These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7361#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 942 fasta sequence [CAGGTAAAGTTTATCTATTAAAAACGTACTTACCTAAAATCCCTCAAGCTGTTAATTGAAATCACTCGAATAAATCGAGTTCTTACTCGAAAATTTGGTACTAATAGTGATGTAAATTTGTTAAGAGATATGAAGTTTGTTCATGAATAATGATTAGTCAGTATTCTTTTATAGTGCAATAAATAACAGTTGGGTCAAGACACGGTGAAAGTTCATGAATCTTTTAAGATTGTGGTACATCTATCGGAAGGGATGATAAAAAACTCAACAGGAACCAGTTGATTTTCATGATGTATGTAAACGTTCTCTATTGAAGAACTATTTTACACAGAACAAATAGGATAGTTAATGTTGATTTAAAATTAAAATCAAATTTTAAAACAGTATGAACAAAAGTATATGAATACTACCTTATAAACCTATTCGAACATCTAATGAATTCATGCTAGAAACAATATCTAACAATGAAAATAGGAAAATATACAATGGAATATATCCTAGGTAAAATATCATAAGTATTCCTATTATTTATGATAATTTGTTTCTGGTAGAGCTAATCCAACCATTTTGGCAGCTTCTTCAGTTGTTTTCTCTTTGGTTTTATACAATTCCACGAGTTCTGAATGTTTTCGTAAACTTTGCAAATAATTTAAATATGTTTCAGCTAGATGAACACTTTCATTTTGTCTAGCACATTTTTGAGCATCGGTTAAATGATTATTTCTAAATTCAGAAATAACGTATTGCACTACTGGTGAATAGTCAAAAGGTGCTCTTTGATTCTTTCGAACGTGTCGAAGTTCACGGAGAATATTTCGGAATAGCTGAATCCTCGATGACATTGTCGATTATTTGATGATGAATTTATTAAAAAATATCCGCAAACTCAGGAGCAAGTAACTCCCAATTCAAATAGTCCTCGTGCCGAATNTTGGCTGCGAG] [+] EMBL CD074374 [CAGGTAAAGTTTATCTATTAAAAACGTACTTACCTAAAATCCCTCAAGCTGTTAATTGAAATCACTCGAATAAATCGAGTTCTTACTCGAAAATTTGGTACTAATAGTGATGTAAATTTGTTAAGAGATATGAAGTTTGTTCATGAATAATGATTAGTCAGTATTCTTTTATAGTGCAATAAATAACAGTTGGGTCAAGACACGGTGAAAGTTCATGAATCTTTTAAGATTGTGGTACATCTATCGGAAGGGATGATAAAAAACTCAACAGGAACCAGTTGATTTTCATGATGTATGTAAACGTTCTCTATTGAAGAACTATTTTACACAGAACAAATAGGATAGTTAATGTTGATTTAAAATTAAAATCAAATTTTAAAACAGTATGAACAAAAGTATATGAATACTACCTTATAAACCTATTCGAACATCTAATGAATTCATGCTAGAAACAATATCTAACAATGAAAATAGGAAAATATACAATGGAATATATCCTAGGTAAAATATCATAAGTATTCCTATTATTTATGATAATTTGTTTCTGGTAGAGCTAATCCAACCATTTTGGCAGCTTCTTCAGTTGTTTTCTCTTTGGTTTTATACAATTCCACGAGTTCTGAATGTTTTCGTAAACTTTGCAAATAATTTAAATATGTTTCAGCTAGATGAACA ] [+] EMBL CD074364 [CAGGTAAAGTTTATCTATTAAAAACGTACTTACCCAAAATCCCTCAAGCTGTTAATTGAAATCACTCGAATAAATCGAGTTCTTACTCGAAAATTTGGTACTAATAGTGATGTAAATTTGTTAAGAGATATGAAGTTTGTTCATGAATAATGATTAGTCAGTATTCTTTTATAGTGCAATAAATAACAGTTGGGTCAAGACACGGTGAAAGTTCATGAATCTTTTAAGATTGTGGTACATCTATCGGAAGGGATGATAAAAAACTCAACAGGAACCAGTTGATTTTCATGATGTATGTAAACGTTCTCTATTGAAGAACTATTTTACACAGAACAAATAGGATAGTTAATGTTGATTTAAAATTAAAATCAAATTTTAAAACAGTATGAACAAAAGTATATGAATACTACCTTATAAACCTATTCGAACATCTAATGAATTCATGCTAGAAACAATATCTAACAATGAAAATAGGAAAATATACAATGGAATATATCCTAGGTAAAATATCATAAGTATTCCTATTATTTATGATAATTTGTTTCTGGTAGAGCTAATCCAACCATTTTGGCAGCTTCTTCAGTTGTTTTCTCTTTGGTTNTATACAATTCCACGAGTTCTGAATGTTTTCGTAAACTTTGCAAATAA ] [-] EMBL CD080452 [ AGTTGATNNTCATGATGTATGTAAACGTTCTCTA TGAAGAACTATTTTACACAGAACAAATAGGATAGTTAATGTTGATTTANAATTAAAATCAAATTTTAAAACAGTATGAACAAAAGTATATGAATACTACCTTATAAACCTATTCGAACATCTAATGAATTCATGCTAGAAACAATATCTAACAATGAAAATAGGAAAATATACAATGGAATATATCCTAGGTAAAATATCATAAGTATTCCTATTATTTATGATAATTTGTTTCTGGTAGAGCTAATCCAACCATTTTGGCAGCTTCTTCAGTTGTTTTCTCTTTGGTTTTATACAATTCCACGAGTTCTGAATGTTTTCGTAAACTTTGCAAATAATTTAAATATGTTTCAGCTAGATGAACACTTTCATTTTGTCTAGCACATTTTTGAGCATCGGTTAAATGATTATTTCTAAATTCAGAAATAACGTATTGCACTACTGGTGAATAGTCAAAAGGTGCTCTTTGATTCTTTCGAACGTGTCGAAGTTCACGGAGAATATTTCGGAATAGCTGAATCCTCGATGACATTGTCGATTATTTGATGATGAATTTATTAAAAAATATCCGCAAACTCAGGAGCAAGTAACTCCCAATTCAAATAGT ] [-] EMBL CD080463 [ CAAATAGGATAGTTAATGTTGATTTAAAATTAAAATCAAATTTTAAAACAGTATGAACAAAAGTATATGAATACTACCTTATAAACCTATTCGAACATCTAATGAATTCATGCTAGAAACAATATCTAACAATGAAAATAGGAAAATATACAATGGAATATATCCTAGGTAAAATATCATAAGTATTCCTATTATTTATGATAATTTGTTTCTGGTAGAGCTAATCCAACCATTTTGGCAGCTTCTTCAGTTGTTTTCTCTTTGGTTTTATACAATTCCACGAGTTCTGAATGTTTTCGTAAACTTTGCAAATAATTTAAATATGTTTCAGCTAGATGAACACTTTCATTTTGTCTAGCACATTTTTGAGCATCGGTTAAATGATTATTTCTAAATTCAGAAATAACGTATTGCACTACTGGTGAATAGTCAAAAGGTGCTCTTTGATTCTTTCGAACGTGTCGAAGTTCACGGAGAATATTTCGGAATAGCTGAATCCTCGATGACATTGTCGATTATTTGATGATGAATTTATTAAAAAATATCCGCAAACTCAGGAGCAAGTAACTCCCAATTCAAATAGTCCTCGTGCCGAATNTTGGCTGCGAG] consensusID : consensus_7361#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 317 fasta sequence [TGCACTACTGGTGAATAGTCAAAAGGTAACTGCTCTTTGATTCTTTCGAACGTGTCGAAGTTCACGGAGAATATTTCGGAATAGCTGAATCCTCGATGACATTGTCGATTATTTGATGATGAATTTATCTATAGTTAGTGGTAGGATAAGTACTTCATGATGAAAAGATATAAAGAAATATTTTGAGGCAAAAAAATTGTACATTTAAGTTGATAATTTTAGAGATTTGACTAGTAAGTGTAAAGCCGTTTCATTACGAAACAACATTATTTTTTAGGACCAAAAAACATCAGATTCCCTCGTGCCGAATCTTGGCC] [-] EMBL CD077915 [TGCACTACTGGTGAATAGTCAAAAGGTAACTGCTCTTTGATTCTTTCGAACGTGTCGAAGTTCACGGAGAATATTTCGGAATAGCTGAATCCTCGATGACATTGTCGATTATTTGATGATGAATTTATCTATAGTTAGTGGTAGGATAAGTACTTCATGATGAAAAGATATAAAGAAATATTTTGAGGCAAAAAAATTGTACATTTAAGTTGATAATTTTAGAGATTTGACTAGTAAGTGTAAAGCCGTTTCATTACGAAACAACATTATTTTTTAGGACCAAAAAACATCAGATTCCCTCGTGCCGAATCTTGGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7361#0 CAGGTAAAGTTTATCTATTAAAAACGTACTTACCTAAAATCCCTCAAGCTGTTAATTGAA 60 consensus_7361#1 ------------------------------------------------------------ consensus_7361#0 ATCACTCGAATAAATCGAGTTCTTACTCGAAAATTTGGTACTAATAGTGATGTAAATTTG 120 consensus_7361#1 ------------------------------------------------------------ consensus_7361#0 TTAAGAGATATGAAGTTTGTTCATGAATAATGATTAGTCAGTATTCTTTTATAGTGCAAT 