These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7381#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 977 fasta sequence [TGCCTTCGAGTTCCAGTTCTCACTGTAACAAATTGAAGAGCTCACGCAATATTTTCCTGGTTACAGGCTAGCCACAGTGTTCCAAGAGACCAAACCTTTCTAGTAGGTTTCAGGGAAAATATATGGGGCTTGTGCGTTACCTTAAAAGCGAAGTATATCCAAGTGCTCACTTGTATAACATGCTTTTATGTTACGTTGCCTAACTCTTTAGAACAAGAAATATTTTTTCTTTTCATTAGTCAAGTTATCAGTTTCATATAGATCTAGTTTGATGACGAAGCCACTTTAGACGCATCATGAAGCCATTTAAGTGGTTTTCAGATATGTTACGCAAATACCTGTATCTTGCTCAACGGCCTACCGGATCTAAGTTTACAGACAGACTCTTCCAAGCCGGACATAATCGCTGTCACAGAAACTTGGCTGACTCAGTCTGTAGATGCCGACAGAATCCAGAAGCCCAAACGAGGAGGAGTAGATCTATTCATTAGGAATACTATCCCGTTTACCGTTATTGATAACATCCCATAAAAATGGGACGTGGGAATTAGTTGCCTCTTGAAATACAAATGATGAGAGCTGCTGATTGGTTTGGTCTACCACAGTTCGAACTNTAAGGTTTCTTCTCAGGATGAACTCATTACGAAANCGTT-ATGGGATATGCAGTTCATTTGGATCTATTGGGATTTTTTCTCCAGCTGCAGCAAGAAACGTGATGGGGCTTTTTAACGTTCAATCTCGACTCTATAAAATGCACGACCATTTAGTTCGGAGATGCCCAGATTGTTATTTTGATCGACGTGAAGGCAGGCTTTATGTTGAATGCAAAACTCATCCACGTCATAAACAAGCTCAAAAAATGAGACCACCGAAAGCTCCATGGTTATTTAAACGTCCAATATGGAGGACTGTGTGTTGGTAAAGTAGAAACCTACTATGTACTATGGGCTGTAAACATTTATTAAAATGACAAAAAA] [+] EMBL CD080262 [TGCCTTCGAGTTCCAGTTCTCACTGTAACAAATTGAAGAGCTCACGCAATATTTTCCTGGTTACAGGCTAGCCACAGTGTTCCAAGAGACCAAACCTTTCTAGTAGGTTTCAGGGAAAATATATGGGGCTTGTGCGTTACCTTAAAAGCGAAGTATATCCAAGTGCTCACTTGTATAACATGCTTTTATGTTACGTTGCCTAACTCTTTAGAACAAGAAATATTTTTTCTTTTCATTAGTCAAGTTATCAGTTTCATATAGATCTAGTTTGATGACGAAGCCACTTTAGACGCATCATGAAGCCATTTAAGTGGTTTTCAGATATGTTACGCAAATACCTGTATCTTGCTCAACGGCCTACCGGATCTAAGTTTACAGACAGACTCTTCCAAGCCGGACATAATCGCTGTCACAGAAACTTGGCTGACTCAGTCTGTAGATGCCGACAGAATCCAGAAGCCCAAACGAGGAGGAGTAGATCTATTCATTAGGAATACTATCCCGTTTACCGTTATTGATAACATCCCATAAAAATGGGACGTGGGAATTAGTTGCCTCTTGAAATACAAATGATGAGAGCTGCTGATTGGTTTGGTCTACCACAGTTCGAACTNTAAGGTTTCTTCTCAGGATGAACTCATTACGAAANCGTT ATGGGATA ] [-] EMBL CD130039 [ AGAGACCAAACCTTTCTAGTAGGTTTCAGGGAGAATATATGGGGCTTGTGCGTTACCTTAAAAGCGAAGTATATCCAAGTGCTCACTTGTATAACATGCTTTTATGTTACGTTGCCTAACTCTTTAGAACAAGAAATATTTTTTCTTTTCATTAGTCAAGTTATCAGTTTCATATAGATCTAGTTTGATGACGAAGCCACTTTAGACGCATCATGAAGCCATTTAAGTGGTTTTCAGATATGTTACGCAAATACCTGTATCTTGCTCAACGGCCTACCGGATCTAAGTTTACAGACAGACTCTTCCAAACCGGACATAATCGCTGTC ] [-] EMBL CD074180 [ CCGGATCTAAGTTTACAGACAGACTCTTCCAAGCCGGACATAATCGCTGTCACAGAAACTTGGCTGACTCAGTCTGTAGATGCCGACAGAATCCAGAAGCCCAAACGAGGAGGAGTAGATCTATTCATTAGGAATACTATCCCGTTTACCGTTATTGATAACATCCCATAAAAATGGGACGTGGGAATTAGTTGCCTCTTGAAATACAAATGATGAGAGCTGCTGATTGGTTTGGTCTACCACAGTTCGAACTTTAAGGTTTCTTCTCAGGATGAACTCATTACGAAA CGTTAATGGGATATGCAGTTCATTTGGATCTATTGGGATTTTTTCTCCAGCTGCAGCAAGAAACGTGATGGGGCTTTTTAACGTTCAATCTCGACTCTATAAAATGCACGACCATTTAGTTCGGAGATGCCCAGATTGTTATTTTGATCGACGTGAAGGCAGGCTTTATGTTGAATGCAAAACTCATCCACGTCATAAACAAGCTCAAAAAATGAGACCACCGAAAGCTCCATGGTTATTTAAACGTCCAATATGGAGGACTGTGTGTTGGTAAAGTAGAAACCTACTATGTACTATGGGCTGTAAACATTTATTAAAATGACAAAAAA] consensusID : consensus_7381#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 282 fasta sequence [CGAGGCGATTGACCTTCTTATTCTTGCTAGCGAAAACTGAAAAAAGGTCTGGAATCGAAAAAGAGTAACAAAAATCGAGCTCTAAGAAATCTATCGGCAATTACAAACTTGTTGCAAGGATATTGGATATTGTTTTTAACCCGGGTAATAACTTTGCAACGTTACTTTGCAATTGGCTACCAGGGCACTTGTTCCTTTTTCTTTACAGGTAGGGATATGTTTTTACTGAAAGTCTCAGAAACTACTGGAAGGTCCATTTAATATTCCAAATGCCTTCGAGTG] [+] EMBL CD083675 [CGAGGCGATTGACCTTCTTATTCTTGCTAGCGAAAACTGAAAAAAGGTCTGGAATCGAAAAAGAGTAACAAAAATCGAGCTCTAAGAAATCTATCGGCAATTACAAACTTGTTGCAAGGATATTGGATATTGTTTTTAACCCGGGTAATAACTTTGCAACGTTACTTTGCAATTGGCTACCAGGGCACTTGTTCCTTTTTCTTTACAGGTAGGGATATGTTTTTACTGAAAGTCTCAGAAACTACTGGAAGGTCCATTTAATATTCCAAATGCCTTCGAGTG] consensusID : consensus_7381#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 204 fasta sequence [GCACTTGTTCCTTTTTCTTTACAGGTTTCTTCTCAGGATGAACTCATTACGAAACGTTAATGGGATATGCAGTTCATTTGGATCTATTGGGATTTTTTCTCCAGCTGCAGCAAGAAACGTGATGGGGCTTTTTAACGTTCAATCTCGACTCTATAAAATGCACGACCATTTAGTTCGGAGATGCCCAGATTGTTATTTTGATCG] [-] EMBL CD188996 [GCACTTGTTCCTTTTTCTTTACAGGTTTCTTCTCAGGATGAACTCATTACGAAACGTTAATGGGATATGCAGTTCATTTGGATCTATTGGGATTTTTTCTCCAGCTGCAGCAAGAAACGTGATGGGGCTTTTTAACGTTCAATCTCGACTCTATAAAATGCACGACCATTTAGTTCGGAGATGCCCAGATTGTTATTTTGATCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7381#0 TGCCTTCGAGTTCCAGTTCTCACTGTAACAAATTGAAGAGCTCACGCAATATTTTCCTGG 60 consensus_7381#2 ------------------------------------------------------------ consensus_7381#1 ------------------------------------------------------------ consensus_7381#0 TTACAGGCTAGCCACAGTGTTCCAAGAGACCAAACCTTTCTAGTAGGTTTCAGGGAAAAT 120 consensus_7381#2 ------------------------------------------------------------ consensus_7381#1 ------------------------------------------------------------ consensus_7381#0 ATATGGGGCTTGTGCGTTACCTTAAAAGCGAAGTATATCCAAGTGCTCACTTGTATAACA 180 consensus_7381#2 ------------------------------------------------------------ consensus_7381#1 ------------------------------------------------------------ consensus_7381#0 TGCTTTTATGTTACGTTGCCTAACTCTTTAGAACAAGAAATATTTTTTCTTTTCATTAGT 240 consensus_7381#2 ------------------------------------------------------------ consensus_7381#1 ------------------------------------------------------------ consensus_7381#0 CAAGTTATCAGTTTCATATAGATCTAGTTTGATGACGAAGCCACTTTAGACGCATCATGA 300 consensus_7381#2 ------------------------------------------------------------ consensus_7381#1 ------------------------------------------------------------ consensus_7381#0 AGCCATTTAAGTGGTTTTCAGATATGTTACGCAAATACCTGTATCTTGCTCAACGGCCTA 360 consensus_7381#2 ------------------------------------------------------------ consensus_7381#1 ------------------------------------------------------------ consensus_7381#0 CCGGATCTAAGTTTACAGACAGACTCTTCCAAGCCGGACATAATCGCTGTCACAGAAACT 420 consensus_7381#2 ------------------------------------------------------------ consensus_7381#1 ------------------------------------------------------------ consensus_7381#0 TGGCTGACTCAGTCTGTAGATGCCGACAGAATCCAGAAGCCCAAACGAGGAGGAGTAGAT 480 consensus_7381#2 ------------------------------------------------------------ consensus_7381#1 ------------------------------------------------------------ consensus_7381#0 CTATTCATTAGGAATACTATCCCGTTTACCGTTATTGATAACATCCCATAAAAATGGGAC 540 consensus_7381#2 ------------------------------------------------------------ consensus_7381#1 ------------------------------------------------------------ consensus_7381#0 GTGGGAATTAGTTGCCTCTTGAAATACAAATGATGAGAGCTGCTGATTGGTTTGGTCTAC 600 consensus_7381#2 -------------------------------------------------------GCACT 5 consensus_7381#1 ---------------------------------------------------CGAGGCGAT 9 * consensus_7381#0 CACAGTTCGAACT-NTA-AGGTTTCTTCTCAGGATGAACTC---ATTACGAAANCGTTAT 655 consensus_7381#2 TGTTCCTTTTTCT-TTACAGGTTTCTTCTCAGGATGAACTC---ATTACGAAACGTTAAT 61 consensus_7381#1 TGACCTTCTTATTCTTGCTAGCGAAAACTGAAAAAAGGTCTGGAATCGAAAAAGAGTAAC 69 * * * * ** * * ** *** * * consensus_7381#0 GGGATATGCAGTTCATTTGGATCTATTGGGATTTTTTCTCCAGCTGCAGCAAGAAACGTG 715 consensus_7381#2 GGGATATGCAGTTCATTTGGATCTATTGGGATTTTTTCTCCAGCTGCAGCAAGAAACGTG 121 consensus_7381#1 AAAA-ATCGAGCTCTAAGAAATCTATCGGCAATTACAAACTTGTTGCA--AGGATATTGG 126 * ** ** ** ****** ** * ** * * **** * ** * * consensus_7381#0 ATGGGGCTTTTTAACGTTCAATCTCGACTCTATAAAAT-GCACGACCATTTAGTTCGGAG 774 consensus_7381#2 ATGGGGCTTTTTAACGTTCAATCTCGACTCTATAAAAT-GCACGACCATTTAGTTCGGAG 180 consensus_7381#1 ATATTG-TTTTTAAC-CCGGGTAATAACTTTGCAACGTTACTTTGCAATTGGCTACCAGG 184 ** * ******** * *** * ** * * * *** * * * consensus_7381#0 ATGCCCAGATTGTTATTTTGATCGACGTGAAGGCAGGCTTTATGTTGAATGCAAAACTCA 834 consensus_7381#2 ATGCCCAGATTGTTATTTTGATCG------------------------------------ 204 consensus_7381#1 GCACTTGTTCCTTTTTCTTTACAGGTAGGGATATGTTTTTACTGAAAGTCTCAGAAACTA 244 * ** * ** * * consensus_7381#0 TCCACGTCATAAACAAGCTCAAAAAATGAGACCACCGAAAGCTCCATGGTTATTTAAACG 894 consensus_7381#2 ------------------------------------------------------------ consensus_7381#1 CTGGAAGGTCCATTTAATATTCCAAATGCCTTCGAGTG---------------------- 282 consensus_7381#0 TCCAATATGGAGGACTGTGTGTTGGTAAAGTAGAAACCTACTATGTACTATGGGCTGTAA 954 consensus_7381#2 ------------------------------------------------------------ consensus_7381#1 ------------------------------------------------------------ consensus_7381#0 ACATTTATTAAAATGACAAAAAA 977 consensus_7381#2 ----------------------- consensus_7381#1 ----------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||