These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7509#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 630 fasta sequence [GCTCTAAACCAAAAATTCTGGATGCAAAGTCGTTCTCTACCTCTAAATCAAGTAGTGACAATGTCAGACATAATTCGACAAAAAAACCAGTATCAAGTAATGTATTGTGCGACAGTAAAGGTTCAACCTCTGAATCTAAACTGAAATCTATCAGAGATTCAAAGGGTGAGAGTCGTGACATCATAGCGGACGACAATAAACAACAAGGTCGGTCGTCGAAACCAGATACTTCATCTAACAATTCTACTTTGTTGAAAAATGATAGTAGTCGCAAAAAAGAAATGTCTCCATCTACACATACACGAAAACGCCGTTACTCAAAAACAGATAGCGATGATAAAGAAGCGATTCCTTCAAAACAGAGTCGACCGAGCTTAACATCATCTGGTGATTCATCTGTTGTAGGCGAAGCATTGGCAGCTTATAAAAAGAACCATACGGGGACACAACATCATCGTTCGGATCACCGTAGACGTTCGTCCAGCAATCGTCCTAGCTCTCCAAACCATCGAAGTAGCTTTAAGAGTAGTTTTCCAGAAGGACCTCGTGTCAAAGACAAAACGGATTCCATTTCGCATTCTCGTGACAGCGGCCGACGTCGTTCACGTTCATTTAACCAAAGACATCGTT] [-] EMBL CD158900 [GCTCTAAACCAAAAATTCTGGATGCAAAGTCGTTCTCTACCTCTAAATCAAGTAGTGACAATGTCAGACATAATTCGACAAAAAAACCAGTATCAAGTAATGTATTGTGCGACAGTAAAGGTTCAACCTCTGAATCTAAACTGAAATCTATCAGAGATTCAAAGGGTGAGAGTCGTGACATCATAGCGGACGGCAATAAACAACAAGGTCGGTCGTCGAAACCAGATACTTCATCTAACAATTCTACTTTGTTGAAA ] [-] EMBL CD154885 [ CTCTACCTCTAAATCAAGTAGTGACAATGTCAGACATAATTCGACAAAAAAACCAGTATCAAGTAATGTATTGTGCGACAGTAAAGGTTCAACCTCTGAATCTAAACTGAAATCTATCAGAGATTCAAAGGGTGAGAGTCGTGACATCATAGCGGACGACAATAAACAACAAGGTCGGTCGTCGAAACCCGAAACTTCATCTAACAATTCTACTTTGTTGAAAAATGATAGTAGTCGCAAAAAAGAAATGTCTCCATCTACACATACACGAAAACGCCGTTACTCAAAAACAGATAGCGATGATAAAGAAGCGATTCCTTCAAAACAGAGTCGACCGAGCTTAACATCATCTGGTGATTCATCTGTT ] [+] EMBL CD190437 [ GTAAAGGTTCAACCTCTGAATCTAAACTGAAATCTATCAGAGATTCAAAGGGTGAGAGTCGTGACATCATAGCGGACGACAATAAACAACAAGGTCGGTCGTCGAAACCAGATACTTCATCTAACAATTCTACTTTGTTGAAAAATGATAGTAGTCGCAAAAAAGAAATGTCTCCATCTACACATACACGAAAACGCCGTTACTCAAAAACAGATAGCGATGATAAAGAAGCGATTCCTTCAAAACAGAGTCGACCGAGCTTAACATCATCTGGTGATTCATCTGTTGTAGGCGAAGCATTGGCAGCTTATAAAAAGAACCATACGGGGACACAACATCATCGTTCGGATCACCGTAGACGTTCGTCCAGCAATCGTCCTAGCTCTC ] [+] EMBL CD170916 [ AATGTCTCCATCTACACATACACGAAAACGCCGTTACTCAAAAACAGATAGCGATGATAAAGAAGCGATTCCTTCAAAACAGAGTCGACCGAGCTTAACATCATCTGGTGATTCATCTGTTGTAGGCGAAGCATTGGCAGCTTATAAAAAGAACCATACGGGGACACAACATCATCGTTCGGATCACCGTAGACGTTCGTCCAGCAATCGTCCTAGCTCTCCAAACCATCGAAGTAGCTTTAAGAGTAGTTTTCCAGAAGGACCTCGTGTCAAAGACAAAACGGATTCCATTTCGCATTCTCGTGACAGCGGCCGACGTCGTTCACGTTCATTTAACCAAAGACATCGTT] consensusID : consensus_7509#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 177 