These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7524#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1039 fasta sequence [CGAGGCCAGTAATTCGGCACGAGGAGCATGAGTCAATTGAAGCTAGACCACCTCGAAAACCTGGAAGCACTGCTGAGGAGTTCCATAGTATTTTTTTTGTTTTACGATGGTTGAATTATATACTATAGGATCTAGAAAATTAATTACCTCTTAAATCATTATATTTAAAGCAGATTTTTTACATTTTGAATAATAAGAATATAATCACTGCTTTATTGGTTGATAAAATTTCATATGATTACTAAGTCCTATGGTATATAAAACTCTGTACGTAAGCAAATTAGTTGATAAAAGTATCATTGAATATGCAGTTGAAGGATGAATGCTCAAAGTCGTATCTTTCATCGTTTGAAATCCATCGAACTCATTAAGGGCAGAGTAATATTATTTTCAGATTGTTTCTGGGAAAACTTACTTTTTCTTTTAATAAAACCAGATTGTGTAGTTCAATTCTTTAAAATAATTATTACTTATGATATTCCATATATGAAGCTAACAAGAATCTATATATAAACTGTACACTCGTTTATTTTATAAGCTTCTACAACTGTGTATTTATTTGACCGGGAATGTCCTTCCCATTCTGCATTTTATCAATGTAACTTCTCAATCAAATGTAATCATTTACACAATAAACCATTGAAACGAAAAAAGATAATGCAAAATAATACTTGTTTAACTGACTGTCAAAGTTTTCAAAAGTGATTACTGAATAGATATTGACTTGTAATGAAAAATACCGTGAAAAGTCATCATTGTAATAGGATTTAGTCATTTGTTAATCTGTTCACATTACTATTGTTTATTTAAAATTAACAATCCGGGTGTTCTTTAAAAATTTTTATTTGTTTAGTTTCATCTTTGATCTTCTTAGTCGAGCTGGAATTATCACTGGNACCATATACCATACAACTGGTATCGATGAAATATGTCATTCACTATTCACACATAGTAATGGNTATATATNGCATATGGCTATTAANTTTTTTTTGGTAAATGGCTTAAAGATTTTGTTTTCCAAGAGAGATCGACCATTAAA] [+] EMBL CD081776 [CGAGGCCAGTAATTCGGCACGAGGAGCATGAGTCAATTGAAGCTAGACCACCTCGAAAACCTGGAAGCACTGCTGAGGAGTTCCATAGTATTTTTTTTGTTTTACGATGGTTGAATTATATACTATAGGATCTAGAAAATTAATTACCTCTTAAATCATTATATTTAAAGCAGATTTTTTACATTTTGAATAATAAGAATATAATCACTGCTTTATTGGTTGATAAAATTTCATATGATTACTAAGTCCTATGGTATATAAAACTCTGTACGTAAGCAAATTAGTTGATAAAAGTATCATTGAATATGCAGTTGAAGGATGAATGCTCAAAGTCGTATCTTTCATCGTTTGAAATCCATCGAACTCATTAAGGGCAGAGTAATATTATTTTCAGATTGTTTCTGGGAAAACTTACTTTTTCTTTTAATAAAACCAGATTGTGTAGTTCAATTCTTTAAAATAATTATTACTTATGATATTCCATATATGAAGCTAACAAGAATCTATATATAAACTGTACACTCGTTTATTTTATAAGCTTCTACAACTGTGTATTTATTTGACCGGGAATGTCCTTCCCATTCTGCATTTTATCAATGTAACTTCTCAATCAAATGTAATCATTTACACAATAAACCATTGAAACGAAAAAAGATAATGCAAAATAATACTTGTTTAACTGACTGTCAAAGTTTTCAAAAGTGATTACTGAATAGATATTGACTTGTAATGAAAAATACCGTGAAAAGTCATCATTGTAATAGGATTTAGTCATTTGTTAATCTGTTCACATTACTATTGTTTATTTAAAATTAACAATCCGGGTGTTCTTTAAAAATTTTTATTTGTTTAGTTTCATCTTTGATCTTCTTAGTCGAGCTGGAATTATCACTGGNACCATATACCATACAACTGGTATCGATGAAATATGTCATTCACTATTCACACATAGTAATGGNTATATATNGCATATGGCTATTAANTTTTTTTTGGTAAATGGCTTAAAGATTTTGTTTTCCAAGAGAGATCGACCATTAAA] consensusID : consensus_7524#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 818 fasta sequence [CANNATTGTTAGCTGATAATATATCATCTTTAATATGTAAACGATAACACGAGATTGAATCATTATGTTGTAGTNTGAAATTTGTCTTAAAATTGAAAGTAACATTTGCTTCACCTGGGAGATACCCGAACACAGTCTTAAGAAACTCACTGACTTCGTGTAAACCTTTGGTTTTGCGTATTTTGACATTATGTGTTGAATTAGTGAATGACATAATTTCATCGATTACAGTTTGTATGGTATTATTGGTCCAGTGATTAATTCCAGCTCGACTAAGAAGATCAAAGATGAAACTGCCATCTTTGGTAAGACCTTCAGGAGGAACATTTAATTCATCAATTAATCTTTCTAATTCAATCAACTGTCCTTTTAATGTGATCATTTTCTCGATGCTCAAAGCTTCAATTGCATTTCCTTCAGGATGCGTCATATCAAACAATCCTTTTCTATTCATTATAACTGAGAGTTTTTGTTCACTATTTTGATTCACGTTGCAGTTACTGTCTGAAAGTTCTATTTCTTGTTGCTCCTTAGTATGATCGAGTACAACTTCGCACACACATTTGACATGTTCAATAGCTGACGCTAATAAGGCAGAACTTAATGTCACCGATGAAGCATCTTCACATACTTGCTCAATATTATGAGCTTCATCGAAAATAACTGTTGTATTTTCAAGGTTAATATTATAAAGACTTCGAATTCGTGGGTCAAGCACGTAATTATAAGGCATGAAAATCAAAGATGAATCAGTCTTAAGTTCTCTCGATATGAAATAAGGACAACATCTAAAACAAAAAAACAGTACAAACTTATTT] [-] EMBL CD195191 [CANNATTGTTAGCTGATAATATATCATCTTTAATATGTAAACGATAACACGAGATTGAATCATTATGTTGTAGTNTGAAATTTGTCTTAAAATTGAAAGTAACATTTGCTTCACCTGGGAGATACCCGAACACAGTCTTAAGAAACTCACTGACTTCGTGTAAACCTTTGGTTTTGCGTATTTTGACATTATGTGTTGAATTAGTGAATGACATAATTTCATCGATTACAGTTTGTATGGTATTATTGGTCCAGTGATTAATTCCAGCTCGACTAAGAAGATCAAAGATGAAACTGCCATCTTTGGTAAGACCTTCAGGAGGAACATTTAATTCATCAATTAATCTTTCTAATTCAATCAACTGTCCTTTTAATGTGATCATTTTCTCGATGCTCAAAGCTTCAATTGCATTTCCTTCAGGATGCGTCATATCAAACAATCCTTTTCTATTCATTATAACTGAGAGTTTTTGTTCACTATTTTGATTCACGTTGCAGTTACTGTCTGAAAGTTCTATTTCTTGTTGCTCCTTAGTATGA ] [-] EMBL CD195185 [ TGTTAGCTGATAATATATCATCTTTAATATGTAAACGATAACACGAGATTGAATCATTATGTTGTAGTNTGAAATTGTTCTTAAAATTGAAAGTAACATTTGCTTCACCTGGGAGATACCCGAACACAGTCTTAAGAAACTCACTGACTTCGTGTAAACCTTTGGTTTTGCGTATTTTGACATTATGTGTTGAATTAGTGAATGACATAATTTCATCGATTACAGTTTGTATGGTATTATTGGTCCAGTGATTAATTCCAGCTCGACTAAGAAGATCAAAGATGAAACTGCCATCTTTGGTAAGACCTTCAGGAGGAACATTTAATTCATCAATTAATCTTTCTAATTCAATCAACTGTCCTTTTAATGTGATCATTTTCTCGATGCTCAAAGCTTCAATTGCATTTCCTTCAGGATGCGTCATATCAAACAATCCTTTTCTATTCATTATAACTGAGAGTTTTTGTTCACTATTTTGATTCACGTTGCAGTTACTGTCTGAAAGTTCTATTTCTTGTTGCTCCTTAGTATGA ] [+] EMBL CD121592 [ TATCAAACAATCCTTTTCTATTCATTATAACTGAGAGTTTTTGTTCACTATTTTGATTCACGTTGCAGTTACTGTCTGAAAGTTCTATTTCTTGTTGCTCCTTAGTATGATCGAGTACAACTTCGCACACACATTTGACATGTTCAATAGCTGACGCTAATAAGGCAGAACTTAATGTCACCGATGAAGCATCTTCACATACTTGCTCAATATTATGAGCTTCATCGAAAATAACTGTTGTATTTTCAAGGTTAATATTATAAAGACTTCGAATTCGTGGGTCAAGCACGTAATTATAAGGCATGAAAATCAAAGATGAATCAGTCTTAAGTTCTCTCGATATGAAATAAGGACAACATCTAAAACAAAAAAACAGTACAAACTTATTT] consensusID : consensus_7524#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 758 fasta sequence [ATCATTGAATATGCAGTTGAAGGATGAATGCTCAAAGTCGTATCTTTCATCGTTTGAAATCCATCGAACTCATTAAGGGCAGAGTAATATTATTTTCAGATTGTTTCTGGGAAAACTTACTTTTTCTTTTAATAAAACCAGATTGTGTAGTTCAATTCTTTAAAATAATTATTACTTATGATATTCCATATATGAAGCTAACAAGAATCTATATATAAACTGTACACTCGTTTATTTTATAAGCTTCTACAACTGTGTATTTATTTGACCGGGAATGTCCTTCCCATTCTGCATTTTATCAATGTAACTTCTCAATCAAATGTAATCATTTACACAATAAACCATTGAAACGAAAAAAGATAATGCAAAATAATACTTGTTTAACTGACTGTCAAAGTTTTCAAAAGTGATTACTGAATAGATATTGACTTGTAATGAAAAATACCGTGAAAAGTCATCATTGTAATAGGATTTAGTCATTTGTTAATCTGTTCACATTACTATTGTTTATTTAAAATTAACAATCCGGGTGTTCTTTAAAAATTTTTATTTGTTTAGTTTCATCTTTGATCTTCTTAGTCGAGCTGGAATTAATCACTGGACCAATAATACCATACAAACTGTAATCGATGAAATTATGTCATTCACTAATTCAACACATAGTAATTGTTATTAGATGCATTATTGCTTATTTAATTTTATTTTGTTAAATGTCTTTTAAAGATTTTTGTATTCCAAAAGAGAAGATCAGAGCTTTT] [-] EMBL CD075507 [ATCATTGAATATGCAGTTGAAGGATGAATGCTCAAAGTCGTATCTTTCATCGTTTGAAATCCATCGAACTCATTAAGGGCAGAGTAATATTATTTTCAGATTGTTTCTGGGAAAACTTACTTTTTCTTTTAATAAAACCAGATTGTGTAGTTCAATTCTTTAAAATAATTATTACTTATGATATTCCATATATGAAGCTAACAAGAATCTATATATAAACTGTACACTCGTTTATTTTATAAGCTTCTACAACTGTGTATTTATTTGACCGGGAATGTCCTTCCCATTCTGCATTTTATCAATGTAACTTCTCAATCAAATGTAATCATTTACACAATAAACCATTGAAACGAAAAAAGATAATGCAAAATAATACTTGTTTAACTGACTGTCAAAGTTTTCAAAAGTGATTACTGAATAGATATTGACTTGTAATGAAAAATACCGTGAAAAGTCATCATTGTAATAGGATTTAGTCATTTGTTAATCTGTTCACATTACTATTGTTTATTTAAAATTAACAATCCGGGTGTTCTTTAAAAATTTTTATTTGTTTAGTTTCATCTTTGATCTTCTTAGTCGAGCTGGAATTAATCACTGGACCAATAATACCATACAAACTGTAATCGATGAAATTATGTCATTCACTAATTCAACACATAGTAATTGTTATTAGATGCATTATTGCTTATTTAATTTTATTTTGTTAAATGTCTTTTAAAGATTTTTGTATTCCAAAAGAGAAGATCAGAGCTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7524#0 CGAGGCCAGTAATTCGGCACGAGGAGCATGAGTCAATTGAAGCTAGACCACCTCGAAAAC 60 consensus_7524#2 ------------------------------------------------------------ consensus_7524#1 ------------------------------------------------------------ consensus_7524#0 CTGGAAGCACTGCTGAGGAGTTCCATAGTATTTTTTTTGTTTTACGATGGTTGAATTATA 120 consensus_7524#2 ------------------------------------------------------------ consensus_7524#1 ------------------------------------------------------------ consensus_7524#0 TACTATAGGATCTAGAAAATTAATTACCTCTTAAATCATTATATTTAAAGCAGATTTTTT 180 consensus_7524#2 ------------------------------------------------------------ consensus_7524#1 ------------------------------------------------------------ consensus_7524#0 ACATTTTGAATAATAAGAATATAATCACTGCTTTATTGGTTGATAAAATTTCATATGATT 240 consensus_7524#2 ------------------------------------------------------------ consensus_7524#1 -----------------------------------------------------CANNATT 7 consensus_7524#0 ACTAAGTCCTATGGTATATAAAACTCTGTACGTAAGCAAATTAGTTGATAAAAGTATCAT 300 consensus_7524#2 -------------------------------------------------------ATCAT 5 consensus_7524#1 GTTAG--CTGATAATATATCATCTTTAATATGTAAACGA--TAACACGAGATTGAATCAT 63 ***** consensus_7524#0 TGAATATGCAGTT-GAAGGATG----AATGCTCAAAGTCGTATCTTTCATCGTTTGAAAT 355 consensus_7524#2 TGAATATGCAGTT-GAAGGATG----AATGCTCAAAGTCGTATCTTTCATCGTTTGAAAT 60 consensus_7524#1 TATGT-TGTAGTNTGAAATTTGTCTTAAAATTGAAAGTAACAT-TTGCTTCACCTGGGAG 121 * * ** *** *** ** ** * ***** ** ** * ** ** * consensus_7524#0 CCATC-GAACTCA---TTAAGGG-CAGAGTAATATTATTTTCAGATT-GTTTCTGGGAAA 409 consensus_7524#2 CCATC-GAACTCA---TTAAGGG-CAGAGTAATATTATTTTCAGATT-GTTTCTGGGAAA 114 consensus_7524#1 ATACCCGAACACAGTCTTAAGAAACTCACTGACTTCGTGTAAACCTTTGGTTTTGCGTAT 181 * * **** ** ***** * * * * * * * * ** * ** ** * * consensus_7524#0 ACTTACTTTTTCTTTTAATAAAACCAGATTGTGTAGTTCAATTCTTTAAAATAATTATTA 469 consensus_7524#2 ACTTACTTTTTCTTTTAATAAAACCAGATTGTGTAGTTCAATTCTTTAAAATAATTATTA 174 consensus_7524#1 TTTGACATTATGTGTTGA-ATTAGTGAATGACATAATTTCATCGATTACAGTTTGTATGG 240 * ** ** * * ** * * * ** ** ** ** *** * * *** consensus_7524#0 CTTATGATATTCCATATATGAAGCTAACAAGAATCTATATATAAACTGTACACTCGTT-T 528 consensus_7524#2 CTTATGATATTCCATATATGAAGCTAACAAGAATCTATATATAAACTGTACACTCGTT-T 233 consensus_7524#1 TATTATTGGTCCAGTGATTAATTCCAGCTCGACTAAGAAGATCAAAGATGAAACTGCCAT 300 * * * * * * * * * ** * * ** ** * * * * consensus_7524#0 ATTTTATAAGCTTCTACAACTGTGTATTTATTTGACCGGGAATGTCCTTCCCATTCTGCA 588 consensus_7524#2 ATTTTATAAGCTTCTACAACTGTGTATTTATTTGACCGGGAATGTCCTTCCCATTCTGCA 293 consensus_7524#1 CTTTGGTAAGACCTTCAGGAGGAACATTTAATTCATCAATTA-ATCTTTCTAATTCAATC 359 *** **** * * ***** ** * * * ** *** **** consensus_7524#0 