These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6737#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 888 fasta sequence [TACTGTGCTTTAATATCGGGTAGAAATATACGGGGTGCAACCGTAGCTCTGATTGGTTCACTCAAGGCCGTCCTGGAGCTTTCACCATACGTTCTTAGCACACAGTTGTTTTCTAAATAATCGCTGTTTTGTATGACTAAACATAGGGAAAGTCTTCAAAGTACTTCGTTGTTTCGTCTTCTGAACTTTGAACTTTTCGTCAAACCAGTCGTAATATCTTTCGGGCTATCTGCAATAACTGGATGTGTAGCATATCTGGTCTACNNNNNNNNNNNNNNNNNNNNNNNNNAGGATCTCTCGGCAAGTAGCAACATCAATAATAACCATAAGTCTAACTGGGATTGATCTTCGAGATGCCACTCTACAACACAGTCTTGTACATTCCTCCCATTGAACCCCCAAGAATCACTGATTTTGATTCCAGCACTTCTCACACGAAGCTTGTTTTGAAGAATTTGAGGCGCAACTTTCTAAGTTTTGCCATTGTAGTCAATCGAACGATGTTCATAGTCAATGTTGTGTACCTGGAGTTGGAAATTTTACACATCCAGTGAATGAAAGATACCTACGTCGTACTGTAGATGAACAATTAAGAGATCTCACACTTGAATAGTAATTNTGATCGAAACTCGATTTCTATCTTACATCGACGTGGAAGAATTGACTCTCACAGAGCTCAAGATTCTGTCACACAATCCCCTCAGCGAATCGCTGAGGCCAGAAGCAGTGATAATTTTCTTGTGGATGAAAANAAGCCGAGGCTACCCGTGCCACAAAGAGGACTTGACGCACGGATAAACCCTTTCGATCTGGTTATTAAAATTATAGGGGGTATTATTTTCCCTTTTGGGAAGCATCACTGATGCTCAGGCAAAAAGAAATATAATT] [+] EMBL CD080961 [TACTGTGCTTTAATATCGGGTAGAAATATACGGGGTGCAACCGTAGCTCTGATTGGTTCACTCAAGGCCGTCCTGGAGCTTTCACCATACGTTCTTAGCACACAGTTGTTTTCTAAATAATCGCTGTTTTGTATGACTAAACATAGGGAAAGTCTTCAAAGTACTTCGTTGTTTCGTCTTCTGAACTTTGAACTTTTCGTCAAACCAGTCGTAATATCTTTCGGGCTATCTGCAATAACTGGATGTGTAGCATATCTGGTCTACNNNNNNNNNNNNNNNNNNNNNNNNNAGGATCTCTCGGCAAGTAGCAACATCAATAATAACCATAAGTCTAACTGGGATTGATCTTCGAGATGCCACTCTACAACACAGTCTTGTACATTCCTCCCATTGAACCCCCAAGAATCACTGATTTTGATTCCAGCACTTCTCACACGAAGCTTGTTTTGAAGAATTTGAGGCGCAACTTTCTAAGTTTTGCCATTGTAGTCAATCGAACGATGTTCATAGTCAATGTTGTGTACCTGGAGTTGGAAATTTTACACATCCAGTGAATGAAAGATACCTACGTCGTACTGTAGATGAACAATTAAGAGATCTCACACTTGAATAGTAATTNTGATCGAAACTCGATTTCTATCTTACATCGACGTGGAAGAATTGACTCTCACAGAGCTCAAGATTCTGTCACACAATCCCCTCAGCGAATCGCTGAGGCCAGAAGCAGTGATAATTTTCTTGTGGATGAAAANAAGCCGAGGCTACCCGTGCCACAAAGAGGACTTGACGCACGGATAAACCCTTTCGATCTGGTTATTAAAATTATAGGGGGTATTATTTTCCCTTTTGGGAAGCATCACTGATGCTCAGGCAAAAAGAAATATAATT] consensusID : consensus_6737#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 684 fasta sequence [TCTCTCGGCAAGTAGCAACATCAATAATAACCATAAGTCTAACTGGGATTGATCTTCGAGATGCCACTCTACAACACAGTCTTGTACATTCCTCCCATTGAACCCCCAAGAATCACTGATTTTGATTCCAGCACTTCTCACACTAACGACGACAGAATGAAAATTGCTGAAGTAGAAGCTTGTTTTGAAGAATTTGAGGCGCAACTTTCTAAGTTTTGCCATTGTAGTCAATCGAACGATGTTCATAGTCAATGTTGTGTACCTGGAGTTGGAAATTTTACACATCCAGTGAATGAAAGATACCTACGTCGTACTGTAGATGAACAATTAAGAGATCTCACACTTGAAGGTGAACGCAATCGAACACGTGTTGATCGAGATCCTCAGAATAGTAATTTTGATCGAAACTCGATTTCCATCTTACATCGACGTGGAAGATTTGACTCTCACAGAGCTCAAGATTCTGTCACACAATCCTCAAGCGGAATCGCTGAGGCAGAAAGCAGTGATAATTTTCTTGTGGATGAAGAAGAAGCCGAGGCTACCGTTACAACAGAAGAAGAACTTGACGCCACGGAATAAACCTTTTCGATCTTTGTTATTTAGAATTATTAGGTGTTATTATTTTCCGTTGAGGGAAAGTCATCAACTGATGCTCATGTCTTCGATGTAAATAAATATGTA] [-] EMBL CD074982 [TCTCTCGGCAAGTAGCAACATCAATAATAACCATAAGTCTAACTGGGATTGATCTTCGAGATGCCACTCTACAACACAGTCTTGTACATTCCTCCCATTGAACCCCCAAGAATCACTGATTTTGATTCCAGCACTTCTCACACTAACGACGACAGAATGAAAATTGCTGAAGTAGAAGCTTGTTTTGAAGAATTTGAGGCGCAACTTTCTAAGTTTTGCCATTGTAGTCAATCGAACGATGTTCATAGTCAATGTTGTGTACCTGGAGTTGGAAATTTTACACATCCAGTGAATGAAAGATACCTACGTCGTACTGTAGATGAACAATTAAGAGATCTCACACTTGAAGGTGAACGCAATCGAACACGTGTTGATCGAGATCCTCAGAATAGTAATTTTGATCGAAACTCGATTTCCATCTTACATCGACGTGGAAGATTTGACTCTCACAGAGCTCAAGATTCTGTCACACAATCCTCAAGCGGAATCGCTGAGGCAGAAAGCAGTGATAATTTTCTTGTGGATGAAGAAGAAGCCGAGGCTACCGTTACAACAGAAGAAGAACTTGACGCCACGGAATAAACCTTTTCGATCTTTGTTATTTAGAATTATTAGGTGTTATTATTTTCCGTTGAGGGAAAGTCATCAACTGATGCTCATGTCTTCGATGTAAATAAATATGTA] [-] EMBL BG930367 [TCTCTCGGCAAGTAGCAACATCAATGATAACCATAAGTCTAACTGGGATTGATCTTCGAGATGCCACTCTACAACACAGTCTTGTACATTCCTCCCATTGAACC ] [-] EMBL CD190564 [ TCAATCGAACGATGTTCATAGTCAATGTTGTGTACCTGGAGTTGGAAATTTTACACATCCAGTGAATGAAAGATACCTACGTCGTGCTGTAGATGAACAATTAAGAGATCTCACTCTTGAAGGTGAACGCAATCGGACACGTGTTGATCGAGATCCTCAGAATAGTAATTT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6737#0 TACTGTGCTTTAATATCGGGTAGAAATATACGGGGTGCAACCGTAGCTCTGATTGGTTCA 60 consensus_6737#1 ------------------------------------------------------------ consensus_6737#0 CTCAAGGCCGTCCTGGAGCTTTCACCATACGTTCTTAGCACACAGTTGTTTTCTAAATAA 120 consensus_6737#1 ------------------------------------------------------------ consensus_6737#0 TCGCTGTTTTGTATGACTAAACATAGGGAAAGTCTTCAAAGTACTTCGTTGTTTCGTCTT 180 consensus_6737#1 ------------------------------------------------------------ consensus_6737#0 CTGAACTTTGAACTTTTCGTCAAACCAGTCGTAATATCTTTCGGGCTATCTGCAATAACT 240 consensus_6737#1 ------------------------------------------------------------ consensus_6737#0 GGATGTGTAGCATATCTGGTCTACNNNNNNNNNNNNNNNNNNNNNNNNNAGGATCTCTCG 300 consensus_6737#1 -----------------------------------------------------TCTCTCG 7 ******* consensus_6737#0 GCAAGTAGCAACATCAATAATAACCATAAGTCTAACTGGGATTGATCTTCGAGATGCCAC 360 consensus_6737#1 GCAAGTAGCAACATCAATAATAACCATAAGTCTAACTGGGATTGATCTTCGAGATGCCAC 