These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7875#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 913 fasta sequence [AAGACAACCGATTTGGAGTTTGATTATACTCACATTTTTAACTTGAATCAACTCGCGAAACTATCATCTGATGTCACCGGCAATATATATCACACTTCCATAGGCTTCCCATTTTATTAATATTAGGTTTGTAAGGTAATATATCAGTATTCCATTTTCCTACCTATTCAATTGAAGAAAGAATATAAGGATACCAAACAAAGAAATTGTTTGAAAGGATTCGAAACATATTTTCGATTACTTGTCTTTTTGAATTTACTTAAATATTTCTATTCAATATAAAAATTTTAAGGTTTTTTTTAATGAACTCTCTTCAGCCTCTAACTTGAACAACCAAAATATTGGATTGAATAGTTACACTAATACTTTGGCTTCCAGACCACGGATTAATGGCACATCTGTAGGAACTGGCAATAGTGTTGTTGCTGCCGCAATTTCAGCTGCTACCGCTGTAGCTGCAATGTCAGGTTCAGGAGTCGTCAATAATCATACTTTAAGTGGACTATGTCATTTACCAAGTTTACATTCCAGTAATTTATCGGGAAACAATTTAATTTTAAGTCAGAATAAGTCATCATTATCACCGTTATCATCATCTACAATATCTACAGTAACAACGACATCTATTCCATCGTTGTCATCGTCAGTCTCATCATCATCATCTGCAGCTCTAGTTAATCTTCTTAAAGCTCAACATCAACAACAGAATTTAGCGGCAGCCGCTACAGCTGTTGCTTTACAACAGCACAATCAATTGAATGGTACGAACAGTCAAAATACTCAAGCTATACTTGCTGCTCTTATGCTTCAAAATCTCAATACTCCTAATTAACTTATCAAACAATCTTTAAATGGTCTATCATTTCCATTAGAGAATGCCGTTTCAAATCTCGTGATTTTCCACCTAAACCAG] [+] EMBL CD067126 [AAGACAACCGATTTGGAGTTTGATTATACTCACATTTTTAACTTGAATCAACTCGCGAAACTATCATCTGATGTCACCGGCAATATATATCACACTTCCATAGGCTTCCCATTTTATTAATATTAGGTTTGTAAGGTAATATATCAGTATTCCATTTTCCTACCTATTCAATTGAAGAAAGAATATAAGGATACCAAACAAAGAAATTGTTTGAAAGGATTCGAAACATATTTTCGATTACTTGTCTTTTTGAATTTACTTAAATATTTCTATTCAATATAAAAATTTTAAGGTTTTTTTTAATGAACTCTCTTCAGCCTCTAACTTGAACAACCAAAATATTGGATTGAATAGTTACACTAATACTTTGGCTTCCAGACCACGGATTAATGGCACATCTGTAGGAACTGGCAATAGTGTTGTTGCTGCCGCAATTTCAGCTGCTACCGCTGTAGCTGCAATGTCAGGTTCAGGAGTCGTCAATAATCATACTTTAAGTGGACTATGTCATTTACCAAGTTTACATTCCAGTAATTTATCGGGAAACAATTTA ] [-] EMBL CD168058 [ ATCATACTTTAAGTGGACTATGTCATTTACCAAGTTTACATTCCAGTAATTTATCGGGTAACAATTTAATTTTAAGTCAGAATAAGTCATCATTATCACCGTTATCATCATCTACAATATCTACAGTAACAACGACATCTATTCCATCGTTGTCATCGTCAGTCTCATCATCATCATCTGCAGCTCTAGTTAATCTTCTTAAAGCTCAACATCAACAACAGAATTTAGCGGCAGCCGCTACAGCTGTTGCTTTACAACAGCACAATCAATTGAATGGTACGAACAGTCAAAATACTCAAGCTATACTTGCTGCTCTTATGCTTCAAAATCTCAATACTCCTAATTAACTTATCAAACAATCTTTAAATGGTCTATCATTTCCATTAGAGAATGCCGTTTCAAATCTCGTGATTTTCCACCTAAACCAG] consensusID : consensus_7875#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 529 fasta sequence [ATGGAGAGTTATGGTGGGCGGCTTATGCTCTTTCACGAGTGGTAACAGGTGTTAGTATGTATGTAAGATCATACACAAGTACTGTAATATATCTAATTGTTATTCAATATTATAAATGTCATGGAGATACATCATAATTCAATGATATTTTTGATATTACAAAGGAATTCAGCATAACCTTCATAAATTCACATGCATAAAACATAAACCATATTTAAAATGTTCACTTTATTTCATAGAGACAATTAAAACTGATTTCTTACGATAATAAACAACTCACTGTACACAAAACAAAATCATTATATAGCCTATCAGCTGTATTTAACCTTTAGCCAGTCATTTTCTCCAATGGTAAACAATTAAAATAAATTCGAAAACATCAATTAAAACACAATTCGTTCACCTAGTTATTAAAACGTTTTATCTAACTATATATGTACACAGACTTACAGACTATTTAAAGATTGTTTGATAAGTTGATTAGGAGTATTGAGATTTTGAAGCATAAGAGCAGCAAGTATAGCTTGAG] [+] EMBL CD067233 [ATGGAGAGTTATGGTGGGCGGCTTATGCTCTTTCACGAGTGGTAACAGGTGTTAGTATGTATGTAAGATCATACACAAGTACTGTAATATATCTAATTGTTATTCAATATTATAAATGTCATGGAGATACATCATAATTCAATGATATTTTTGATATTACAAAGGAATTCAGCATAACCTTCATAAATTCACATGCATAAAACATAAACCATATTTAAAATGTTCACTTTATTTCATAGAGACAATTAAAACTGATTTCTTACGATAATAAACAACTCACTGTACACAAAACAAAATCATTATATAGCCTATCAGCTGTATTTAACCTTTAGCCAGTCATTTTCTCCAATGGTAAACAATTAAAATAAATTCGAAAACATCAATTAAAACACAATTCGTTCACCTAGTTATTAAAACGTTTTATCTAACTATATATGTACACAGACTTACAGACTATTTAAAGATTGTTTGATAAGTTGATTAGGAGTATTGAGATTTTGAAGCATAAGAGCAGCAAGTATAGCTTGAG] consensusID : consensus_7875#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 394 fasta sequence [GCTGCCGCAATTACAGCTGCTGCCGCTGTAGCTGCAATGTCAGGTTCAGGAGTCGTCAATAATCATACTTTAAGTGGACTATGTCATTTACCAAGTTTACATTCCAGTAATTTATCGGGAAACAATTTAATTTTAAGTCAGAATAAGTCATCATTATCACCGTTATCATCATCTACAATATCTACAGTAACAACGACATCTATTCCATCGTTGTCATCGTCAGTCTCATCATCATCATCTGCAGCTCTAGTTAATCTTTTTAAAGCTCAACATCAACAACAGAATTTAGCGGCAGCCGCTACAGCTGTTGCTTTACAACAGCACAATCAATTGAATGGTACGAACAGTCAAAATACTCAAGCTATACTTGCAACTCCACACGCCTCTCGGGTGA] [-] EMBL CD166373 [GCTGCCGCAATTACAGCTGCTGCCGCTGTAGCTGCAATGTCAGGTTCAGGAGTCGTCAATAATCATACTTTAAGTGGACTATGTCATTTACCAAGTTTACATTCCAGTAATTTATCGGGAAACAATTTAATTTTAAGTCAGAATAAGTCATCATTATCACCGTTATCATCATCTACAATATCTACAGTAACAACGACATCTATTCCATCGTTGTCATCGTCAGTCTCATCATCATCATCTGCAGCTCTAGTTAATCTTTTTAAAGCTCAACATCAACAACAGAATTTAGCGGCAGCCGCTACAGCTGTTGCTTTACAACAGCACAATCAATTGAATGGTACGAACAGTCAAAATACTCAAGCTATACTTGCAACTCCACACGCCTCTCGGGTGA] [-] EMBL CD164797 [ GCAATGTCAGGTTCAGGAGCCGTCAATAATCATACTTTAAGTGGACTATGTCATTTACCAAGTTTACATTCCAGTAATTTATCGGGAAACAATTTAATTTTAAGTCAGAATAAGTCATCATTATCACCGTTATCATCATCTACAATATCTACAGTAACAACGACATCTATTCCATCGTTGTCATCGTCAGTCTCATCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7875#0 AAGACAACCGATTTGGAGTTTGATTATACTCACATTTTTAACTTGAATCAACTCGCGAAA 60 consensus_7875#2 ------------------------------------------------------------ consensus_7875#1 ------------------------------------------------------------ consensus_7875#0 CTATCATCTGATGTCACCGGCAATATATATCACACTTCCATAGGCTTCCCATTTTATTAA 120 consensus_7875#2 ------------------------------------------------------------ consensus_7875#1 ------------------------------------------------------------ consensus_7875#0 TATTAGGTTTGTAAGGTAATATATCAGTATTCCATTTTCCTACCTATTCAATTGAAGAAA 180 consensus_7875#2 ------------------------------------------------------------ consensus_7875#1 ------------------------------------------------------------ consensus_7875#0 GAATATAAGGATACCAAACAAAGAAATTGTTTGAAAGGATTCGAAACATATTTTCGATTA 240 consensus_7875#2 ------------------------------------------------------------ consensus_7875#1 ------------------------------------------------------------ consensus_7875#0 CTTGTCTTTTTGAATTTACTTAAATATTTCTATTCAATATAAAAATTTTAAGGTTTTTTT 300 consensus_7875#2 ------------------------------------------------------------ consensus_7875#1 ------------------------------------------------------------ consensus_7875#0 