These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8237#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 956 fasta sequence [CAGTGGTAAAGTTAACAATGATTTGTAGCTTTGACGCCGAAATCAGTACGTTTCAACCTAATAATTGCGAAAGACCGATTAAAAAAGCAAGTAAGTGGTTGGAAATACGTTTATCACAAGATTACCAGTTATTTTGTACTAAACTCACAGAACACCACTTTACCTGTTGCGCGCTGAAATGACATTATCTGGTAAGATTTTTCTACTGATAGACAGAATATTAATCTAAGGTTGCTTCGGCGATTATGATCCTAAGTTAACCATTACTAGGTACTGGGAGCTCATTCTTCTAAGAACATATACACTACAAAACATAAAAAGTGAAATACGCCCGGGTGTCTCAACCAGCAACTTTTTAACGTGTTACCCATTTGATATATTGTGTAAACTAGTACTTGATTGTTGTAATTA-GATATTTT-AAGGAAGGATTTTGAACAGAGGCATATGGTGTTAAGTAAAGATTAAGGATGATGATACTTTAACTTCGAATTATTATGGCTGTCATTTTTCATGGGTATTGACACGGTTATAAAAGATTGAGACCTTTCAACTTTGAGGGAGACTTACCCAAGCAAGCAAGAAAGGATAACAAAGGCGGACTTTTGGGCGAATCCTTAAGAGAATTGGGTGTAA-ATATAAGCGATTATGCACCTACAAATCGTC-TTTTCCCCAGGTCCGGGGAAAATAGTG-CCTATT-TTCCCTAGAATGTACCCATAGAGGAAAAATTTATCGAACTTGACACTTTCAGTTTGCCAAAATTTACATTAACTCGTCCACCTTTCCCCTAAACTGGCATCAAATTGTCTACCTTACCCCTAAAATTAACACCACATTGTTTATTCTCACCGATCTCATGAGGACAAAATTTGTAGCCGAATTGTTGGGAAGTTCTGTTGTTAATCTTAGGGGAGATGTGATTAGAAACACATANACTTTCATGGGCTTTGTGGAAAACT] [+] EMBL CD124253 [CAGTGGTAAAGTTAACAATGATTTGTAGCTTTGACGCCGAAATCAGTACGTTTCAACCTAATAATTGCGAAAGACCGATTAAAAAAGCAAGTAAGTGGTTGGAAATACGTTTATCACAAGATTACCAGTTATTTTGTACTAAACTCACAGAACACCACTTTACCTGTTGCGCGCTGAAATGACATTATCTGGTAAGATTTTTCTACTGATAGACAGAATATTAATCTAAGGTTGCTTCGGCGATTATGATCCTAAGTTAACCATTACTAGGTACTGGGAGCTCATTCTTCTAAGAACATATACACTACAAAACATAAAAAGTGAAATACGCCCGGGTGTCTCAACCAGCAACTTTTTAACGTGTTACCCATTTGATATATTGTGTAAACTAGTACTTGATTGTTGTAATTA GATATTTT AAGGAAGGATTTTGAACAGAGGCATATGGTGTTAAGTAAAGATTAAGGATGATGATACTTTAACTTCGAATTATTATGGCTGTCATTNTTCATGGGTATTGACACGGTTATAAAAGATTGAGACCTTTCAACTNTGAGGGAGACTTANCCCAGC AGCAAGAAAGGATTACANAGGCGGACTTTTGGGCGAATCCTTAAGAGAATTGNGTGTAANNTAT AGCGATTATGCACCTANCAATCGTCTTTTTCCCCA GTNCGGGGAAAATAGTGCCCTATTNTTCCt ] [-] EMBL CD180844 [ CTAAACTCACAGAACACCACTTTACCTGTTGCGCGCTGAAATGACATTATCTGGTAAGATTTTTCTACTGATAGACAGAATATTAATCTAAGGTTGCTTCGGCGATTATGATCCTAAGTTAACCATTACTAGGTACTGGGAGCTCATTCTTCTAAGAACATATACACTACAAAACATAAAAAGTGAAATACGCCCGGGTGTCTCAACCAGCAACTTTTTAACGTGTTACCCATTTGATATATTGTGTAAACTAGTACTTGATTGTTGTAATTA