTCCCGAAAATTCTGTTTAGAACTACCGAATCCAGCTAATGTCAGCTTTGATTTTACAACTTTTCTTCAAATATATATGTTCTCTATGTCTTTTGGTTTATACTATAATATGAGACATTTATATTTGAGACGACGTAAAATAATTGGTCCTCGACCAATTAAAGGAGCTGATCAAATGGGTTATCTTTCTTTTATACCATTCTTACGTTCATTAGTTCATGGATCAAAGATGAAAAATGGCTCTACTACCACTAGTACT] [-] EMBL CD076371 [ CAAC TATTGGCTTTTTCTTTTCATGGAGTCTCATTGAAGTTGTTAGATATCCATATTACATTTTGTCATTATTAAGTTTTCAAAATGGACTTATCACTTATTTACGTCATACATTATGGATAATATTATATCCCATTGGATTTATATGTGAAGGCAAATTAATCATTCGATCACTGCCTTTATTGATGGAGTCCCGAAAATTCTGTTTAGAACTACCGAATCCAGCTAATGTCAGCTTTGATTTTACAACTTTTCTTCAAATATATATGTTCTCTATGTCTTTTGGTTTATACTATAATATGAGACATTTATATTTGAGACGACGTAAAATAATTGGTCCTCGACCAATTAAAGGAGCTGATCAAATGGGTTATCTTTCTTTTATACCATTCTTACGTTCATTAGTTCATGGATCACACATGAAAAATGGCTCTACTACCACTAGTACT] consensusID : consensus_6735#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence [TGGTGCCGGCGCCCCCCTCGACACGCCGTTATTGATCGAAGTCCCGCGAATCTGTTTGAACTACCGAGATCAGCTAATGTCAGCGTTTAGTTTCAACATTTCTTCAAAAATATATGATCTCTATGTCTTTTGGGTATACTATATATGAGACATTTTATTTGAGACGACGCTAAATTAATGGTCTCGACCAATTAAAGGGCTGATCAAATGGGTATCCTCTTTATACCACTCTACGGTCAATAGTTCATGGATCAAAGATGAAAATGGCTCTACTACCACTAGTACTAGTACCATTAAAAAGGAGTATATAGATAATCGTAGCAGTTTACCGGAATTAAACTAATTTATTTCTTTGCATTACATGTATAATTTCCATGATGTAATAATTGTTAAATGATGTGATATTTTATTCTATGTATCTTAATAAATAAATAAATTGTATTTT] [-] EMBL AW063002 [TGGTGCCGGCGCCCCCCTCGACACGCCGTTATTGATCGAAGTCCCGCGAATCTGTTTGAACTACCGAGATCAGCTAATGTCAGCGTTTAGTTTCAACATTTCTTCAAAAATATATGATCTCTATGTCTTTTGGGTATACTATATATGAGACATTTTATTTGAGACGACGCTAAATTAATGGTCTCGACCAATTAAAGGGCTGATCAAATGGGTATCCTCTTTATACCACTCTACGGTCAATAGTTCATGGATCAAAGATGAAAATGGCTCTACTACCACTAGTACTAGTACCATTAAAAAGGAGTATATAGATAATCGTAGCAGTTTACCGGAATTAAACTAATTTATTTCTTTGCATTACATGTATAATTTCCATGATGTAATAATTGTTAAATGATGTGATATTTTATTCTATGTATCTTAATAAATAAATAAATTGTATTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6735#0 CCGAGGGCCANAATTCGGCACGAGGGCTTGTCCACAAATGTTAGTTAATTTCAAAAAGTA 60 consensus_6735#1 ------------------------------------------------------------ consensus_6735#0 AATGTTTTACCCACAAAATGTCCTAGATTGTGAAACTTATCTTCTATCAATGAATGAATA 120 consensus_6735#1 ------------------------------------------------------------ consensus_6735#0 GAATTCAGTCCGTGTTGCATGCTTTAAGTGTTCATATTAACTATTATATTTCTGGTTTAT 180 consensus_6735#1 ----------------------------------TGGTGCCGGCGCCCCCCTCGACACGC 26 * * * * consensus_6735#0 TTGTTCTGTTTGAAGATCATAACCTCGATGTCAAAAGTAAGGGGAGGAGTCATTCAATCA 240 consensus_6735#1 CGTTATTGATCGAAGTCCCGCGAATC--TGTTTGAACTACCGAGATCAGCTAAT--GTCA 82 * ** * **** * ** *** ** ** * ** ** * * *** consensus_6735#0 