TTTTATCAATGTAACTTCTCAATCAAATGTAATCATTTACACAATAAAC-CATTGAAACG 647 consensus_7524#2 TTTTATCAATGTAACTTCTCAATCAAATGTAATCATTTACACAATAAAC-CATTGAAACG 352 consensus_7524#1 AACTGTCCTTTTAATGTGATCATTTTCT-CGATGCTCAAAGCTTCAATTGCATTTCCTTC 418 * ** * *** * ** * ** * * * ** **** consensus_7524#0 AAAAAAGATAATGCAAAATAATACTTGTTTA---ACTGACTGTCAAAGTTTTCAAAAGTG 704 consensus_7524#2 AAAAAAGATAATGCAAAATAATACTTGTTTA---ACTGACTGTCAAAGTTTTCAAAAGTG 409 consensus_7524#1 AGGATGCGTCATATCAAACAATCCTTTTCTATTCATTATAACTGAGAGTTTTTGTTCACT 478 * * * ** *** *** *** * ** * * * * ****** consensus_7524#0 ATTACTGAATAGATATTGACTTGTAATGAAAAATACCGTGAAAAGTCATCATTGTAATAG 764 consensus_7524#2 ATTACTGAATAGATATTGACTTGTAATGAAAAATACCGTGAAAAGTCATCATTGTAATAG 469 consensus_7524#1 ATTTTGATTCACGTTGCAGTTACTGTCTGAAAGTTCTATTTCTTGTTGCTCCT-TAGTAT 537 *** * * * * *** * * * ** * ** ** consensus_7524#0 GATTTAGTCATTTGTTAATCTGTTCACATTAC-TATTGTTTATTTAAAATTAACAATCCG 823 consensus_7524#2 GATTTAGTCATTTGTTAATCTGTTCACATTAC-TATTGTTTATTTAAAATTAACAATCCG 528 consensus_7524#1 GATCGAGT-ACAACTTCGCACACACATTTGACATGTTCAATAGCTGACGCTAATAAGGCA 596 *** *** * ** ** * ** * ** ** * * *** ** * consensus_7524#0 GGTGTTCTTTAAAAATTTTTATTTGTTTAGTTTCATCTTTGATCTTCTTAGTCGAGCTGG 883 consensus_7524#2 GGTGTTCTTTAAAAATTTTTATTTGTTTAGTTTCATCTTTGATCTTCTTAGTCGAGCTGG 588 consensus_7524#1 GAACTT--------AATGTCACCGATGAAGCATCTTCACATACTTGCTCAATATTATGAG 648 * ** * * * * * ** ** ** * * ** * * * consensus_7524#0 AATTA-TCACTGGNACCATA-TACCATACAA-CTGGTATCGATGAAAT-ATGTCATTCAC 939 consensus_7524#2 AATTAATCACTGGACCAATAATACCATACAAACTGTAATCGATGAAATTATGTCATTCAC 648 consensus_7524#1 CTTCATCGAAAATAACTGTTGTATTTTCAAGGTTAATATT-ATAAAGACTTCGAATTCGT 707 * * * * * ** * * * ** ** ** * **** consensus_7524#0 TATTC--ACACATAGTAATG-GNTATATATNGCAT--ATGGCTA---TTAANTTTTTTTT 991 consensus_7524#2 TAATTCAACACATAGTAATT-GTTATTAGATGCATT-ATTGCTTA-TTTAATTTTATTTT 705 consensus_7524#1 GGGTCAAGCACGTAATTATAAGGCATGAAAATCAAAGATGAATCAGTCTTAAGTTCTCTC 767 * *** ** * ** * ** ** ** * * * ** * * consensus_7524#0 GGTAAATGGCTT--AAAGATTTT-GTTTTCCAAGAGAGATCGACCATTAAA--- 1039 consensus_7524#2 GTTAAATGTCTTTTAAAGATTTTTGTATTCCAAAAGAGAA-GATCAGAGCTTTT 758 consensus_7524#1 GATATGAAATAAGGACAACATCTAAAACAAAAAAACAGTACAAACTTATTT--- 818 * ** * * * * ** * ** * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||