These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7404#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 297 fasta sequence [CTGTC-TCGTTGTCTTTATGATCATATTATAAATAGTATATGATAGCTACGAAGAAAATATTTCATTCGC-CCAGTATTCTCGGGATGTGGATGAGGTTTAATGA-TTCTTGAAATAACCGAAACGTTGACAAATCGAAAACTGTTATTATTGATGAACGGTTTGTGAAAAATGTAGGATA-TTTTTTACAAGTAACTACTGAAGTTTGCTACACACGTCGAAATAGAAA-TATTTATTCGTCCATGTGGCTATAGAATTCCATATTGTAGAACCCTTTGAAAGATGCAAAGCGTTTGTTGA] [+] EMBL CD087825 [CTGTC TCGTTGTCTTTATGATCATATTATAAATAGTATATGATAGCTACGAAGAAAATATTTCATTCGC CCAGTATTCTCGGGATGTGGATGAGGTTTAATGACTTCTTGAAATAACCGAAACGTTGACAAATCGAAAACTGTTATTATTGATGAACGGTTTGTGAAAAATGTAGGATACTTTTTTACAAGTAACTACTGAAGTTTGCTACACACGTCGAAATAGAAACTATTTATTCGTCCATGTGGCTATAGAATTCCCTATTGTAGAACCCTTTGAAAGATGCAAAGCGTTTGTTG ] [+] EMBL CD087835 [CTGTCATCGTTGT TTTATGATCATATTATAAATAGTATATGATAGCTACGAAGAAAATATTTCATTCGC CCAGTATTCTCGGGATGTGGATGAGGTTTAATGA TTCTTGAAATAACCGAAACGTTGACAAATCGAAAACTGTTATTATTGATGAACGGTTTGTGAAAAATGTAGGATA TTTTTTACAAGTAACTACTGAAGTTTGCTACACACGTCGAAATAGAAA TATTTATTCGTCCATGTGGCTATAGAATTCCATATTGTAGAACCCTTTGAAAGATGCAAAGCGTTTGTTG ] [+] EMBL CD087886 [ TGTC AC TTGTC TTATTATCATATTAT AATAGTATATGATAGCTACGAAGAAGATATTTCATTCGC TCAGTATTCTCGGGATGTGGATGAGGTTTAATGA TTCTTGAAATAACCGAAACGTTGACAAATCGAGAACTGTTATTATTGATGAACGGTTTGTGA ] [-] EMBL CD087919 [ TTTCATTCGCNCCAGTATTCTCGGGATGTGGATGAGGTTTAATGA TTCTTGAAATAACCGAAACGTTGACAAATCGAAAACTGTTATTATTGATGAACGGTTTGTGAAAAATGTAGGATA TTTTTTACAAGTAACTACTGAAGTTTGCTACACACGTCGAAATAGAAA TATTTATTCGTCCATGTGGCTATAAAATTCCATATTGTAGAACCCTTTGAAAGATGCAAAGCGTTTGTTGA] consensusID : consensus_7404#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 276 fasta sequence [ACTGTCTTTATANTCATATTATAATAGTATATGATAGCTACGAAGAAATATNNTCATTCGCNCAGTATTCTCGGGATGTGGATGAGGTTTAATGATTCTTGAAATAACCGAAACGTTGACAAATCGAAAACTGTTATTATTGATGAACGGTTTGTGAAAAATGTAGGATATTTTTTACAAGTAACCACTAAAGTTTGCTACACACGTCGAAATAGAAATATTTATTCGTCCATGTGGCTATAAAATTCCATATTGTAGAATCCTTCAGGAGACACC] [-] EMBL CD087927 [ACTGTCTTTATANTCATATTATAATAGTATATGATAGCTACGAAGAAATATNNTCATTCGCNCAGTATTCTCGGGATGTGGATGAGGTTTAATGATTCTTGAAATAACCGAAACGTTGACAAATCGAAAACTGTTATTATTGATGAACGGTTTGTGAAAAATGTAGGATATTTTTTACAAGTAACCACTAAAGTTTGCTACACACGTCGAAATAGAAATATTTATTCGTCCATGTGGCTATAAAATTCCATATTGTAGAATCCTTCAGGAGACACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7404#0 CTGTCTCGTTGTCTTTATGATCATATTATAAATAGTATATGATAGCTACGAAGAAAATAT 60 consensus_7404#1 -------ACTGTCTTTATANTCATATTATAA-TAGTATATGATAGCTACGAAGAAATATN 52 ********* *********** ************************ consensus_7404#0 TTCATTCGCCCAGTATTCTCGGGATGTGGATGAGGTTTAATGATTCTTGAAATAACCGAA 120 consensus_7404#1 NTCATTCGCNCAGTATTCTCGGGATGTGGATGAGGTTTAATGATTCTTGAAATAACCGAA 112 ******** ************************************************** consensus_7404#0 ACGTTGACAAATCGAAAACTGTTATTATTGATGAACGGTTTGTGAAAAATGTAGGATATT 180 consensus_7404#1 ACGTTGACAAATCGAAAACTGTTATTATTGATGAACGGTTTGTGAAAAATGTAGGATATT 172 ************************************************************ consensus_7404#0 TTTTACAAGTAACTACTGAAGTTTGCTACACACGTCGAAATAGAAATATTTATTCGTCCA 240 consensus_7404#1 TTTTACAAGTAACCACTAAAGTTTGCTACACACGTCGAAATAGAAATATTTATTCGTCCA 232 ************* *** ****************************************** consensus_7404#0 TGTGGCTATAGAATTCCATATTGTAGAACCCTTTGAAAGATGCAAAGCGTTTGTTGA 297 consensus_7404#1 TGTGGCTATAAAATTCCATATTGTAGAATCCTTCAGGAGACACC------------- 276 ********** ***************** **** *** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||