cluster # 6864

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Schistosoma mansoni
cluster # 6864 cluster # 6864 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6864#0 length = 537 sequences # 1

consensus_6864#1 length = 377 sequences # 2
consensus_6864#2 length = 251 sequences # 1

consensusID : consensus_6864#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 537
fasta sequence

                              [CGCGGCAAGGAATTCGGCACGAGGGTAAGGTTCACTTCTTATTTCCTGAAGGTTTACAAATGGGTGAGGAATATGATTTATCTACTCATAACCTACTGACAAGGAAATTTAGAAGCAAAACCGTACTTGGTGGGGACGGACAATGGGAATACGAAGTTGGAGAACCACTGAGGAGGGAAAACCAGTTTTCAGAGCATCTAATGGAGTCACCACAAGCTCCACTGTTTATTCGTAGCGATGTTCCACGTGCATTCCAATGGCGTATCCGTAACTTACCTTACCCATTAGATGTGTACAGAGTTTCCGTTGAAGATGGGAATATTTTATTGCGGACCACCAACAAAAAATATTACAAAAAGTTCAACATTTCGGATATGACCCGGATGGGTTTACCTTTAAATGAAAAGTCATATCATTGACCATGCTAACATACTCTCTGATTTCGTACAAAAGCAGATGAATTCTAGAAACGAAAACTGTCGACATTCGTAAGTCACTAAGCAGTGAGCACAAGAAGCTGAAAATCCGACAAATTAG]

[+] EMBL CD077812             [CGCGGCAAGGAATTCGGCACGAGGGTAAGGTTCACTTCTTATTTCCTGAAGGTTTACAAATGGGTGAGGAATATGATTTATCTACTCATAACCTACTGACAAGGAAATTTAGAAGCAAAACCGTACTTGGTGGGGACGGACAATGGGAATACGAAGTTGGAGAACCACTGAGGAGGGAAAACCAGTTTTCAGAGCATCTAATGGAGTCACCACAAGCTCCACTGTTTATTCGTAGCGATGTTCCACGTGCATTCCAATGGCGTATCCGTAACTTACCTTACCCATTAGATGTGTACAGAGTTTCCGTTGAAGATGGGAATATTTTATTGCGGACCACCAACAAAAAATATTACAAAAAGTTCAACATTTCGGATATGACCCGGATGGGTTTACCTTTAAATGAAAAGTCATATCATTGACCATGCTAACATACTCTCTGATTTCGTACAAAAGCAGATGAATTCTAGAAACGAAAACTGTCGACATTCGTAAGTCACTAAGCAGTGAGCACAAGAAGCTGAAAATCCGACAAATTAG]




>consensus_6864#0
CGCGGCAAGGAATTCGGCACGAGGGTAAGGTTCACTTCTTATTTCCTGAAGGTTTACAAA
TGGGTGAGGAATATGATTTATCTACTCATAACCTACTGACAAGGAAATTTAGAAGCAAAA
CCGTACTTGGTGGGGACGGACAATGGGAATACGAAGTTGGAGAACCACTGAGGAGGGAAA
ACCAGTTTTCAGAGCATCTAATGGAGTCACCACAAGCTCCACTGTTTATTCGTAGCGATG
TTCCACGTGCATTCCAATGGCGTATCCGTAACTTACCTTACCCATTAGATGTGTACAGAG
TTTCCGTTGAAGATGGGAATATTTTATTGCGGACCACCAACAAAAAATATTACAAAAAGT
TCAACATTTCGGATATGACCCGGATGGGTTTACCTTTAAATGAAAAGTCATATCATTGAC
CATGCTAACATACTCTCTGATTTCGTACAAAAGCAGATGAATTCTAGAAACGAAAACTGT
CGACATTCGTAAGTCACTAAGCAGTGAGCACAAGAAGCTGAAAATCCGACAAATTAG

consensusID : consensus_6864#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 377
fasta sequence

