These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7431#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 675 fasta sequence [TCGGTTGCCTAGGAAACAAAATTTTATTCGGAAGTTTGAAAATAAAAACAATTTAGATTTCCTACAAAAGTCAAGTAATCACTCAGTTGGGTTTAGTAATTTTTTCACGCCAATTAACTCTTGTTGCTATGAGACCAATAATGATTTACATCATAGTGAACATTCTGGATATCATCACTGTAGAGTTATACAACCCATCATAGGAACTGACAACCGTATTCGTAATAATCGTAGTCCACCGTTCTTTGAAAGACGTCGTTCAGCTTCTGGACCGGTTACTTTTTTTACTCGGTATTCTAAAACCAGTGATCAGCTGAAGAATAATACTGATGAAAGTTTATTTGACGGAAGACTTAACGAATTACTTTGTATGATTTGCGACCCTTCTATGCCGTTGCCAACATCTGGTTGTACTCAACATTTTTCCGGAAGATCTCTGTCTACTACAACTCCCCCTACTGCTTGTTTTAGCTCAGATATTACTGAAAGCTCTTATTTCCTGAAGCCCACTGGAAATTCAACTGTTGAAAATGTGCTGTTGTCAGCATTTCGTCTTCTAGCTTCCTTTTGTTTTTGGGGTGTTGAACCTGATATTGATGATGGGAAAGCTAATTCTTTAATTCCTCTCTATTCTACACCACGTTCGTTCTATGCTCTTATCTTGAATTTTTGGTG] [+] EMBL CD196386 [TCGGTTGCCTAGGAAACAAAATTTTATTCGGAAGTTTGAAAATAAAAACAATTTAGATTTCCTACAAAAGTCAAGTAATCACTCAGTTGGGTTTAGTAATTTTTTCACGCCAATTAACTCTTGTTGCTATGAGACCAATAATGATTTACATCATAGTGAACATTCTGGATATCATCACTGTAGAGTTATACAACCCATCATAGGAACTGACAACCGTATTCGTAATAATCGTAGTCCACCGTTCTTTGAAAGACGTCGTTCAGCTTCTGGACCGGTTACTTTTTTTACTCGGTATTCTAAAACCAGTGATCAGCTGAAGAATAATACTGATGAAAGTTTATTTGACGGAAGACTTAACGAATTACTTTGTATGATTTGCGACCCTTCTATGCCGTTGCCAACATCTGGTTGTACTCAACATTTTTCCGGAAGATCTCTGTCTACT ] [+] EMBL CD124901 [ GTTATACAACCCATCATAGGAACTGACAACCGTATTCGTAATAATCGTAGTCCACCGTTCTTTGAAAGACGTCGTTCAGCTTCTGGACCGGTTACTTTTTTTACTCGGTATTCTAAAACCAGTGATCAGCTGAAGAATAATACTGATGAAAGTTTATTTGACGGAAGACTTAACGAATTACTTTGTATGATTTGCGACCCTTCTATGCCGTTGCCAACATCTGGTTGTACTCAACATTTTTCCGGAAGATCTCTGTCTACTACAACTCCCCCTACTGCTTGTTTTAGCTCAGATATTACTGAAAGCTCTTATTTCCTGAAGCCCACTGGAAATTCAACTGTTGAAAATGTGCTGTTGTCAGCATTTCGTCTTCTAGCTTCCTTTTGTTTTTGGGGTGTTGAACCTGATATTGATGATGGGAAAGCTAATTCTTTAATTCCTCTCTATTCTACACCACGTTCGTTCTATGCTCTTATCTTGAATTTTTGGTG] consensusID : consensus_7431#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 504 fasta sequence [GTTATACAACCCATCATAGGAACTGACAACCGTATTCGTAATAATCGTAGTCCACCGTTCTTTGAAAGACGTCGTTCAGCTTCTGGACCGGTTACTTTTTTTACTCGGTATTCTAAAACCAGTGATCAGCTGAAGAATAATACTGATGAAAGTTTATTTGACGGAAGACTTAACGAATTACTTTGTATGATTTGCGACCCTTCTATGCCGTTGCCAACATCTGGTTGTACTCAACATTTTTCCGGAAGATCTCTGTCTACTACAACTCCCCCTACTGCTTGTTTTAGCTCAGATATTACTGAAAGCTCTTATTTCCTGAAGCCCACTGGAAATTCAACTGTTGAAAATGTGCTGTTGTCAGCATTTCGTCTTCTAGCTTCCTTTTGTTTTTGGGGTGTTGAACCTGATATTGATGATGGGAAAGCTAATTCTTTAATTCCTCTCTATTCTACACCACGTTCGTTCCATAATTTTGGGAAGATTTCCTATCCTGTTGCATATTGT] [+] EMBL CD125022 [GTTATACAACCCATCATAGGAACTGACAACCGTATTCGTAATAATCGTAGTCCACCGTTCTTTGAAAGACGTCGTTCAGCTTCTGGACCGGTTACTTTTTTTACTCGGTATTCTAAAACCAGTGATCAGCTGAAGAATAATACTGATGAAAGTTTATTTGACGGAAGACTTAACGAATTACTTTGTATGATTTGCGACCCTTCTATGCCGTTGCCAACATCTGGTTGTACTCAACATTTTTCCGGAAGATCTCTGTCTACTACAACTCCCCCTACTGCTTGTTTTAGCTCAGATATTACTGAAAGCTCTTATTTCCTGAAGCCCACTGGAAATTCAACTGTTGAAAATGTGCTGTTGTCAGCATTTCGTCTTCTAGCTTCCTTTTGTTTTTGGGGTGTTGAACCTGATATTGATGATGGGAAAGCTAATTCTTTAATTCCTCTCTATTCTACACCACGTTCGTTCCATAATTTTGGG ] [-] EMBL CD124924 [ TTATACAACCCATCATAGGAACTGACAACCGTATTCGTAATAATCGTAGTCCACCGTTCTTTGAAAGACGTCGTTCAGCTTCTGGACCGGTTACTTTTTTTACTCGGTATTCTAAAACCAGTGATCAGCTGAAGAATAATACTGATGAAAGTTTATTTGACGGAAGACTTAACGAATTACTTTGTATGATTTGCGACCCTTATATGCCGTTGCCAACATCTGGTTGTACTCAACATTTTTCCGGAAGATCTCTGTCTACTACAACTCCCCCTACTGCTTGTTTTAGCTCAGATATTACTGAAAGCTCTTATTTCCTGAAGCCCACTGGAAATTCAACTGTTGAAAATGTGCTGTTGTCAGCATTTCGTCTTCTAGCTTCCTTTTGTTTTTGGGGTGTTGAACCTGATATTGATGATGGGAAAGCTAATTCTTTAATTCCTCTCTATTCTACACCACGTTCGTTCCATAATTTTGGGA ] [+] EMBL CD132981 [ AACCGTATTCGTAATAATAGTAGTCCACCGTTCTTTGAAAGACGTCGTTCAGCTTCTGGACCGGTTACTTTTTTTACTCGGTATTCTAAAACCAGTGATCAGCTGAAGAATAATACTGATGAAAGTTTATTTGACGGAAGACTTAACGAATTACTTTGTATGATTTGCGACCCTTCTATGCCGTTGCCAACATCTGGTTGTACTCAACATTTTTCCGGAAGATCTCTGTCTACTACAACTCCCCCTACTGCTTGTTTTAGCTCAGATATTACTGAAAGCTCTTATTTCCTGAAGCCCACTGGAAATTCAACTGTTGAAAATGTGCTGTTGTCTGCATTTCGTCTTCTAGCTTCCTTTTGTTTTTGGGGTGTTGAACCTGATATTGATGATGGGAAAGCTAATTCTTTAATTCCTCTCTATTCTACACCACGTTCGTCCCATAATTTTGGGAAGATTTCCTATCCTGTTGCATATTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7431#0 TCGGTTGCCTAGGAAACAAAATTTTATTCGGAAGTTTGAAAATAAAAACAATTTAGATTT 60 consensus_7431#1 ------------------------------------------------------------ consensus_7431#0 CCTACAAAAGTCAAGTAATCACTCAGTTGGGTTTAGTAATTTTTTCACGCCAATTAACTC 120 consensus_7431#1 ------------------------------------------------------------ consensus_7431#0 TTGTTGCTATGAGACCAATAATGATTTACATCATAGTGAACATTCTGGATATCATCACTG 180 consensus_7431#1 ------------------------------------------------------------ consensus_7431#0 TAGAGTTATACAACCCATCATAGGAACTGACAACCGTATTCGTAATAATCGTAGTCCACC 240 consensus_7431#1 ----GTTATACAACCCATCATAGGAACTGACAACCGTATTCGTAATAATCGTAGTCCACC 56 ******************************************************** consensus_7431#0 GTTCTTTGAAAGACGTCGTTCAGCTTCTGGACCGGTTACTTTTTTTACTCGGTATTCTAA 300 consensus_7431#1 GTTCTTTGAAAGACGTCGTTCAGCTTCTGGACCGGTTACTTTTTTTACTCGGTATTCTAA 116 ************************************************************ consensus_7431#0 AACCAGTGATCAGCTGAAGAATAATACTGATGAAAGTTTATTTGACGGAAGACTTAACGA 360 consensus_7431#1 AACCAGTGATCAGCTGAAGAATAATACTGATGAAAGTTTATTTGACGGAAGACTTAACGA 176 ************************************************************ consensus_7431#0 ATTACTTTGTATGATTTGCGACCCTTCTATGCCGTTGCCAACATCTGGTTGTACTCAACA 420 consensus_7431#1 ATTACTTTGTATGATTTGCGACCCTTCTATGCCGTTGCCAACATCTGGTTGTACTCAACA 236 ************************************************************ consensus_7431#0 TTTTTCCGGAAGATCTCTGTCTACTACAACTCCCCCTACTGCTTGTTTTAGCTCAGATAT 480 consensus_7431#1 TTTTTCCGGAAGATCTCTGTCTACTACAACTCCCCCTACTGCTTGTTTTAGCTCAGATAT 296 ************************************************************ consensus_7431#0 TACTGAAAGCTCTTATTTCCTGAAGCCCACTGGAAATTCAACTGTTGAAAATGTGCTGTT 540 consensus_7431#1 TACTGAAAGCTCTTATTTCCTGAAGCCCACTGGAAATTCAACTGTTGAAAATGTGCTGTT 356 ************************************************************ consensus_7431#0 GTCAGCATTTCGTCTTCTAGCTTCCTTTTGTTTTTGGGGTGTTGAACCTGATATTGATGA 600 consensus_7431#1 GTCAGCATTTCGTCTTCTAGCTTCCTTTTGTTTTTGGGGTGTTGAACCTGATATTGATGA 416 ************************************************************ consensus_7431#0 TGGGAAAGCTAATTCTTTAATTCCTCTCTATTCTACACCACGTTCGTTCTATGCTCTTAT 660 consensus_7431#1 TGGGAAAGCTAATTCTTTAATTCCTCTCTATTCTACACCACGTTCGTTCCATAATTTTGG 476 ************************************************* ** * ** consensus_7431#0 CTTGAATTTTTGGTG------------- 675 consensus_7431#1 GAAGATTTCCTATCCTGTTGCATATTGT 504 ** ** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||