67 ************************************************************ consensus_6737#0 TCTACAACACAGTCTTGTACATTCCTCCCATTGAACCCCCAAGAATCACTGATTTTGATT 420 consensus_6737#1 TCTACAACACAGTCTTGTACATTCCTCCCATTGAACCCCCAAGAATCACTGATTTTGATT 127 ************************************************************ consensus_6737#0 CCAGCACTTCTCACAC-------------------------------GAAGCTTGTTTTG 449 consensus_6737#1 CCAGCACTTCTCACACTAACGACGACAGAATGAAAATTGCTGAAGTAGAAGCTTGTTTTG 187 **************** ************* consensus_6737#0 AAGAATTTGAGGCGCAACTTTCTAAGTTTTGCCATTGTAGTCAATCGAACGATGTTCATA 509 consensus_6737#1 AAGAATTTGAGGCGCAACTTTCTAAGTTTTGCCATTGTAGTCAATCGAACGATGTTCATA 247 ************************************************************ consensus_6737#0 GTCAATGTTGTGTACCTGGAGTTGGAAATTTTACACATCCAGTGAATGAAAGATACCTAC 569 consensus_6737#1 GTCAATGTTGTGTACCTGGAGTTGGAAATTTTACACATCCAGTGAATGAAAGATACCTAC 307 ************************************************************ consensus_6737#0 GTCGTACTGTAGATGAACAATTAAGAGATCTCACACTTGAA------------------- 610 consensus_6737#1 GTCGTACTGTAGATGAACAATTAAGAGATCTCACACTTGAAGGTGAACGCAATCGAACAC 367 ***************************************** consensus_6737#0 ----------------------TAGTAATTNTGATCGAAACTCGATTTCTATCTTACATC 648 consensus_6737#1 GTGTTGATCGAGATCCTCAGAATAGTAATTTTGATCGAAACTCGATTTCCATCTTACATC 427 ******** ****************** ********** consensus_6737#0 GACGTGGAAGAATTGACTCTCACAGAGCTCAAGATTCTGTCACACAATCCCCTCAGCGAA 708 consensus_6737#1 GACGTGGAAGATTTGACTCTCACAGAGCTCAAGATTCTGTCACACAATCCTCAAGCGGAA 487 *********** ************************************** * *** consensus_6737#0 TCGCTGAGGCCAGAAGCAGTGATAATTTTCTTGTGGATGAA-AANAAGCCGAGGCTACCC 767 consensus_6737#1 TCGCTGAGGCAGAAAGCAGTGATAATTTTCTTGTGGATGAAGAAGAAGCCGAGGCTACCG 547 ********** **************************** ** ************** consensus_6737#0 GTGCCACAAAG--AGGACTTGACGC-ACGGA-TAAACCCTTTCGATCTG-GTTATT-AAA 821 consensus_6737#1 TTACAACAGAAGAAGAACTTGACGCCACGGAATAAACCTTTTCGATCTTTGTTATTTAGA 607 * * *** * ** ********* ***** ****** ********* ****** * * consensus_6737#0 ATTAT-AGGGGGTATTATTTTCCCTTTTGGGAAG--CATCA-CTGATGCTCAGG-CAAAA 876 consensus_6737#1 ATTATTAGGTGTTATTATTTTCCGTTGAGGGAAAGTCATCAACTGATGCTCATGTCTTCG 667 ***** *** * *********** ** ***** ***** ********** * * consensus_6737#0 AGAAATATAATT----- 888 consensus_6737#1 ATGTAAATAAATATGTA 684 * * **** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||