These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6766#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 749 fasta sequence [CCGGAGGCCATTAATTCGGCACGAGGGAATTTGTGATTGGAATGTATTTACCTCCTTTGTTTTAATATTATCTCTTTTGTACTCAGAGTATATCATTATATTCAGCTTCATGTTCATTTTACATGTTATTTTCTAATTATAAAGTAATCAAGATTGTTATCTACCGCTAAATGATAGAAAAAATGATAACATGTTTCATCCGTTCACATTCATGATGGTATATATCTCCTATTGAATTACTGTCTATGCTAGAAACATTCGTTGAATTGAAAAAAGAAGTAAAGACCGAGCACAAGAGAGATATGTAGAACGAAATACTCTTGTTTTCTGGACCTGACATTCATCATCACTGATGAGACAATATATATCTTACCTTCATAAATCAGTTCGTTCTTTCTTCTCGTTTTACTGTCATAAATCTTTGTAAAATAGACTATTACTTGTGTCAATCTTAATCGCAGCAATAATTAACAATTTTTATTATCTTTGTTATTGTTATTTAACATTGAAAGATATCTATTGTTGCAGTTTTTTCCTGGGGGATGGAAAAGATTCTTCCATTCATTTCTAACATTCAGTTTATCGTGCAGTTCTATTGATTTGTTATTATATTTTGCTGACATTGCTTCAGAACTATTTTTTTAAACTCTTGTTTAATGCCAATTTGTTTTTTTGGATATTTCATAGGCATTTACTATCATCATCACCGTCATAATAATAATTATATCATCATTTATTTATTTAACACA] [+] EMBL CD081626 [CCGGAGGCCATTAATTCGGCACGAGGGAATTTGTGATTGGAATGTATTTACCTCCTTTGTTTTAATATTATCTCTTTTGTACTCAGAGTATATCATTATATTCAGCTTCATGTTCATTTTACATGTTATTTTCTAATTATAAAGTAATCAAGATTGTTATCTACCGCTAAATGATAGAAAAAATGATAACATGTTTCATCCGTTCACATTCATGATGGTATATATCTCCTATTGAATTACTGTCTATGCTAGAAACATTCGTTGAATTGAAAAAAGAAGTAAAGACCGAGCACAAGAGAGATATGTAGAACGAAATACTCTTGTTTTCTGGACCTGACATTCATCATCACTGATGAGACAATATATATCTTACCTTCATAAATCAGTTCGTTCTTTCTTCTCGTTTTACTGTCATAAATCTTTGTAAAATAGACTATTACTTGTGTCAATCTTAATCGCAGCAATAATTAACAATTTTTATTATCTTTGTTATTGTTATTTAACATTGAAAGATATCTATTGTTGCAGTTTTTTCCTGGGGGATGGAAAAGATTCTTCCATTCATTTCTAACATTCAGTTTATCGTGCAGTTCTATTGATTTGTTATTATATTTTGCTGACATTGCTTCAGAACTATTTTTTTAAACTCTTGTTTAATGCCAATTTGTTTTTTTGGATATTTCATAGGCATTTACTATCATCATCACCGTCATAATAATAATTATATCATCATTTATTTATTTAACACA] [+] EMBL CD093354 [ AATGTATTTACCTCCTTTGTTTTAATATTATCTCTTTTGTACTCAGAGTATATCATTATATTCAGCTTCATGTTCATTTTACAAGTTATTTTCTAATTATAAAGTAATCAAGATTGTTATCTACCGCTAAATGATAGAAAAAATGATAACATGTTTCATCCGTTCACATTCATGATGGTATATGTCTCCTATTGAATTACTGTCTATGCTAGAAACATTCGTTGAATTGAAAAAAGAAGTAAAGACCGAGCACAAGAGAGATATGTAGAACGAAATACTCTTGTTTTCTGGACCTGACATTCATCATCACTGATGAGACCATATATATCTTACCTTCATAAATCAGTTCGTTCTTTCTTCTCGTTTTACTGTCATAAATCTTTGTAAAATAGACTATTACTTGTGTCAATCTTAATCGCAGCAATAATTAACAATTTTTATTATCTTTGTTATTGTTATTTAACATTGAAAGATATCTATTGTTGCAGTTTTTTCCTGGGGGATGGAAAAGATTCTTCCATTCATTTCTAACATTCAGNTTATCGTGCAGTTCTATTGATTTGTTATTATATTTTGCTGACATTGCTTCA ] [-] EMBL CD197134 [ AACGAAATACTCTTGTTTTCTGGACCTGACATTCATCATCACTGATGAGACAATATATATCTTACCTTCATAAATCAGTTCGTTCTTTCTTCTCGTTTTACTGTCATAAATCTTTGTAAAATAGACTATTACTTGTGTCAATCTTAATCGCAGCAATAATTAACAATTTTTATTATCTTTGTTATTGTTATTTAACATTGAAAGATATCTATTGTTGCAGTTTTTTCCTGGGGGATGGAAAAGATTCTTCCATTCATTTCTAACATTCAGTTTATCGTGCAGTTCTATTGATTTGTTATTATATTTTGCTGACATTGCTTCAGAACTAT ] consensusID : consensus_6766#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 589 fasta sequence [AAGTTTCTGCATTAACCAAAGGTGCTATACCCCTGATCGGTGTTGGTGGTATCAACTGCGGTGAAGATGCATTGTCCAAGTTGAATGCCGGTGCTAGCTTAATGCAATTATATACAAGTTTTGTTTATCAGGGACCGCCGGTTGCTCATAAAGTCGCGGTTGGTGGTAAACATCGAACAAAGTGAGAACATGTTCAATGGTCATGCGAAAAACTATTGATCATTTGTTGGTTTAATTAATTGGTTCGAAATTTCTATTACTTGAGAAATTAAACGATAGAGTTTTCTTGGCTCTATTGGGTTGTATGGTAACCGCCAAACAACAAAAGAGATATATGAGAATTAATAAAACAAAGCAACAAAGTGATTGGTAGTTTACAACAATGTTCCAAATAATTTCATTATTTATTTATAAAAGACAAATAAACATTAGTGTCGATAGTGATAATAATGATAACAATACTGACACACAATGACTAGAAATAATGAACAAAGAAAATAGGGAAAAGGAACGATGTCTTTACATGGTGTATAAGGGGAATTACCTGGGATAAAAATTACAAATATATAATTACCATTGATACTACATT] [+] EMBL CD075448 [AAGTTTCTGCATTAACCAAAGGTGCTATACCCCTGATCGGTGTTGGTGGTATCAACTGCGGTGAAGATGCATTGTCCAAGTTGAATGCCGGTGCTAGCTTAATGCAATTATATACAAGTTTTGTTTATCAGGGACCGCCGGTTGCTCATAAAGTCGCGGTTGGTGGTAAACATCGAACAAAGTGAGAACATGTTCAATGGTCATGCGAAAAACTATTGATCATTTGTTGGTTTAATTAATTGGTTCGAAATTTCTATTACTTGAGAAATTAAACGATAGAGTTTTCTTGGCTCTATTGGGTTGTATGGTAACCGCCAAACAACAAAAGAGATATATGAGAATTAATAAAACAAAGCAACAAAGTGATTGGTAGTTTACAACAATGTTCCAAATAATTTCATTATTTATTTATAAAAGACAAATAAACATTAGTGTCGATAGTGATAATAATGATAACAATACTGACACACAATGACTAGAAATAATGAACAAAGAAAATAGGGAAAAGGAACGATGTCTTTACATGGTGTATAAGGGGAATTACCTGGGATAAAAATTACAAATATATAATTACCATTGATACTACATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6766#0 CCGGAGGCCATTAATTCGGCACGAGGGA---ATTTGTGATTGGAATGTAT----TTACCT 53 consensus_6766#1 ---AAGTTTCTGCATTAACCAAAGGTGCTATACCCCTGATCGGTGTTGGTGGTATCAACT 57 ** * *** ** * * * **** ** * * * * ** consensus_6766#0 CCTTTGTTTTAATATTATCTCTTTTGTACTCAGAGTATATCATTATATTCAGCTTCATGT 113 consensus_6766#1 GCGGTGAAGATGCATTGTCCAAGTTGAATGCCGGTGCTAGCTTAATG--CAATTATATAC 