                              [ATGGATACCAGCGCATGGATCAAAAAGGTTAAATCTGCGAAAGCGACTGTCATCACTGAGGATGGAAAGCGTAAGGTTCACTTCTTATTTCCTGAAGGTTTACAAATGGTTGAGGAATATGATTTATCTACTCATAACCTACTGACAAGGAAATTTAGAAGCAAAACCGTACTTGGTGGGGACGGACAATGGGAATACGAAGTTGGAGAACCACTGAGGAGGGAAAACCAGTTTTCAGAGCATCTAATGGAGTCTCCACAAGCTCCACTGTTTATTCGTAACGATGTTCCACGTGCATTTCAATGGCGTATCCGTGACTTACCTTACCCATTAGATGTGTACAGAGTTTCCGTTGAAGATGGGAATATTTTATTGCG]

[-] EMBL CD145667             [ATGGATACCAGCGCATGGATCAAAAAGGTTAAATCTGCGAAAGCGACTGTCATCACTGAGGATGGAAAGCGTAAGGTTCACTTCTTATTTCCTGAAGGTTTACAAATGGTTGAGGAATATGATTTATCTACTCATAACCTACTGACAAGGAAATTTAGAAGCAAAACCGTACTTGGTGGGGACGGACAATGGGAATACGAAGTTGGAGAACCACTGAGGAGGGAAAACCAGTTTTCAGAGCATCTAATGGAGTCTCCACAAGCTCCACTGTTTATTCGTAACGATGTTCCACGTGCATTTCAATGGCGTATCCGTGACTTACCTTACCCATTAGATGTGTACAGAGTTTCCGTTGAAGATGGGAATATTTTATTGCG]
[+] EMBL CD120961             [                          GGTTAAATCTGCGAAAGCGACTGTCATTACTGAGGATGGAAAGCGTAAGGTTCACTTCTTATTTCCTGAAGGTTTACAAATGGTTGAGGAATATGATTTATCTACTCATAACCTACTGACAAGGAAATTTAGAAGCAAAACCGTACTTGGTGGGGACGGACAATGGGAATACGAAGTTGGAGAACCACTGAGGAGGGAAAACCAGTTTTCAGAGCATCTAAT                                                                                                                                 ]




>consensus_6864#1
ATGGATACCAGCGCATGGATCAAAAAGGTTAAATCTGCGAAAGCGACTGTCATCACTGAG
GATGGAAAGCGTAAGGTTCACTTCTTATTTCCTGAAGGTTTACAAATGGTTGAGGAATAT
GATTTATCTACTCATAACCTACTGACAAGGAAATTTAGAAGCAAAACCGTACTTGGTGGG
GACGGACAATGGGAATACGAAGTTGGAGAACCACTGAGGAGGGAAAACCAGTTTTCAGAG
CATCTAATGGAGTCTCCACAAGCTCCACTGTTTATTCGTAACGATGTTCCACGTGCATTT
CAATGGCGTATCCGTGACTTACCTTACCCATTAGATGTGTACAGAGTTTCCGTTGAAGAT
GGGAATATTTTATTGCG

consensusID : consensus_6864#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 251
fasta sequence

                              [TTACAAATGGTTGAGGAATATGATTTATCTACTCATAACCTACTGAGTAGTATGCTTTTTTCAAATCACCTTATGATCATAATGAGCAAGGAAATTTAGAAGCAAAACCGTACTTGGTGGGGACGGACAATGGGAATACGAAGTTGGAGAACCACTGAGGAGGGAAAACCAGTTTTCAGAGCATCTAATGGAGTCACCACAAGCTGTATTTTAATATTTTCATTACCTCAGTAACAAAATTAGCCACTGTT]

[+] EMBL CD192654             [TTACAAATGGTTGAGGAATATGATTTATCTACTCATAACCTACTGAGTAGTATGCTTTTTTCAAATCACCTTATGATCATAATGAGCAAGGAAATTTAGAAGCAAAACCGTACTTGGTGGGGACGGACAATGGGAATACGAAGTTGGAGAACCACTGAGGAGGGAAAACCAGTTTTCAGAGCATCTAATGGAGTCACCACAAGCTGTATTTTAATATTTTCATTACCTCAGTAACAAAATTAGCCACTGTT]