fasta sequence [TAAATAATATATAAGGATGGTGGGAATATATAACACATGTGACACCTGTTACACTATCTACATGTCTGACTCAGCAAAACAACCAATCATTATCATTCTCGCCCACTCTTCAGTAATCCTATTTTATTGACTGAGTCTTACTTTAATCCTATCGGAGTTTACTCATTATGTAATGAC] [+] EMBL CD111420 [TAAATAATATATAAGGATGGTGGGAATATATAACACATGTGACACCTGTTACACTATCTACATGTCTGACTCAGCAAAACAACCAATCATTATCATTCTCGCCCACTCTTCAGTAATCCTATTTTATTGACTGAGTCTTACTTTAATCCTATCGGAGTTTACTCATTATGTAATGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7509#0 GCTCTAAACCAAAAATTCTGGATGCAAAGTCGTTCTCTACCTCTAAATCAAGTAGTGACA 60 consensus_7509#1 ----TAAATAATATATAAGGATGGTGGGAATATATAACACATGTGACACCTGTTACACTA 56 **** * * ** * * * ** * * * * ** * consensus_7509#0 ATGTCAGACATAATTCGACAAAAAAACCAGTATCAAGTAATGT-----ATTGTGCGACAG 115 consensus_7509#1 TCTACATGTCTGACTCAGCAAAACAACCAATCATTATCATTCTCGCCCACTCTTCAGTAA 116 ** * * ** ***** ***** * * * * * * * * * * consensus_7509#0 TAAAGGTTCAACCTCTGAATCTAAACTGAAATCTATCAGAGATTCAAAGGGTGAGAGTCG 175 consensus_7509#1 TCCTATTTTATTGACTGAGTCTTACTTTAATCCTATCGGAGTTT-----------ACTCA 165 * ** * **** *** * * ** ***** *** ** * ** consensus_7509#0 TGACATCATAGCGGACGACAATAAACAACAAGGTCGGTCGTCGAAACCAGATACTTCATC 235 consensus_7509#1 TTATGTAATGAC------------------------------------------------ 177 * * * ** * consensus_7509#0 TAACAATTCTACTTTGTTGAAAAATGATAGTAGTCGCAAAAAAGAAATGTCTCCATCTAC 295 consensus_7509#1 ------------------------------------------------------------ consensus_7509#0 ACATACACGAAAACGCCGTTACTCAAAAACAGATAGCGATGATAAAGAAGCGATTCCTTC 355 consensus_7509#1 ------------------------------------------------------------ consensus_7509#0 AAAACAGAGTCGACCGAGCTTAACATCATCTGGTGATTCATCTGTTGTAGGCGAAGCATT 415 consensus_7509#1 ------------------------------------------------------------ consensus_7509#0 GGCAGCTTATAAAAAGAACCATACGGGGACACAACATCATCGTTCGGATCACCGTAGACG 475 consensus_7509#1 ------------------------------------------------------------ consensus_7509#0 TTCGTCCAGCAATCGTCCTAGCTCTCCAAACCATCGAAGTAGCTTTAAGAGTAGTTTTCC 535 consensus_7509#1 ------------------------------------------------------------ consensus_7509#0 AGAAGGACCTCGTGTCAAAGACAAAACGGATTCCATTTCGCATTCTCGTGACAGCGGCCG 595 consensus_7509#1 ------------------------------------------------------------ consensus_7509#0 ACGTCGTTCACGTTCATTTAACCAAAGACATCGTT 630 consensus_7509#1 ----------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||