115 * ** *** ** *** * * * ** * * ** ** * ** consensus_6766#0 TCATTTTACATGTTATTTTCTAATTATAAAGTAATCAAGATTGTTATCTACCGCTAAATG 173 consensus_6766#1 AAGTTTTGTTTATCAGGGACCGCCGGTTGCTCA--TAAAGTCGCGGT-TGGTGGTAAACA 172 **** * * * * * * ** * * * * * **** consensus_6766#0 ATAGAAAAAATGATAACATGTTTCATCCGTTCACATTCATGATGGTATATATCTCCTATT 233 consensus_6766#1 TCGAACAAAGTGAGAACATGTT-CAATGGT---CATGCGAAAAACTATTGATCATTTGTT 228 * *** *** ******** ** ** *** * * *** *** * ** consensus_6766#0 GAATTACTGTCTATGCTAGAAACATTCGTTGAATTGAAAAAAGAAGTAA-AGACCGAGCA 292 consensus_6766#1 GGTTTAATTAATTGGTTCGAAATTTCTATT-ACTTGAGAAATTAAACGATAGAGTTTTCT 287 * *** * * * * **** * ** * **** *** ** * *** * consensus_6766#0 CAAGAGAGATATGTAGAACGAAATACTCTTGTTTTCTGGACCTGACATTCATCATCACTG 352 consensus_6766#1 TGGCTCTATTGGGTTGTATGGTAACCGCCAAACAACAAAA---GAGATATATGAGAATTA 344 * ** * * * * * * * * ** ** ** * * * consensus_6766#0 ATGAGACAATATATATCTTACCTTCATAAATCAGTTCGTTCTTTCTTCTCGTTTTACTGT 412 consensus_6766#1 ATAAAACAAAGCAACAAAGTGATTGGTAGTTTACAACAATGTTCCAAATAATTTCATTAT 404 ** * **** * ** ** * * * * ** * * *** * * * consensus_6766#0 CATAAATCTTTGTAAAATAGACTATTACTTGTGTCAATCTTAATCGCAGCAATAATTAAC 472 consensus_6766#1 TT---ATTTATAAAAGACAAATAAACATTAGTGTCGA---TAGTGATAATAATGAT-AAC 457 ** * * ** * * * * * * ***** * ** * * *** ** *** consensus_6766#0 AATTTTTAT-TATCTTTGTTATTGTTATTTAACATTGAAAGATATCTATTGTTGCAGTTT 531 consensus_6766#1 AATACTGACACACAATGACTAGAAATAATGAACAAAGAAAATAGGGAAAAGGAACGATGT 517 *** * * * * ** ** * **** **** * * * * * consensus_6766#0 TTTCCTGGGGGATGGAAAAGATTCTTCCATTCATTTCTAACATTCAGTTTATCGTGCAGT 591 consensus_6766#1 CTTTACATGGTGTATAAGGGGAATTACC-TGGGATAAAAATTACAAATATATAAT----T 572 ** ** * ** * * ** * * ** * * *** * * consensus_6766#0 TCTATTGATTTGTTATTATATTTTGCTGACATTGCTTCAGAACTATTTTTTTAAACTCTT 651 consensus_6766#1 ACCATTGATACTACATT------------------------------------------- 589 * ****** *** consensus_6766#0 GTTTAATGCCAATTTGTTTTTTTGGATATTTCATAGGCATTTACTATCATCATCACCGTC 711 consensus_6766#1 ------------------------------------------------------------ consensus_6766#0 ATAATAATAATTATATCATCATTTATTTATTTAACACA 749 consensus_6766#1 -------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||