>consensus_6864#2
TTACAAATGGTTGAGGAATATGATTTATCTACTCATAACCTACTGAGTAGTATGCTTTTT
TCAAATCACCTTATGATCATAATGAGCAAGGAAATTTAGAAGCAAAACCGTACTTGGTGG
GGACGGACAATGGGAATACGAAGTTGGAGAACCACTGAGGAGGGAAAACCAGTTTTCAGA
GCATCTAATGGAGTCACCACAAGCTGTATTTTAATATTTTCATTACCTCAGTAACAAAAT
TAGCCACTGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6864#0      -----------------------------------------CGCGGCAAGGA--ATTCGG 17
consensus_6864#1      ATGGATACCAGCGCATGGATCAAAAAGGTTAAATCTGCGAAAGCGACTGTCATCACTGAG 60
consensus_6864#2      -------------------------------------------------------TTACA 5
                                                                              *   

consensus_6864#0      CACG---AGGGTAAGGTTCACTTCTTATTTCCTGAAGGTTTACAAATGGGTGAGGAATAT 74
consensus_6864#1      GATGGAAAGCGTAAGGTTCACTTCTTATTTCCTGAAGGTTTACAAATGGTTGAGGAATAT 120
consensus_6864#2      AATG-----GTTGAGGAATATGATTTATCTACTCATAACCTACTGAGTAGT-ATGCTTTT 59
                       * *       * ***   *    **** * ** *     ***  *    * * *  * *

consensus_6864#0      GATTTATCTACTCATAACC-TACTGA-CAAGGAAATTTAGAAGCAAAACCGTACTTGGTG 132
consensus_6864#1      GATTTATCTACTCATAACC-TACTGA-CAAGGAAATTTAGAAGCAAAACCGTACTTGGTG 178
consensus_6864#2      TTCAAATCACCTTATGATCATAATGAGCAAGGAAATTTAGAAGCAAAACCGTACTTGGTG 119
                           ***  ** ** * * ** *** *********************************

consensus_6864#0      GGGACGGACAATGGGAATACGAAGTTGGAGAACCACTGAGGAGGGAAAACCAGTTTTCAG 192
consensus_6864#1      GGGACGGACAATGGGAATACGAAGTTGGAGAACCACTGAGGAGGGAAAACCAGTTTTCAG 238
consensus_6864#2      GGGACGGACAATGGGAATACGAAGTTGGAGAACCACTGAGGAGGGAAAACCAGTTTTCAG 179
                      ************************************************************

consensus_6864#0      AGCATCTAATGGAGTCACCACAAGCTCCACTGTTTATTCGTAGCGATGTTCCACGTGCAT 252
consensus_6864#1      AGCATCTAATGGAGTCTCCACAAGCTCCACTGTTTATTCGTAACGATGTTCCACGTGCAT 298
consensus_6864#2      AGCATCTAATGGAGTCACCACAAGCTGTATT--TTAATATTTTCATTACCTCA---GTAA 234
                      **************** *********  * *  *** *  *  *  *    **   * * 

consensus_6864#0      TCCAATGGCGTATCCGTAACTTACCTTACCCATTAGATGTGTACAGAGTTTCCGTTGAAG 312
consensus_6864#1      TTCAATGGCGTATCCGTGACTTACCTTACCCATTAGATGTGTACAGAGTTTCCGTTGAAG 358
consensus_6864#2      CAAAAT----TAGCCACTGTT--------------------------------------- 251
                         ***    ** **     *                                       

consensus_6864#0      ATGGGAATATTTTATTGCGGACCACCAACAAAAAATATTACAAAAAGTTCAACATTTCGG 372
consensus_6864#1      ATGGGAATATTTTATTGCG----------------------------------------- 377
consensus_6864#2      ------------------------------------------------------------
                                                                                  

consensus_6864#0      ATATGACCCGGATGGGTTTACCTTTAAATGAAAAGTCATATCATTGACCATGCTAACATA 432
consensus_6864#1      ------------------------------------------------------------
consensus_6864#2      ------------------------------------------------------------
                                                                                  

consensus_6864#0      CTCTCTGATTTCGTACAAAAGCAGATGAATTCTAGAAACGAAAACTGTCGACATTCGTAA 492
consensus_6864#1      ------------------------------------------------------------
consensus_6864#2      ------------------------------------------------------------
                                                                                  

consensus_6864#0      GTCACTAAGCAGTGAGCACAAGAAGCTGAAAATCCGACAAATTAG 537
consensus_6864#1      ---------------------------------------------
consensus_6864#2      ---------------------------------------------