These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6851#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 724 fasta sequence [CGAGGCTGAAGAACGTTGGACTGCTGTTGGTTATCCTGGTCACCTTTACGGTACTGTTAACGGGGGTTTAGGGCTTCTTGTTCAAGTTTCTCCAGTTTTATTTGCGTTTTTGAAAGAAGTCGAGTTTCGTTTATCAAATCTAGTTGTACCTGTTGGTGGATTTTCACATGATACATGGAGAGCTTTTAAAGCTGATCGCGAAATTAAGATGGCGCATAATTTCGTAGATGGTGATCTCATTGAAACAGTTACAGATTTAAGCATGGACGACAAGGCTAAATTAGTCAAAGGTTTACGAATACCGGTAAACATGAATGAATTCGGAACTGCTGGTTCAACGTGTACTACTGATCCTGAAACACGAGAGTGT-ACTGTGGAAGATTTAGTCAAAGTTGTCGAAGAAATGTCACGTCTTCATTAGTAACCAATGTGTAGCAAAGAAATCATACTGAATATTTATATCGATCTATTTATATTGATGCAATTGTTACCATTCATTGTCTTTACTTTTGCCTTTGATGATGAGATCCGCTAGATATTTTTCCACCTAATTATCCCAAACATTTTAATTCTGTACATGTTTCCTCTTTAATAATGCACTCTTTCATTTGATGTAACGCTCATATAAATATACTAGGATAAAGTTTGTCGAAATTTTGTCCCATCCTTCACTACATTGTT-GGTGTTAGGATACTGCTTATATTT-CTTTAAAATCAAATATATT] [+] EMBL CD077390 [CGAGGCTGAAGAACGTTGGACTGCTGTTGGTTATCCTGGTCACCTTTACGGTACTGTTAACGGGGGTTTAGGGCTTCTTGTTCAAGTTTCTCCAGTTTTATTTGCGTTTTTGAAAGAAGTCGAGTTTCGTTTATCAAATCTAGTTGTACCTGTTGGTGGATTTTCACATGATACATGGAGAGCTTTTAAAGCTGATCGCGAAATTAAGATGGCGCATAATTTCGTAGATGGTGATCTCATTGAAACAGTTACAGATTTAAGCATGGACGACAAGGCTAAATTAGTCAAAGGTTTACGAATACCGGTAAACATGAATGAATTCGGAACTGCTGGTTCAACGTGTACTACTGATCCTGAAACACGAGAGTGT ACTGTGGAAGATTTAGTCAAAGTTGTCGAAGAAATGTCACGTCTTCATTAGTAACCAATGTGTAGCACAGAAATCATACTGAATGTTTATATCGATCTATTTATATTGATG ] [+] EMBL SMAA28930 [ ACGAATACCGGTAAACATGAATGAATTCGGAACTGCTGGTTCAACGTGTACTACTGATCCTGAAACACGAGAGTGTAACTGTGGAAGATTTAGTCAAAGTTGTCGAAGAAATGTCACGTCTTCATTAGTAACCAATGTGTAGCAAAGAAATCATACTGAATATTTATATCGATCTATTTATATTGATGCAATTGTTACCATTCATTGTCTTTACTTTTGCCTTTGATGATGAGATCCGCTAGATATTTTTCCACCTAATTATCCCAAACATTTTAATTCTGTACATGTTTCCTCTTTAATAATGCACTCTTTCATTTGATGTAACGCTCATATAAATATACTAGGATAAAGTTTGTCGAAATTTTGTCCCATCCTTCACTACATTGTT GGTGTTAGGATACTGCTTATATTT CTTTAAAATCAAATATAT ] [+] EMBL SMAA28938 [ ACGAATACCGGTAAACATGAATGAATTCGGAACTGCTGGTTCAACGTGTACTACTGATCCTGAAACACGAGAGT T ACTGTGGAAGATTTAGTC AAGTTGTCGAAGAAATGTCACGTCTTCATTAGTAACCAATGTGTAGCAAAG AATCATACTGAATATTTATATCGATCTATTTATATTGATGCAATTGTTACCATTCATTGTCTTTACTTTTGCCTTTGATGATGAGATCCGCTAGATATTTTTCCACCTAATTATCCCAAACATTTTAATTCTGTACATG TTCCTCTTTAATAATGCACTCTTTCATTTGATGT ACGCTCATATAAATATACTAGGATTAAGTTTGTCG AATTTTGT CCATCCTTCACTACA TGTTGGGTGTTAGGATACTGCTTATATTTCCTTTAAAATC AATATAat] consensusID : consensus_6851#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 337 fasta sequence [GAAGCNGAGAGAGGCAGATTTAAGCATGGACGACAAGGCTAAATTAGTCAAAGGTTTACGAATACCGGTAAACATGAATGAATTCGGAACTGCTGGTCNAACGTGTACTACTGATCCTGAAACACGAGAGTGTACTGTGGAAGATTTAGTCAAAGTTGTCGAAGAAATGTCACGTCTTCATTAGTAACCAATGTGTAGCAAAGAAATCATACTGAATATTTATATCGATCTATTTATATTGATGCAATTGTTACCATTCATTGTCTTTACTTTTGCCTTTGATGATGAGATCCGCTAGATATTTTTCCACCTAATTATCCCAAACATTTTAATTCTG] [-] EMBL CD141213 [GAAGCNGAGAGAGGCAGATTTAAGCATGGACGACAAGGCTAAATTAGTCAAAGGTTTACGAATACCGGTAAACATGAATGAATTCGGAACTGCTGGTCNAACGTGTACTACTGATCCTGAAACACGAGAGTGTACTGTGGAAGATTTAGTCAAAGTTGTCGAAGAAATGTCACGTCTTCATTAGTAACCAATGTGTAGCAAAGAAATCATACTGAATATTTATATCGATCTATTTATATTGATGCAATTGTTACCATTCATTGTCTTTACTTTTGCCTTTGATGATGAGATCCGCTAGATATTTTTCCACCTAATTATCCCAAACATTTTAATTCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6851#0 CGAGGCTGAAGAACGTTGGACTGCTGTTGGTTATCCTGGTCACCTTTACGGTACTGTTAA 60 consensus_6851#1 ------------------------------------------------------------ consensus_6851#0 CGGGGGTTTAGGGCTTCTTGTTCAAGTTTCTCCAGTTTTATTTGCGTTTTTGAAAGAAGT 120 consensus_6851#1 ------------------------------------------------------------ consensus_6851#0 CGAGTTTCGTTTATCAAATCTAGTTGTACCTGTTGGTGGATTTTCACATGATACATGGAG 180 consensus_6851#1 ------------------------------------------------------------ consensus_6851#0 AGCTTTTAAAGCTGATCGCGAAATTAAGATGGCGCATAATTTCGTAGATGGTGATCTCAT 240 consensus_6851#1 ---------------------------------------------------------GAA 3 * consensus_6851#0 TGAAACAGTTACAGATTTAAGCATGGACGACAAGGCTAAATTAGTCAAAGGTTTACGAAT 300 consensus_6851#1 GCNGAGAGAGGCAGATTTAAGCATGGACGACAAGGCTAAATTAGTCAAAGGTTTACGAAT 63 * ** ************************************************* consensus_6851#0 ACCGGTAAACATGAATGAATTCGGAACTGCTGGTTCAACGTGTACTACTGATCCTGAAAC 360 consensus_6851#1 ACCGGTAAACATGAATGAATTCGGAACTGCTGGTCNAACGTGTACTACTGATCCTGAAAC 123 ********************************** ************************ consensus_6851#0 ACGAGAGTGTACTGTGGAAGATTTAGTCAAAGTTGTCGAAGAAATGTCACGTCTTCATTA 420 consensus_6851#1 ACGAGAGTGTACTGTGGAAGATTTAGTCAAAGTTGTCGAAGAAATGTCACGTCTTCATTA 183 ************************************************************ consensus_6851#0 GTAACCAATGTGTAGCAAAGAAATCATACTGAATATTTATATCGATCTATTTATATTGAT 480 consensus_6851#1 GTAACCAATGTGTAGCAAAGAAATCATACTGAATATTTATATCGATCTATTTATATTGAT 243 ************************************************************ consensus_6851#0 GCAATTGTTACCATTCATTGTCTTTACTTTTGCCTTTGATGATGAGATCCGCTAGATATT 540 consensus_6851#1 GCAATTGTTACCATTCATTGTCTTTACTTTTGCCTTTGATGATGAGATCCGCTAGATATT 303 ************************************************************ consensus_6851#0 TTTCCACCTAATTATCCCAAACATTTTAATTCTGTACATGTTTCCTCTTTAATAATGCAC 600 consensus_6851#1 TTTCCACCTAATTATCCCAAACATTTTAATTCTG-------------------------- 337 ********************************** consensus_6851#0 TCTTTCATTTGATGTAACGCTCATATAAATATACTAGGATAAAGTTTGTCGAAATTTTGT 660 consensus_6851#1 ------------------------------------------------------------ consensus_6851#0 CCCATCCTTCACTACATTGTTGGTGTTAGGATACTGCTTATATTTCTTTAAAATCAAATA 720 consensus_6851#1 ------------------------------------------------------------ consensus_6851#0 TATT 724 consensus_6851#1 ---- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||