These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7901#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1614 fasta sequence [GGGCCATATTCGGCCGAGGCACATACTCGCCTCCGAGTATCCTTTTAGACACCTATGAAGTCATGAAAATTTGTTTTTTGATGTTCTCTGTAGTCTCATGGTTGATCCATTACCGTCTACAAGTCAAACACAGCCCAGTAAGCCTTTTTCAGTGGATATTAGAGATTTCTTTGAAAGGATAATGAGACCCCGGCACTTAACGTCCTGGAATCAAGTTGAAGAAGCCATAGATCTTTTGCAGAAAGTTTGTTCCATAAATATTGGTTAACTTACATAGATGACTTACACACACTATGTAGTTAGAGAAAGCAAATTAAATAAAGAAGAGCCTGGACTTCATTACCACTATGTTGTATATGTGTGCACGTTTGGCCACAAAAGAAAGCCGGAAGGTACTGGGCAAAGAGTTAAAGGGTAATTAGTTGTTATTATACTAATAGCCTTTTAGATCGAAATTCACTGGTTGTAAATCCATGTTTAGAATCAGATACGAGCATAACCGATACATAA--TACCGGCTTCTAAAACAGTACACAATCACCCGTGCGACAGCGAATATTTAACAAACGACCCTTGGTCCAGAAAGCTCAGCCAAGACCAGTTGCAAGTTTTAATCCCGATGATCACCGTTAGTTCAGAACCAAATGAAATAATTAAATATGTTGGTGAAACCTTCAACAAAACCATCACGCTCAATGATTACAGAAATCTCCGGCACAAAGTTGCTAAAAGCAAG-TTTCTTATAGTTAAATATCGTTAGGTTGTAGAACTCANAATGACGGTCTNTAC-AAGGTAGACTGTTCAACAACCTTATGAATGTGACGATCATGTCACTCAAATTTCTAGAGTATGCTNTACTAAATTATGTATGTAAATTGTAAGTGGTTTCTTGAGGTAATTGTTATCGAATTCACATATACAAACAGAAAAGTAAAGAGGTTCCACTTACTAACAATTATTTGTTTCAATTAGTTATTACACATAACAATGGTTACGTATATCCAGTTGCTTTTGCTCAATCTAAACATGATAAAAACGTACGGATAAATCTAGGCTCACCATGACAGAAGTAACAACTAAAGCATTCCCAATATACTTTGTTGAATGTATAAACCAAGGAATATTAATGATACATTATANGACTGGACGTTCCTCTAGAAAAGTTGTTTTCTACGGAATGACATTGTTTACCTCATACCCAGCCCTCCTTCATCAAGGCTTGGGACTGGCAATTTCATCTCTGTGCTAATGGGGTATAGCAACTTGAATTGATGTACATACGTACTAGGTTTTTCATTGTAAACTGACTGACTGGATTAACACTCTTGATCAGGGGTCTTTTTCCATTGTGTATAAAGTTCGAATGAGTTATTCTCTCAGCTGATTCCAAACGTGGATTTAAAACTGGTGTCGTTCGTCCTAACCTTCGGCAGCATACACACCAGCTTATCACACAAATACAGCATGATAATATCGTAGCTCATGTTTTACTTCATTCACTTTGCTTTCTTTACTACAGAAAGCACGGATTTTATCTGTTGACAAGTATATTTGGTATAAGTTAAATTATTTTCTCAAGCTAATCCTTGGCTCACTAATATTTTCGCTTCCCATTT] [+] EMBL CD081493 [GGGCCATATTCGGCCGAGGCACATACTCGCCTCCGAGTATCCTTTTAGACACCTATGAAGTCATGAAAATTTGTTTTTTGATGTTCTCTGTAGTCTCATGGTTGATCCATTACCGTCTACAAGTCAAACACAGCCCAGTAAGCCTTTTTCAGTGGATATTAGAGATTTCTTTGAAAGGATAATGAGACCCCGGCACTTAACGTCCTGGAATCAAGTTGAAGAAGCCATAGATCTTTTGCAGAAAGTTTGTTCCATAAATATTGGTTAACTTACATAGATGACTTACACACACTATGTAGTTAGAGAAAGCAAATTAAATAAAGAAGAGCCTGGACTTCATTACCACTATGTTGTATATGTGTGCACGTTTGGCCACAAAAGAAAGCCGGAAGGTACTGGGCAAAGAGTTAAAGGGTAATTAGTTGTTATTATACTAATAGCCTTTTAGATCGAAATTCACTGGTTGTAAATCCATGTTTAGAATCAGATACGAGCATAACCGATACATAA TACCGGCTTCTAAAACAGTACACAATCACCCGTGCGACAGCGAATATTTAACAAACGACCCTTGGTCCAGAAAGCTCAGCCAAGACCAGTTGCAAGTTTTAATCCCGATGATCACCGTTAGTTCAGAACCAAATGAAATAATTAAATATGTTGGTGAAACCTTCAACAAAACCATCACGCTCAATGATTACAGAAATCTCCGGCACAAAGTTGCTAAAAGCAAG TTTCTTATAGTTAAATATCGTTAGGTTGTAGAACTCANAATGACGGTCTNTAC