TAATGAACTCTCTTCAGCCTCTAACTTGAACAACCAAAATATTGGATTGAATAGTTACAC 360 consensus_7875#2 ------------------------------------------------------------ consensus_7875#1 --------------------------------------ATGGAGAGTTATGGTGGGCGGC 22 consensus_7875#0 TAATACTTTGGCTTCCAGACCACGGATTAATGGCACATCTGTAGGAACTGGCAATAGTGT 420 consensus_7875#2 ------------------------------------------------------------ consensus_7875#1 TTATGCTCTTTCACGAGTGGTAACAGGTGTTAGTATGTATGTAAGATCATACACAAGT-- 80 consensus_7875#0 TGTTGCTGCCGCAATTTCAGCTGCTACCGCTGTAGCTGCAATGTCAGGTTCAGGAGTCGT 480 consensus_7875#2 ----GCTGCCGCAATTACAGCTGCTGCCGCTGTAGCTGCAATGTCAGGTTCAGGAGTCGT 56 consensus_7875#1 ----ACTGTAATATATCTAATTGTTATT-CAATATTATAAATGTCATGGAGATACATCAT 135 *** * * * ** * * ** ******* * * ** * consensus_7875#0 CAAT-AATCATACTTTAAGTGG-ACTATGTCATTTACCAAGTTTACATTCCAGTAATTTA 538 consensus_7875#2 CAAT-AATCATACTTTAAGTGG-ACTATGTCATTTACCAAGTTTACATTCCAGTAATTTA 114 consensus_7875#1 AATTCAATGATATTTTTGATATTACAAAGGAATTCAGCA----TAACCTTCATAAATTCA 191 * * *** *** *** * ** * * *** * ** ** * ** **** * consensus_7875#0 TCGGGAAACAATTTAATTTTAAGTCAGAATAAGTCATCATTATCACCGTTATCATCATCT 598 consensus_7875#2 TCGGGAAACAATTTAATTTTAAGTCAGAATAAGTCATCATTATCACCGTTATCATCATCT 174 consensus_7875#1 CATGCATAAAACATAAACCATATTTAAAAT--GTTCACTTTATT-TCATAGAGACAATTA 248 * * * ** *** * * * *** ** * **** * * * ** consensus_7875#0 ACAATATCTACAGTAACAACGACATCTATTCCATCGTTGTCATCGTCAGTCTCATCATCA 658 consensus_7875#2 ACAATATCTACAGTAACAACGACATCTATTCCATCGTTGTCATCGTCAGTCTCATCATCA 234 consensus_7875#1 AAACTGATTTC--TTACGATAATAAACAACTCACTGTACACAA-AACAAAATCATTAT-A 304 * * * * * * ** * * * * ** ** ** ** **** ** * consensus_7875#0 TCATCTG-CAGCTCTAGTTAATCTTCTTAAAGCTCAACATCAACAACAGAATTTAGCGGC 717 consensus_7875#2 TCATCTG-CAGCTCTAGTTAATCTTTTTAAAGCTCAACATCAACAACAGAATTTAGCGGC 293 consensus_7875#1 TAGCCTATCAGCTGTATTTAACCTTTAGCCAG-TCATTTTCTCCAATGGTAAACAATTAA 363 * ** ***** ** **** *** ** *** ** *** * * * consensus_7875#0 AGCCGCTACAGCTGTTGCTTTACAACAGCACAATCAATTGAATGGTACGAACAGTCAAAA 777 consensus_7875#2 AGCCGCTACAGCTGTTGCTTTACAACAGCACAATCAATTGAATGGTACGAACAGTCAAAA 353 consensus_7875#1 AATAAATTCGAAAAC--ATCAATTAAAACACAATTCGTTCA-----CCTAGTTATTAAAA 416 * * * * * * * ****** ** * * * * **** consensus_7875#0 TACTCAAGCTATACTTGCTGCTCT-TATGCTTCAAAA---TCTCAATACTCCTAATTAAC 833 consensus_7875#2 TACTCAAGCTATACTTGCAACTCCACACGCCTCTCGG---GTGA---------------- 394 consensus_7875#1 CGTTTTATCTAACTATATATGTACACAGACTTACAGACTATTTAAAGATTGTTTGATAAG 476 * * *** * * * * * consensus_7875#0 TTATCAAACAATCTTTAAATGGTCTATCATTTCCATTAGAGAATGCCGTTTCAAATCTCG 893 consensus_7875#2 ------------------------------------------------------------ consensus_7875#1 TTGATTAGGAGTATTGAGATTTTGAAGCATAAG-AGCAGCAAGTATAGCTTGAG------ 529 consensus_7875#0 TGATTTTCCACCTAAACCAG 913 consensus_7875#2 -------------------- consensus_7875#1 -------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||