180 consensus_7361#1 ------------------------------------------------------------ consensus_7361#0 AAATAACAGTTGGGTCAAGACACGGTGAAAGTTCATGAATCTTTTAAGATTGTGGTACAT 240 consensus_7361#1 ------------------------------------------------------------ consensus_7361#0 CTATCGGAAGGGATGATAAAAAACTCAACAGGAACCAGTTGATTTTCATGATGTATGTAA 300 consensus_7361#1 ------------------------------------------------------------ consensus_7361#0 ACGTTCTCTATTGAAGAACTATTTTACACAGAACAAATAGGATAGTTAATGTTGATTTAA 360 consensus_7361#1 ------------------------------------------------------------ consensus_7361#0 AATTAAAATCAAATTTTAAAACAGTATGAACAAAAGTATATGAATACTACCTTATAAACC 420 consensus_7361#1 ------------------------------------------------------------ consensus_7361#0 TATTCGAACATCTAATGAATTCATGCTAGAAACAATATCTAACAATGAAAATAGGAAAAT 480 consensus_7361#1 ------------------------------------------------------------ consensus_7361#0 ATACAATGGAATATATCCTAGGTAAAATATCATAAGTATTCCTATTATTTATGATAATTT 540 consensus_7361#1 ------------------------------------------------------------ consensus_7361#0 GTTTCTGGTAGAGCTAATCCAACCATTTTGGCAGCTTCTTCAGTTGTTTTCTCTTTGGTT 600 consensus_7361#1 --------------------------------------------TGCACTACTGGTGAAT 16 ** * ** * consensus_7361#0 TTATACAATTCCACGAGTTCTGAATGTTTTCGTAAACTTTGCAAATAATTTAAATATGTT 660 consensus_7361#1 AGTCAAAAGGTAACTGCTCTTTGATTCTTTCGAACGTGTCGAAGTTCACGGAGA-ATATT 75 * ** ** * * ** ***** * * * * * * * * ** ** consensus_7361#0 TCAGCTAGATGAACACTTTCATTTTGTCTAGCACATTTTTGAGCATCGGTTAAATGATTA 720 consensus_7361#1 TCGG-------AATAGCTGAATCCT--CGATGACATTGTCGATTATTTGATGA-TGAATT 125 ** * ** * * ** * * * ***** * ** ** * * * *** * consensus_7361#0 TTTCTAAATTCAGAAATAACGTATTGCACTAC-TGGTGAATAGTCAAAAGGTGCTCTTTG 779 consensus_7361#1 TATCTATAGTTAGTGGTAGGATAA-GTACTTCATGATGAAAAGATATAAAGAAATATTTT 184 * **** * * ** ** ** * *** * ** **** ** * ** * * *** consensus_7361#0 ATTCTTTCGAACGTGTCGAAGTTCACGGAGAATATTTCGGAATAGCTGAATCCTCGATGA 839 consensus_7361#1 GAGGCAAAAAAATTGT--ACATTTAAGTTGATAATTTTAGAG-ATTTGACTAGTAAGTGT 241 ** *** * ** * * ** **** ** * *** * * ** consensus_7361#0 CATTGTCGATTATTTGATGATGAATTTATTAAAAAATATCCGCAAACTCAGGAGCAAGTA 899 consensus_7361#1 AA-----AGCCGTTTCATTACGAAAC-----AACATTATTT-----TTTAGGACCAAAAA 286 * *** ** * *** ** * *** * **** *** * consensus_7361#0 ACTCCCAATTCAAATAGTCCTCGTGCCGAATNTTGGCTGCGAG 942 consensus_7361#1 ACATCAGATTC-------CCTCGTGCCGAATCTTGGCC----- 317 ** * **** ************* ***** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||