AAGGTAGACTGTTCAACAACCTTATGAATGTGACGATCATGTCACTCAAATTTCTAGAGTATGCTNTACTAAATTATGTATGTAAATTGTAAGTGG ] [+] EMBL CD081862 [ aaggATAANNTACCGGCTTCTAAAACAGTACACAATCACCCGTGCGACAGCGAATATTTAACAAACGACCCTTGGTCCAGAAAGCTCAGCCAAGACCAGTTGCAAGTTTTAATCCCGATGATCACCGTTAGTTCAGAACCAAATGAAATAATTAAATATGTTGGTGAAACCTTCAACAAAACCATCACGCTCAATGATTACAGAAATCTCCGGCACAAAGTTGCTAAAAGCAAGTTTTCTTATAGTTAAATATCGTTAGGTTGTAGAACTCAAAATGACGGTCT TACAAAGGTAGACTGTTCAACAACCTTATGAATGTGACGATCATGTCACTCAAATTTCTAGAGTATGCTTTACTAAATTATGTATGTAAATTGTAAGTGGTTTCTTGAGGTAATTGTTATCGAATTCACATATACAAACAGAAAAGTAAAGAGGTTCCACTTACTAACAATTATTTGTTTCAATTAGTTATTACACATAACAATGGTTACGTATATCCAGTTGCTTTTGCTCAATCTAAACATGATAAAAACGTACGGATAAATCTAGGCTCACCATGACAGAAGTAACAACTAAAGCATTCCCAATATACTTTGTTGAATGTATAAACCAAGGAATATTAATGATACATTATANGACTGGACGTTCCTCTAGAAAAGTTGTTTTCTACGGAATGAC ] [-] EMBL CD075575 [ GGCTCACCATGACAGAAGTAACAACTAAAGCATTCCCAATATACTTTGTTGAATGTATAAACCAAGGAATATTAATGATACATTATA GACTGGACGTTCCTCTAGAAAAGTTGTTTTCTACGGAATGACATTGTTTACCTCATACCCAGCCCTCCTTCATCAAGGCTTGGGACTGGCAATTTCATCTCTGTGCTAATGGGGTATAGCAACTTGAATTGATGTACATACGTACTAGGTTTTTCATTGTAAACTGACTGACTGGATTAACACTCTTGATCAGGGGTCTTTTTCCATTGTGTATAAAGTTCGAATGAGTTATTCTCTCAGCTGATTCCAAACGTGGATTTAAAACTGGTGTCGTTCGTCCTAACCTTCGGCAGCATACACACCAGCTTATCACACAAATACAGCATGATAATATCGTAGCTCATGTTTTACTTCATTCACTTTGCTTTCTTTACTACAGAAAGCACGGATTTTATCTGTTGACAAGTATATTTGGTATAAGTTAAATTATTTTCTCAAGCTAATCCTTGGCTCACTAATATTTTCGCTTCCCATTT] [-] EMBL CD075317 [ TCAAGGCTTGGGACTGGCAATTTCATCTCTGTGCTAATGGGGTATAGCAACTTGAATTGATGTACATACGTACTAGGTTTTTCATTGTAAACTGACTGACTGGATTAACACTCTTGATCAGGGGTCTTTTTCCATTGTGTATAAAGTTCGAATGAGTTATTCTCTCAGCTGATTCCAAACGTGGATTTAAAACTGGTGTCGTTCGTCCTAACCTTCGGCAGCATACACACCAGCTTATCACACAAATACAGCATGATAATATCGTAGCTCATGTTTTACTTCATTCACTTTGCTTTCTTTACTACAGAAAGCACGGATTTTATCTGTTGACAAGTATATTTGGTATAAGTTAAATTATTTTCTCAAGCTAATCCTTGGCTCACTAATATTTTCGCTTCCCATTT] consensusID : consensus_7901#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence [TTCTTTAGATGTCCACATACTCGCCTCCGAGTATCCTTTTAGACACCTATGAAGTCATGAAAATTTGTTTTTTGATGTTCTCTGTAGTCTCATGGTTGATCCATTACCGTCTACAAGTCAAACACAGCCCAGTAAGCCTTTTTCAGTGGATATTAGAGATTTCTTTGAAAGGATAATGAGACCCCGGCACTTAACGTCCTGGAATCAAGTTGAAGAAGCCATAGATCTTTTGCAGAAAGTTTGTTCCATAAATATTGGTTAACTTACATAGATGACTTACACACACTATGTAGTTAGAGAAAGCAAATTAAATAAAGAAGAGCCTGGACTTCATTACCACTATGTTGTATATGTGTGCACGTTTGGCCACAAAAGAAAGCCGGAAGGTACTGGGCAAAGAGTTAAAGGATCGAAATTCACTGGTTGTAAATCCATGTTTAGAATCAGATACGAGCATAACCGATA] [-] EMBL CD202131 [TTCTTTAGATGTCCACATACTCGCCTCCGAGTATCCTTTTAGACACCTATGAAGTCATGAAAATTTGTTTTTTGATGTTCTCTGTAGTCTCATGGTTGATCCATTACCGTCTACAAGTCAAACACAGCCCAGTAAGCCTTTTTCAGTGGATATTAGAGATTTCTTTGAAAGGATAATGAGACCCCGGCACTTAACGTCCTGGAATCAAGTTGAAGAAGCCATAGATCTTTTGCAGAAAGTTTGTTCCATAAATATTGGTTAACTTACATAGATGACTTACACACACTATGTAGTTAGAGAAAGCAAATTAAATAAAGAAGAGCCTGGACTTCATTACCACTATGTTGTATATGTGTGCACGTTTGGCCACAAAAGAAAGCCGGAAGGTACTGGGCAAAGAGTTAAAGGATCGAAATTCACTGGTTGTAAATCCATGTTTAGAATCAGATACGAGCATAACCGATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7901#0 GGGCCATATTCGGCCGAGGCACATACTCGCCTCCGAGTATCCTTTTAGACACCTATGAAG 60 consensus_7901#1 -----TTCTTTAGATGTC-CACATACTCGCCTCCGAGTATCCTTTTAGACACCTATGAAG 54 * ** * * ***************************************** consensus_7901#0 TCATGAAAATTTGTTTTTTGATGTTCTCTGTAGTCTCATGGTTGATCCATTACCGTCTAC 120 consensus_7901#1 TCATGAAAATTTGTTTTTTGATGTTCTCTGTAGTCTCATGGTTGATCCATTACCGTCTAC 114 ************************************************************ consensus_7901#0 AAGTCAAACACAGCCCAGTAAGCCTTTTTCAGTGGATATTAGAGATTTCTTTGAAAGGAT 180 consensus_7901#1 AAGTCAAACACAGCCCAGTAAGCCTTTTTCAGTGGATATTAGAGATTTCTTTGAAAGGAT 174 ************************************************************ consensus_7901#0 AATGAGACCCCGGCACTTAACGTCCTGGAATCAAGTTGAAGAAGCCATAGATCTTTTGCA 240 consensus_7901#1 AATGAGACCCCGGCACTTAACGTCCTGGAATCAAGTTGAAGAAGCCATAGATCTTTTGCA 234 ************************************************************ consensus_7901#0 GAAAGTTTGTTCCATAAATATTGGTTAACTTACATAGATGACTTACACACACTATGTAGT 300 consensus_7901#1 GAAAGTTTGTTCCATAAATATTGGTTAACTTACATAGATGACTTACACACACTATGTAGT 294 ************************************************************ consensus_7901#0 TAGAGAAAGCAAATTAAATAAAGAAGAGCCTGGACTTCATTACCACTATGTTGTATATGT 360 consensus_7901#1 TAGAGAAAGCAAATTAAATAAAGAAGAGCCTGGACTTCATTACCACTATGTTGTATATGT 354 ************************************************************ consensus_7901#0 GTGCACGTTTGGCCACAAAAGAAAGCCGGAAGGTACTGGGCAAAGAGTTAAAGGGTAATT 420 consensus_7901#1 GTGCACGTTTGGCCACAAAAGAAAGCCGGAAGGTACTGGGCAAAGAGTTAAAGG------ 408 ****************************************************** consensus_7901#0 AGTTGTTATTATACTAATAGCCTTTTAGATCGAAATTCACTGGTTGTAAATCCATGTTTA 480 consensus_7901#1 ----------------------------ATCGAAATTCACTGGTTGTAAATCCATGTTTA 440 ******************************** consensus_7901#0 GAATCAGATACGAGCATAACCGATACATAATACCGGCTTCTAAAACAGTACACAATCACC 540 consensus_7901#1 GAATCAGATACGAGCATAACCGATA----------------------------------- 465 ************************* consensus_7901#0 CGTGCGACAGCGAATATTTAACAAACGACCCTTGGTCCAGAAAGCTCAGCCAAGACCAGT 600 consensus_7901#1 ------------------------------------------------------------ consensus_7901#0 TGCAAGTTTTAATCCCGATGATCACCGTTAGTTCAGAACCAAATGAAATAATTAAATATG 660 consensus_7901#1 ------------------------------------------------------------ consensus_7901#0 TTGGTGAAACCTTCAACAAAACCATCACGCTCAATGATTACAGAAATCTCCGGCACAAAG 720 consensus_7901#1 ------------------------------------------------------------ consensus_7901#0 TTGCTAAAAGCAAGTTTCTTATAGTTAAATATCGTTAGGTTGTAGAACTCANAATGACGG 780 consensus_7901#1 ------------------------------------------------------------ consensus_7901#0 TCTNTACAAGGTAGACTGTTCAACAACCTTATGAATGTGACGATCATGTCACTCAAATTT 840 consensus_7901#1 ------------------------------------------------------------ consensus_7901#0 CTAGAGTATGCTNTACTAAATTATGTATGTAAATTGTAAGTGGTTTCTTGAGGTAATTGT 900 consensus_7901#1 ------------------------------------------------------------ consensus_7901#0 TATCGAATTCACATATACAAACAGAAAAGTAAAGAGGTTCCACTTACTAACAATTATTTG 960 consensus_7901#1 ------------------------------------------------------------ consensus_7901#0 TTTCAATTAGTTATTACACATAACAATGGTTACGTATATCCAGTTGCTTTTGCTCAATCT 1020 consensus_7901#1 ------------------------------------------------------------ consensus_7901#0 AAACATGATAAAAACGTACGGATAAATCTAGGCTCACCATGACAGAAGTAACAACTAAAG 1080 consensus_7901#1 ------------------------------------------------------------ consensus_7901#0 CATTCCCAATATACTTTGTTGAATGTATAAACCAAGGAATATTAATGATACATTATANGA 1140 consensus_7901#1 ------------------------------------------------------------ consensus_7901#0 CTGGACGTTCCTCTAGAAAAGTTGTTTTCTACGGAATGACATTGTTTACCTCATACCCAG 1200 consensus_7901#1 ------------------------------------------------------------ consensus_7901#0 CCCTCCTTCATCAAGGCTTGGGACTGGCAATTTCATCTCTGTGCTAATGGGGTATAGCAA 1260 consensus_7901#1 ------------------------------------------------------------ consensus_7901#0 CTTGAATTGATGTACATACGTACTAGGTTTTTCATTGTAAACTGACTGACTGGATTAACA 1320 consensus_7901#1 ------------------------------------------------------------ consensus_7901#0 CTCTTGATCAGGGGTCTTTTTCCATTGTGTATAAAGTTCGAATGAGTTATTCTCTCAGCT 1380 consensus_7901#1 ------------------------------------------------------------ consensus_7901#0 GATTCCAAACGTGGATTTAAAACTGGTGTCGTTCGTCCTAACCTTCGGCAGCATACACAC 1440 consensus_7901#1 ------------------------------------------------------------ consensus_7901#0 CAGCTTATCACACAAATACAGCATGATAATATCGTAGCTCATGTTTTACTTCATTCACTT 1500 consensus_7901#1 ------------------------------------------------------------ consensus_7901#0 TGCTTTCTTTACTACAGAAAGCACGGATTTTATCTGTTGACAAGTATATTTGGTATAAGT 1560 consensus_7901#1 ------------------------------------------------------------ consensus_7901#0 TAAATTATTTTCTCAAGCTAATCCTTGGCTCACTAATATTTTCGCTTCCCATTT 1614 consensus_7901#1 ------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||