These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8095#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 834 fasta sequence [ACGACATCCATAATAACCTTAGTAACTTTATAGGTATCATTACCAAGTTTTGATTTGATAATTTTGAATCAATTGAGCATTGGGTAGATTGTTATAAATAAATTGATATATTTGTAATATCCCAATGAGTAGAAAAATTAGATTTTCTGACGTTTCGTGACTCAGTGTAGGCCACTTCTTCGGAGAATAAATAAACAACCAGTAACTTTAGATTGATTCTAATTAGCTAACTTCAATATCTTTGTTCTGTCATATTCCAACTTCTCTTTGTAGGCATATAGCCGAATAATAGTTGAGGTAGTTTGATAAGTGTTACATCAGCTTTTTACATCCATACCAGTTTCTTCATTAGGAAGTACAATCTTAATACGACCTTTCGAGTGAGCAAAATTGCGGGACTCTATTCAATTCAATGCATCTTGACTGAGGCCAAACTTGGTGTGTTAGTCGTGATCTAGTTGAATTTGTATGTTTGGCTGCTAACTGTTTTCTCTTTCATTGTTGGTTAGTTTAGCGTTGATTCACTCTGAAGCACCCATCCCACAAACGTCTTTGGACACGCATTCATTATTGAGGCTNTGCTTCTGAGTACTTATGTTTAAAATACCGTTTGTCCTCACCAAAGTTTTTATGAATTTTAGATACGTGCATGTGTTTGGAATGATCGTCATTTAGAATTGTATACCTGCGGAGCTGATGGAAATCTGTTTACATGGCCCATTTTTCCTCTTTCAAGCAACAATGTGATTGATGATGATCAATTTTAATTTATACATCTTAGTATTTTGTAAATAAACATGTATAGTGATGATTGAAATCTTATAATTAACCATT] [+] EMBL CD079886 [ACGACATCCATAATAACCTTAGTAACTTTATAGGTATCATTACCAAGTTTTGATTTGATAATTTTGAATCAATTGAGCATTGGGTAGATTGTTATAAATAAATTGATATATTTGTAATATCCCAATGAGTAGAAAAATTAGATTTTCTGACGTTTCGTGACTCAGTGTAGGCCACTTCTTCGGAGAATAAATAAACAACCAGTAACTTTAGATTGATTCTAATTAGCTAACTTCAATATCTTTGTTCTGTCATATTCCAACTTCTCTTTGTAGGCATATAGCCGAATAATAGTTGAGGTAGTTTGATAAGTGTTACATCAGCTTTTTACATCCATACCAGTTTCTTCATTAGGAAGTACAATCTTAATACGACCTTTCGAGTGAGCAAAATTGCGGGACTCTATTCAATTCAATGCATCTTGACTGAGGCCAAACTTGGTGTGTTAGTCGTGATCTAGTTGAATTTGTATGTTTGGCTGCTAACTGTTTTCTCTTTCATTGTTGGTTAGTTTAGCGTTGATTCACTCTGAAGCACCCATCCCACAAACGTCTTTGGACACGCATTCATTATTGAGGCTNTGCTTCTGAGTACTTATGTTTAAAATACCGTTTGTCCTCACCAAAGTTTTTATGAATTTTAGATACGTGCATGTGTTTGGAATGATCGTCATTTAGAATTGTATACCTGCGGAGCTGATGGAAATCTGT ] [-] EMBL CD069519 [ ATTTGATAATTTTGAATCAATTGAGCATTGGGTAGATTGTTATAAATAAATTGATATATTTGTAATATCCCAATGAGTAGAAAAATTAGATTTTCTGACGTTTCGTGACTCAGTGTAGGCCACTTCTTCGGAGAATAAATAAACAACCAGTAACTTTAGATTGATTCTAATTAGCTAACTTCAATATCTTTGTTCTGTCATATTCCAACTTCTCTTTGTAGGCATATAGCCGAATAATAGTTGAGGTAGTTTGATAAGTGTTACATCAGCTTTTTACATCCATACCAGTTTCTTCATTAGGAAGTACAATCTTAATACGACCTTTCGAGTGAGCAAAATTGCGGGACTCTATTCAATTCAATGCATCTTGACTGAGGCCAAACTTGGTGTGTTAGTCGTGATCTAGTTGAATTTGTATGTTTGGCTGCTAACTGTTTTCTCTTTCATTGTTGGTTAGTTTAGCGTTGATTCACTCTGAAGCACCCATCCCACAAACGT ] [-] EMBL CD074083 [ ATATTCCAACTTCTCTTTGTAGGCATATAGCCGAATAATAGTTGAGGTAGTTTGATAAGTGTTACATCAGCTTTTTACATCCATACCAGTTTTTTCATTAGGAAGTACAATCTTAATACGACCTTTCGAGTGAGCAAAATTGCGGGACTTTATTCAATTCAATGCATCTTGACTGAGGCCAAACTTGGTGTGTTAGTCGTGATCTAGTTGAATTTGTATGTTTGGCTGCTAACTGTTTTCTCTTTCATTGTTGGTTAGTTTAGCGTTGATTCACTTTGAAGCACCCATCCCACAAACGTCTTTGGACACGCATTCATTATTGAGGCTTTGCTTTTGAGTACTTATGTTTAAAATACCGTTTGTCCTCACCAAAGTTTTTATGAATTTTAGATACGTGCATGTGTTTGGAATGATCGTCATTTAGAATTGTATACCTGCGGAGCTGATGGAAATCTGTTTACATGGCCCATTTTTCCTCTTTCAAGCAACAATGTGATTGATGATGATCAATTTTAATTTATACATCTTAGTATTTTGTAAATAAACATGTATAGTGATGATTGAAATCTTATAATTAACCATT] consensusID : consensus_8095#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence [GAATGATAATGAAATTACGTCTTGGAAACTCTACTGATCATTCATTGTTGTCATTTTGTTTTTGTTTTTTGCTTTTTCTCGCTTTTCTTCCCTTTAAAATTGTCCTCCCTAACCATGTTTTACAATAGGACTCATTTATTTTGTGTTAAATTTCATAATACTACTGATATAGAAATCAATAGTTGAATAATGCTATAAAAGAATTTGTCCATTACGAAACATTGATCGATTATTTGAATAGGTGTTATGATCTGTTGAACGTTTAAAAGGTTAGTGGGATCAAATCTATGCTATTGATTTAGTTACCATATTTCAGATGTAGACTTTTCATTAAATAGATAATGATTGACGTGAAAACCAAGCACTTTATGATTAAGATATGAATATAATTATTATATCCTGAAGAGGATTATGAATGGTAACTTTTGAGGACTATTTATGGACTAATATGATATGTATATTACCTATTGTATAATTGTTAAGTAACTCAATTATTCACATTCACGTCCCTCTTATTATAAGCTNTATTTTGACCCATAGACTATTATTATACGATTTACCACNTC] [+] EMBL CD189639 [GAATGATAATGAAATTACGTCTTGGAAACTCTACTGATCATTCATTGTTGTCATTTTGTTTTTGTTTTTTGCTTTTTCTCGCTTTTCTTCCCTTTAAAATTGTCCTCCCTAACCATGTTTTACAATAGGACTCATTTATTTTGTGTTAAATTTCATAATACTACTGATATAGAAATCAATAGTTGAATAATGCTATAAAAGAATTTGTCCATTACGAAACATTGATCGATTATTTGAATAGGTGTTATGATCTGTTGAACGTTTAAAAGGTTAGTGGGATCAAATCTATGCTATTGATTTAGTTACCATATTTCAGATGTAGACTTTTCATTAAATAGATAATGATTGACGTGAAAACCAAGCACTTTATGATTAAGATATGAATATAATTATTATATCCTGAAGAGGATTATGAATGGTAACTTTTGAGGACTATTTATGGACTAATATGATATGTATATTACCTATTGTATAATTGTTAAGTAACTCAATTATTCACATTCACGTCCCTCTTATTATAAGCTNTATTTTGACCCATAGACTATTATTATACGATTTACCACNTC] consensusID : consensus_8095#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence [AACTACTCATATTCATGTCCCTCTTATTATAAGCTTTATTTTGACCTATAGACTATTATTATACGACTTACCGTTCTTGAGTTATCCTCAGTCTATCAATTACTATCTCCCTTATTCACAGCCACGTTTGGTTAAATCACGTACAAATGTTGTTTTCTATTTTATGGTAAGATGTGATCTGTCTGGTTGGTATATAAACTCAGTAATGTTTGAAATAAATAATTCATATCTCGGAGGCTGTTATTGGGGTTCTGGATTTAATAGACAAAGCTAGGCGGGAAGCAAGACCGATAGAGACTCGAGACTGCTCGTACGGGTTTTGTGTGTCATTGGTACAATCAATAATTCACTTTATTCTAATTGGCGGCATCATCACGTCATATATTAATTGGGGAACCAATCCACAAGATATAACAATTATATTGTTACTAGTACTAATTAACAAC] [+] EMBL CD115229 [AACTACTCATATTCATGTCCCTCTTATTATAAGCTTTATTTTGACCTATAGACTATTATTATACGACTTACCGTTCTTGAGTTATCCTCAGTCTATCAATTACTATCTCCCTTATTCACAGCCACGTTTGGTTAAATCACGTACAAATGTTGTTTTCTATTTTATGGTAAGATGTGATCTGTCTGGTTGGTATATAAACTCAGTAATGTTTGAAATAAATAATTCATATCTCGGAGGCTGTTATTGGGGTTCTGGATTTAATAGACAAAGCTAGGCGGGAAGCAAGACCGATAGAGACTCGAGACTGCTCGTACGGGTTTTGTGTGTCATTGGTACAATCAATAATTCACTTTATTCTAATTGGCGGCATCATCACGTCATATATTAATTGGGGAACCAATCCACAAGATATAACAATTATATTGTTACTAGTACTAATTAACAAC] consensusID : consensus_8095#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 348 fasta sequence [AACCGCGTCATTCTTGAATGTAAGATGCTCGGAATGACTCCTGCGACTTCGCATACGGTCCGAATGGCATAATAATGAGTTGCTACTGACTTAACACTCTCAGGTATTATTAGATCGTCTGCATCCTGAAAATTATTATTGCCATCTCTTCGACCATATTGTCTTGGACCCTGACGATCTGATCCATCCTGATTTTCGAAGTCTCAATTTGAATTGAATGGCATCTCACGACCTCGACCAAACATTCCTCTTCCTCTGCCTCTCCCACGTCCTCTAGGCTCAAAGCTTGACCCTCTGNGAGCATTNCAATCACTCACTGAATCTTGAAGTGCTTCTGTCGGAGCTATT] [+] EMBL CD198322 [AACCGCGTCATTCTTGAATGTAAGATGCTCGGAATGACTCCTGCGACTTCGCATACGGTCCGAATGGCATAATAATGAGTTGCTACTGACTTAACACTCTCAGGTATTATTAGATCGTCTGCATCCTGAAAATTATTATTGCCATCTCTTCGACCATATTGTCTTGGACCCTGACGATCTGATCCATCCTGATTTTCGAAGTCTCAATTTGAATTGAATGGCATCTCACGACCTCGACCAAACATTCCTCTTCCTCTGCCTCTCCCACGTCCTCTAGGCTCAAAGCTTGACCCTCTGNGAGCATTNCAATCACTCACTGAATCTTGAAGTGCTTCTGTCGGAGCTATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8095#1 ------------------------------------------------------------ consensus_8095#2 ------------------------------------------------------------ consensus_8095#0 ACGACATCCATAATAACCTTAGTAACTTTATAGGTATCATTACCAAGTTTTGATTTGATA 60 consensus_8095#3 ------------------------------------------------------------ consensus_8095#1 ---------GAATGATAATGAAATTACGTCTTGGAAACTCTACTGATCATTCATTGTTGT 51 consensus_8095#2 ------------------------------------------------------------ consensus_8095#0 ATTTTGAATCAATTGAGCATTGGGTAGATTGTTATAAATAAATTGATATATTTGTAATAT 120 consensus_8095#3 -------------------------------------------------AACCGCGTCAT 11 consensus_8095#1 CATTTTGTTTTTGTTTTTTGCTTTTTCTCGCTTTTCTTCCCTTTAAAATTGTCCTCCCTA 111 consensus_8095#2 -------------AACTACTCATATTCATGTCCCTCTTATTATAAGCTTTATTTTGACCT 47 consensus_8095#0 CCCAATGAGTAGAAAAATTAGATTTTCTGACGTTTCGTGAC-TCAGTGTAGGCCACTTCT 179 consensus_8095#3 TCTTGAATGTAAGATGCTCGGAATGACTCCTGCGACTTCGCATACGGTCCGAATGGCATA 71 * * * * consensus_8095#1 ACCATGTTTTACAATAGGACTCATTTATTTTGTGTTAAATTTCATAATACTACTGATATA 171 consensus_8095#2 ATAGACTATTATTATACGACTTACCGTTCTTGAGTTA----TCCTCAGTCTATCAATTAC 103 consensus_8095#0 TCGGAGAATAAATAAACAAC-CAGTAACTTTAGATTGATTCTAATTAGCTAACTTCAATA 238 consensus_8095#3 ATAATGAGTTGCTAC-TGACTTAACACTCTCAGGTA-----TTATTAGATCGTCTGCATC 125 * * ** * * * * * * consensus_8095#1 GAAATCAATAGTTGAATAATGCTATAAAAGAATTTGTCCATTACGAAACATTGATCGAT- 230 consensus_8095#2 TATCTCCCTTATT---CACAGCCACGTTTGGTTAAATCACGTAC-AAATGTTG-TTTTC- 157 consensus_8095#0 TCTTTGTTCTGTCATATTCCAACTTCTCTTTGTAGGCATATAGCCGAATAATAGTTGAGG 298 consensus_8095#3 C-TGAAAATTATT----ATTGCCATCTCTTCGACCATATTGTCTTGGACCCTG-ACGATC 179 * * * consensus_8095#1 TATTTGAATAGGTGTTATGATCTGTTGAAC--GTTTAAAA-GGTTAGTGGGATCAAATCT 287 consensus_8095#2 TATTTTATGGTAAGATGTGATCTGTCTGGTTGGTATATAA-ACTCAGTAATGTTTGAAAT 216 consensus_8095#0 TAGTTTGATAAGTGTTAC-ATCAGCTTTTTACATCCATACCAGTTTCTTCATTAGGAAGT 357 consensus_8095#3 TGATCCATCCTGATTTTCGAAGTCTCAATTTGAATTGAATGGCATCTCACGACCTCGACC 239 * * * * * consensus_8095#1 ATGCTATTGATTTAGTTACC---ATATTTCAGATGTAGACTTTTCATTAAATA-GATAAT 