These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7891#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 415 fasta sequence [GTTTTTCGAAGCTGATATTACTTACTTCCTTTCGTATGTTACCCCTCGTAGAGCATTATTATTATTACGTGTTACTTATTATTATTAATAGCATAGATCACCGACCGAAATTCTCCAACCAACTCTGTCCTGGGATCTCCTTTGAAGTTGTTTTCAATTGCTAATCATTCTTCTGATGTCTTCTTCCAATTCCAGCGAGTTTCCACAACTTTCAGAGTTTCTCCATCAAGTGTGGTCGGGTTGGTGTTCTCCGTGTTGTATTTCAGGATCTTGATTTTTCCTTTGTGCATGTTAAGACCTACTGCGGCAGATGCTGCTGCTACACTAGTTGTCTTCGTCTGCATTTGTTCGTGTGTATGAGATAGAAGAGCCAGGTCATCTTCCAAGTCCAAATCCTCTAATTGATTCCGAGCTG] [+] EMBL CD164750 [GTTTTTCGAAGCTGATATTACTTACTTCCTTTCATATGTTACCCCTCGTAGAGCATTATTATTATTACGTGTTACTTATTATTATTAATAGCATAGATCACCGACCGAAATTCTCCAACCAACTCTGTCCTGGGATCTCCTTTGAAGTTGTTTTCAATTGCTAATCATTCTTCTGATGTCTTCTTCCAATTCCAGCGAGTTTCCACAACTTTCAGAGTTTCTCCATCAAGTGTGGTCGGGTTGGTGTTCTCCGTGTTGTATTTCAGGATCTTGATTTTTCCTTTGTGCATGTTAAGACCTACTGCGGCAGATGCTGCTGCTACACTAGTTGTCTTCGTCTGCATTTGTTCGTGTGTATGAGATAGAAGAGCCAGGTCATCTTCCAAGCCCAAATCCTCTAATTGATTCCGAGCT ] [+] EMBL CD164701 [GTTTTTCGAAGCTGATATTACTTACTTCCTTTCGTATGTTACCCCTCGTAGAGCATTATTATTATTACGTGTTACTTATTATTATTAATAGCATAGATCACCGACCGAAATTCTCCAACCAACTCTGTCCTGGGATCTCCTTTGAAGTTGTTTTCAATTGCTAATCATTCTTCTGATGTCTTCTTCCAATTCCAGCGAGTTTCCACAACTTTCAGAGTTTCTCCATCAAGTGTGGTCGGGTTGGTGTTCTCCGTGTTGTATTTCAGGATCTTGATTTTTCCTTTGTGCATGTTAAGACCTACTGCGGCAGATGCTGCTGCTACACTAGTTGTCTTCGTCTGCATTTGTTCGTGTGTATGAGATAGAAGAGCCAGGTCATCTTCCAAGTCCAAATCCTCTAATTGATTCCGAGCT ] [+] EMBL CD164698 [GTTTTTCGAAGCTGATATTACTTACTTCCTTTCGTATGTTACCCCTCGTAGAGCATTATTATTATTACGTGTTACTTATTATTATTAATAGCATAGATCACCGACCGAAATTCTCCAACCAACTCTGTCCTGGGATCTCCTTTGAAGTTGTTTTCAATTGCTAATCATTCTTCTGATGTCTTCTTCCAATTCCAGCGAGTTTCCACAACTTTCAGAGTTTCTCCATCAAGTGTGGTCGGGTTGGTGTTCTCCGTGTTGTATTTCAGGATCTTGATTTTTCCTTTGTGCATGTTAAGACCTACTGCGGCAGATGCTGCTGCTACACTAGTTGTCTTCGTCTGCATTTGTTCGTGTGTATGAGATAGAAGAGCCAGGTCATCTTCCAAGTCCAAATCCTCTAATTGATTCCGAGCT ] [-] EMBL CD164745 [ TTTTTCGAAGCTGATATTACTTACTTCCTTTCGTATGTTACCCCTCGTAGAGCATTATTATTATTACGTGTTACTTATTATTATTAATAGCATAGATCACCGACCGAAATTCTCCAACCAACTCTGTCCTGGGATCTCCTTTGAAGTTGTTTTCAATTGCTAATCATTCTTCTGATGTCTTCTTCCAATTCCAGCGAGTTTCCACAACTTTCAGAGTTTCTCCATCAAGTGTGGTCGGGTTGGTGTTCTCCGTGTTGTATTTCAGGATCTTGATTTTTCCTTTGTGCATGTTAAGACCTACTGCGGCAGATGCTGCTGCTACACTAGTTGTCTTCGTCTGCATTTGTTCGTGTGTATGAGATAGAAGAGCCAGGTCATCTTCCAAGTCCAAATCCTCTAATTGATTCCGAGCTG] consensusID : consensus_7891#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 272 fasta sequence [TGTTCACTGATGATGCTGCCCCGATAGGTACGTGAATGATTCCACATCTTCCGGAGCTTATCCATCAAGCGTGGTTGGGTTGGTGTTCTCTGTATTGTATTTAAGGATTTTGGTTTTTCCTTTGTGTATGTTGAGGCCTACTGACGTCGAGGCTGCTGCTACACTAGTTGTCTTCATCTGCATTTGTTCGTGTGTTTGAGATAGAAGGGCCAGGTCATCAGAGAAGCCCAAATCTTCTAATTGATTCCGAGCTGTCCGCTGTATCCCGTGCT] [-] EMBL CD192349 [TGTTCACTGATGATGCTGCCCCGATAGGTACGTGAATGATTCCACATCTTCCGGAGCTTATCCATCAAGCGTGGTTGGGTTGGTGTTCTCTGTATTGTATTTAAGGATTTTGGTTTTTCCTTTGTGTATGTTGAGGCCTACTGACGTCGAGGCTGCTGCTACACTAGTTGTCTTCATCTGCATTTGTTCGTGTGTTTGAGATAGAAGGGCCAGGTCATCAGAGAAGCCCAAATCTTCTAATTGATTCCGAGCTGTCCGCTGTATCCCGTGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7891#0 GTTTTTCGAAGCTGATATTACTTACTTCCTTTCGTATGTTACCCCTCGTAGAGCATTATT 60 consensus_7891#1 ------------------------------------------------------------ consensus_7891#0 ATTATTACGTGTTACTTATTATTATTAATAGCATAGATCACCGACCGAAATTCTCCAACC 120 consensus_7891#1 ------------------------------------------------------------ consensus_7891#0 AACTCTGTCCTGGGATCTCCTTTGAAGTTGTTTTCAATTGCTAATCATTCTTCTGATGTC 180 consensus_7891#1 -----------------------------------------TGTTCACTGATGATGCTGC 19 * *** * * * consensus_7891#0 TTCTTCCAATTCCAGCGAGTTTCCACAACTTTCAGAGTTTCTCCATCAAGTGTGGTCGGG 240 consensus_7891#1 CCCGATAGGTACGTGAATGATTCCACATCTTCCGGAGCTTATCCATCAAGCGTGGTTGGG 79 * * * * * ******* *** * *** ** ********* ***** *** consensus_7891#0 TTGGTGTTCTCCGTGTTGTATTTCAGGATCTTGATTTTTCCTTTGTGCATGTTAAGACCT 300 consensus_7891#1 TTGGTGTTCTCTGTATTGTATTTAAGGATTTTGGTTTTTCCTTTGTGTATGTTGAGGCCT 139 *********** ** ******** ***** *** ************* ***** ** *** consensus_7891#0 ACTGCGGCAGATGCTGCTGCTACACTAGTTGTCTTCGTCTGCATTTGTTCGTGTGTATGA 360 consensus_7891#1 ACTGACGTCGAGGCTGCTGCTACACTAGTTGTCTTCATCTGCATTTGTTCGTGTGTTTGA 199 **** * ** ************************ ******************* *** consensus_7891#0 GATAGAAGAGCCAGGTCATCTTCCAAGTCCAAATCCTCTAATTGATTCCGAGCTG----- 415 consensus_7891#1 GATAGAAGGGCCAGGTCATCAGAGAAGCCCAAATCTTCTAATTGATTCCGAGCTGTCCGC 259 ******** *********** *** ******* ******************* consensus_7891#0 ------------- consensus_7891#1 TGTATCCCGTGCT 272 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||