AACCTTATTTTAGTAAGAATCATTTTTGCCCACTTGACTCATAT-TTTCTTCTGTGGTCT 299 consensus_6735#1 GCGTTTAGTTT--CAACATTTCTTCAAAAATATATGATCTCTATGTCTTTTGGGTATACT 140 *** *** ** * * ** * *** *** * * ** ** ** consensus_6735#0 AATTATCT-ACCTCTTACGTAAAACTGATCGATCACTAAATAGTCACTTAAATATATATC 358 consensus_6735#1 ATATATGAGACATTTTATTTGAGAC--GACGCTAAATTAATGGTCTCG---------ACC 189 * *** ** * *** * * ** ** * * * *** *** * * * consensus_6735#0 ACTCGGGGTCGCTGTTGAATAGGT-TAATCTAAACTCCAACGGACTCATCTTGAGTGTTC 417 consensus_6735#1 AATTAAAGGGCTGATCAAATGGGTATCCTCTTTATACCACTCTACG-GTCAATAGTTCAT 248 * * * * *** *** * *** * *** ** ** *** consensus_6735#0 TCATGAAATGTAATGACCAGTTTTCTAAGAATAATCTCGACCACAGTATTCAGTTGTTTG 477 consensus_6735#1 GGATCAAAGATGAAAATGGCTCTACTACCACTAGTACTAGTACCATTAAAAAGGAGTATA 308 ** *** * * * * * *** * ** * ** ** ** ** * consensus_6735#0 TACACTAACTCAGTTTTTTAATGGTTTTTAAAATTAAAAACAAAAACTTTTTATT-TACA 536 consensus_6735#1 TAGATAATCGTAGCAGTTTACCGGAATT--AAACTAAT--TTATTTCTTTGCATTACATG 364 ** * * * ** **** ** ** *** *** * **** *** * consensus_6735#0 AATTTTTTGTATTCTGCCCATAGTTGTTTGGTCGTTCCTTTGTTTTGTTTTGTATTGTAT 596 consensus_6735#1 TATAATTTCCATGATGTA-ATAATTGTTAAAT-GATGTGATATTTTATTCTATGT-ATCT 421 ** *** ** ** *** ***** * * * * **** ** * * * * * consensus_6735#0 TGCCACATGC-TGAATTCCATTCTGCGTCTACAACTTATTGGCTTTTCTTTTCATGGAGT 655 consensus_6735#1 TAATAAATAAATAAATTGTATTTT------------------------------------ 445 * * ** * **** *** * consensus_6735#0 CTCATTGAAGTTGTTAGATATCCATATTACATTTTGTCATTATTAAGTTTTCAAAATGGA 715 consensus_6735#1 ------------------------------------------------------------ consensus_6735#0 CTTATCACTTATTTACGTCATACATTATGGATAATATTATATCCCATTGGATTTATATGT 775 consensus_6735#1 ------------------------------------------------------------ consensus_6735#0 GAAGGCAAATTAATCATTCGATCACTGCCTTTATTGATGGAGTCCCGAAAATTCTGTTTA 835 consensus_6735#1 ------------------------------------------------------------ consensus_6735#0 GAACTACCGAATCCAGCTAATGTCAGCTTTGATTTTACAACTTTTCTTCAAATATATATG 895 consensus_6735#1 ------------------------------------------------------------ consensus_6735#0 TTCTCTATGTCTTTTGGTTTATACTATAATATGAGACATTTATATTTGAGACGACGTAAA 955 consensus_6735#1 ------------------------------------------------------------ consensus_6735#0 ATAATTGGTCCTCGACCAATTAAAGGAGCTGATCAAATGGGTTATCTTTCTTTTATACCA 1015 consensus_6735#1 ------------------------------------------------------------ consensus_6735#0 TTCTTACGTTCATTAGTTCATGGATCAAAGATGAAAAATGGCTCTACTACCACTAGTACT 1075 consensus_6735#1 ------------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||