343 consensus_8095#2 AAATAATTCAT---ATCTCG---GAGGCTGTTATTGGGGTTCTGGATTTAATA-GACAAA 269 consensus_8095#0 ACAATCTTAATACGACCTTTCGAGTGAGCAAAATTGCGGGACTCTATTCAATTCAATGCA 417 consensus_8095#3 AAACATTCCTCT---TCCTC----TGCCTCTCCCACGTCCTCTAGGCTCAAAG-CTTGAC 291 * * * * ** consensus_8095#1 GATTGACGTGAAAACCAAGCACTTTATGATTAAGAT--ATGAATATAATTATTATATCCT 401 consensus_8095#2 GCTAGGCG-GGAAGCAAGAC------CGATAGAGAC--TCGAGACTGCTCGTACGGGTTT 320 consensus_8095#0 TCTTGACT--GAGGCCAAACTTGGTGTGTTAGTCGTGATCTAGTTGAATTTGTATGTTTG 475 consensus_8095#3 CCTCTGNGAGCATTNCAATCAC----TCACTGAATC--TTGAAGTGCTTCTGTCGGAGCT 345 * * * * * * consensus_8095#1 GAAGAGGATTATGAATGGTAACTTTTGAGGACTATTTATGGACTAATATGATATGTATAT 461 consensus_8095#2 TGTG-----TGTCATTGGTA-CAATCAATAATTCACTTTATTCTAAT-TGGCGGCATCAT 373 consensus_8095#0 GCTGCTAACTGTTTTCTCTT-TCATTGTTGGTTAGTTTAGCGTTGATTCACTCTGAAGCA 534 consensus_8095#3 ATT--------------------------------------------------------- 348 consensus_8095#1 TACCTATTGTATAATTGTTAAGTAACTCAATTATTCACATTCACGTCCCTCTTATTATAA 521 consensus_8095#2 CAC--GTCATATATTAATTGGGGAACCAATCCACAAGATATAACAATTATATTGTTACTA 431 consensus_8095#0 CCCATCCCACAAACGTCTTTGGACACGCATTCATT---ATTGAGGCTNTGCTTCTGAGTA 591 consensus_8095#3 ------------------------------------------------------------ consensus_8095#1 GCTNTATTTTGAC--CCATAGACTATTATTATACGATTTACCACNTC------------- 566 consensus_8095#2 GTACTAATTAACA--AC------------------------------------------- 446 consensus_8095#0 CTTATGTTTAAAATACCGTTTGTCCTCACCAAAGTTTTTATGAATTTTAGATACGTGCAT 651 consensus_8095#3 ------------------------------------------------------------ consensus_8095#1 ------------------------------------------------------------ consensus_8095#2 ------------------------------------------------------------ consensus_8095#0 GTGTTTGGAATGATCGTCATTTAGAATTGTATACCTGCGGAGCTGATGGAAATCTGTTTA 711 consensus_8095#3 ------------------------------------------------------------ consensus_8095#1 ------------------------------------------------------------ consensus_8095#2 ------------------------------------------------------------ consensus_8095#0 CATGGCCCATTTTTCCTCTTTCAAGCAACAATGTGATTGATGATGATCAATTTTAATTTA 771 consensus_8095#3 ------------------------------------------------------------ consensus_8095#1 ------------------------------------------------------------ consensus_8095#2 ------------------------------------------------------------ consensus_8095#0 TACATCTTAGTATTTTGTAAATAAACATGTATAGTGATGATTGAAATCTTATAATTAACC 831 consensus_8095#3 ------------------------------------------------------------ consensus_8095#1 --- consensus_8095#2 --- consensus_8095#0 ATT 834 consensus_8095#3 --- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||