GATATTTT AAGGAAGGATTTTGAACAGAGGCATATGGTGTTAAGTAAAGATTAAGGATGATGATACTTTAACTTCGAATTATTATGGCTGTCATTTTTCATGGGTGTTGACACGGTTATAAAAGATTGAGACCTTTCAACTTTGAGGGAGACTTACCCAAGCAAGCAAGAAAGGATAACAAAGGCGGACTTTTGGGCGAATCCTTAAGAGAATTGGGTGTAA ATATAAGCGATTATGCACCCACAAATCGT ] [+] EMBL CD188583 [ cATTACGATATTTTCAGGGAAGGATTTTGAACAGAGGCATATGGTGTTAAGTAAAGATTAAGGATGATGATACTTTAACTTCGAATTATTATGGCCGTCTATTTACATGGGTATTGACACGGTTATAAAAGATTGAGACCTTTCAACTTTGAGGGAGACTTACCCAAGCAAGCAAGAAAGGATAACAAAGGCGGACTTTTGGGCGAATCCTTAAGAGAATTGGGTGTAA ATATAAGCGATTATGCACCTACAAATCGTC TTTTCCCCAGGTCCGGGGAAAATAGTG CCTATT TTCCCTAGAATGTACCCATAGAGGAAAAATTT ] [+] EMBL CD153198 [ ATTTT AAGGAAGGATTTTGAACAGAGGCATATGGTGTTAAGTAAAGATTAAGGATGATGATACTTTAACTTCGAATTATTATGGCTGTCATTTTTCATGGGTATTGACACGGTTATAAAAGATTGAGACCTTTCAACTTTGAGGGAGACTTACCCAAGCAAGCAAGAAAGGATAACAAAGGCGGACTTTTGGGCGAATCCTTAAGAGAATTGGGTGTAA ATATAAGCGATTATGCACCTACAAATCGTC TTTTCCCCAGGTCCGGGGAAAATAGTG CCTATT TTCCCTAGAATGTACCCATAGAGGAAAAACTTATCGAACTTGACACTTTCAGTTTGCCAAAATTTACATTAACTCGTCCACCTTTCCCCTAAACTGGCATCAAATTGTCTACCTTACCCCTAAAATTAACACCACATTGTTTATTCTCACCGATCTCATGAGGACAAAATTTGTAGCCGAATTGTTGGGAAGTTCTGTTGTTAATCTTAGGGGAGATGTGATTAGAAACACATANACTTTCATGGGCTTTGTGGAAAACT] consensusID : consensus_8237#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 638 fasta sequence [AATATATTTGGAAGCACTCGGGGAATAAAACGAAAGATATTGGAATTGTATTATGTACATAGGAGAAGATTCACAAAGGTTTAATCAGTTTATTTTACTCGTCGACTTTCAATTTTATCCAGAGAGAAATATAACCTGCTAAGAAGGCAGAAGTATCCACAAGGCACAATGGTTGCACTGTAATCTTTTAAGGCGACTTGACAATACGTTGTGAGCAGCATAAGGGCCATAATTCCAAGACAAGCGAATTTCTTGAAGGATACATGTCCAACAACTAACGTAGTTCCTAGCAATAGTTCGAAAACTCCCATAGATTGCATGTAGATCTGAGGACTAGGTATCACTCCAATATGCCGTAGTGGTGATACTTCAGTGAAATTCTTGAATGTCTTTAACATTTCCCGATAAAGTGTTGTATTCAAGCGCACTGTCTTTACTATACCAGGCAGTATGAACAGCAGTCCGAGAACTACAGTTGACACATGGGTAGCAAGATGTGACGCCATTCTGCTGTCCAAGCAAGCAAGAAAGGATAACAAAGGCGGACTTTTGGGCGAATCAAATCGTCTTTTCCCCAGGTCCGGGGAAAATAGTGCCTATTTTCCCTAGAATGTACCCATAGAGGAAAAATTTATCGA] [+] EMBL CD074846 [AATATATTTGGAAGCACTCGGGGAATAAAACGAAAGATATTGGAATTGTATTATGTACATAGGAGAAGATTCACAAAGGTTTAATCAGTTTATTTTACTCGTCGACTTTCAATTTTATCCAGAGAGAAATATAACCTGCTAAGAAGGCAGAAGTATCCACAAGGCACAATGGTTGCACTGTAATCTTTTAAGGCGACTTGACAATACGTTGTGAGCAGCATAAGGGCCATAATTCCAAGACAAGCGAATTTCTTGAAGGATACATGTCCAACAACTAACGTAGTTCCTAGCAATAGTTCGAAAACTCCCATAGATTGCATGTAGATCTGAGGACTAGGTATCACTCCAATATGCCGTAGTGGTGATACTTCAGTGAAATTCTTGAATGTCTTTAACATTTCCCGATAAAGTGTTGTATTCAAGCGCACTGTCTTTACTATACCAGGCAGTATGAACAGCAGTCCGAGAACTACAGTTGACACATGGGTAGCAAGATGTGACGCCATTCTGCTGTCCAAGCAAGCAAGAAAGGATAACAAAGGCGGACTTTTGGGCGAATCAAATCGTCTTTTCCCCAGGTCCGGGGAAAATAGTGCCTATTTTCCCTAGAATGTACCCATAGAGGAAAAATTTATCGA] consensusID : consensus_8237#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence [CGCACTGTCTTTACTATACCAGGCAGTATGAACAGCAGTCCGAGAACTACAGTTGACACATGGGTAGCAAGATGTGACGCCATTCTGCTGTCCAAGCAAGCAAGAAAGGATAACAAAGGCGGACTTTTGGGCGAATCAAATCGTCTTTTCCNCNNNNNNNNNNNNNNNNNTGCCTATTTTCCCTAGAATGTACCCATAGAGGAAAAATTTATCGAACTTGACACTTTCAGTTTGCCAAAATTTACATTAACTCGTCCACCCCTAAAATTAACACCACATTGTTTATTCTCACCGATCTCATGAGGACAAAATGTAGAATCTTAGGGGAGATGTGATTAGAAACACATAAACTTTCATGGGCTTTGTGGAAAACTACAGAATTCTTAACAACCATGGAGAGAAGCCGAGCCTGCCCAATCTCCCTACTTTGAGAAAATATTGGGNNNNNNNNNNNNNNNNNNNNNNNNTTTCCCATATTCAAGGAAATTTGGGTGCCACTTTCCGAAAACGGTCAAAACTTTCTTAAAAATAGAAAGTTTGGGTGGAGATTAAAAGGATACGAAGATCCATCCTTCATTGTTATTAGCTAATTAGTTGAGGCACATAAGGTGAACTTGTTAGTTCAAATTTGA] [-] EMBL CD081020 [CGCACTGTCTTTACTATACCAGGCAGTATGAACAGCAGTCCGAGAACTACAGTTGACACATGGGTAGCAAGATGTGACGCCATTCTGCTGTCCAAGCAAGCAAGAAAGGATAACAAAGGCGGACTTTTGGGCGAATCAAATCGTCTTTTCCNCNNNNNNNNNNNNNNNNNTGCCTATTTTCCCTAGAATGTACCCATAGAGGAAAAATTTATCGAACTTGACACTTTCAGTTTGCCAAAATTTACATTAACTCGTCCACCCCTAAAATTAACACCACATTGTTTATTCTCACCGATCTCATGAGGACAAAATGTAGAATCTTAGGGGAGATGTGATTAGAAACACATAAACTTTCATGGGCTTTGTGGAAAACTACAGAATTCTTAACAACCATGGAGAGAAGCCGAGCCTGCCCAATCTCCCTACTTTGAGAAAATATTGGGNNNNNNNNNNNNNNNNNNNNNNNNTTTCCCATATTCAAGGAAATTTGGGTGCCACTTTCCGAAAACGGTCAAAACTTTCTTAAAAATAGAAAGTTTGGGTGGAGATTAAAAGGATACGAAGATCCATCCTTCATTGTTATTAGCTAATTAGTTGAGGCACATAAGGTGAACTTGTTAGTTCAAATTTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8237#0 CAGTGGTAAAGTTAACAATGATTTGTAGCTTTGACGCCGAAATCAGTACGTTTCAACCTA 60 consensus_8237#2 ------------------------------------------------------------ consensus_8237#1 ------------------------------------------------------------ consensus_8237#0 ATAATTGCGAAAGACCGATTAAAAAAGCAAGTAAGTGGTTGGAAATACGTTTATCACAAG 120 consensus_8237#2 -------------------------------------------CGCACTGTCTTTACTA- 16 consensus_8237#1 -------------AATATATTTGGAAGCACTCGGGGAATAAAACGAAAGAT-ATTGGAAT 46 * * * * consensus_8237#0 ATTACCAGTTATTTTGTACTAAACTCACAGAACACCACTTTACCTGTT--GCGCGCTGAA 178 consensus_8237#2 --TACCAGGCAGTATGAACAGCAGTCCGAGAACTACAGTTGACACATG--GGTAGCAAGA 72 consensus_8237#1 TGTATTATGTACATAGGAGAAGATTCACAAAGGTTTAATCAGTTTATTTTACTCGTCGAC 106 ** * * * * * ** * * * * * * consensus_8237#0 -AT-GACATTATCTGGTAAGATTTTTCTACTGATA-GACAGAATATTAATCTAAGGTTGC 235 consensus_8237#2 TGT-GACGCCATTCTGC----TGTCCAAGCAAGCAAGAAAGGATAACAAAGGCGGACT-T 126 consensus_8237#1 TTTCAATTTTATCCAGAGAGAAATATAACCTGCTAAGAAGGCAGAAGTATCCACAA---- 162 * * ** * * * * ** * * * * consensus_8237#0 TTCGGCGATTATGATCCTAAGTTAACCATTACTAGGTACTGGGA-GCTCATTCTTCTAAG 294 consensus_8237#2 TTGGGCGAATCAAATCGTCTTTTCCNCNNNNNNNNNNNNNNNNNTGCCTATTTTCCCTAG 186 consensus_8237#1 ---GGC-ACAATGGTTGCACTGTAATCTTTTAAGGCGACTTGACAATACGTTGT--GAGC 216 *** * * * * ** * consensus_8237#0 AACATATACACTACAAAACATAAAAAGTGAAATACGCCCGGGTGTCTCAACCAGCAACTT 354 consensus_8237#2 AATGTACCCAT------AGAGGAAAAATTTATCGAACTTGACACTTTCAGTTTGCCAAAA 240 consensus_8237#1 AGCATAAGGGC----------CATAATTCCAAGACAAGCGAATTTCTTGAAGGATACATG 266 * ** * ** * * * * * consensus_8237#0 TTTAACGTGTTACCCATTTGATATATTGTGTAAACTAGTACTTGATTGTTGTAATTAGAT 414 consensus_8237#2 TTTA---CATTAACTCGTCCACCCCTAAAATTAACACCACATTGTTTATTCTCACC-GAT 296 consensus_8237#1 TCCAACAACTAACGTAGTTCCTAGCAATAGTTCGAAAACTCCCATAGATTGCATGTAGAT 326 * * * * * * ** *** consensus_8237#0 ATTTTAAGGA-AGGATTTTGAACA--GAGGCATATGGTGTTAAGTAAAGATTAAGGATGA 471 consensus_8237#2 CTCATGAGGACAAAATGTAGAATCTTAGGGGAGATGTGATTAGAAACACATAAACTTTCA 356 consensus_8237#1 CT---GAGGACTAGGTATCACTCCAATATGCCGTAGTGGTGATACTTCAGTGAAATTCTT 383 * **** * * * * * * * ** consensus_8237#0 TGATACTTTAACTTCGAATTATTATGGCTGTCATTTTTCATGGGTATTGACACGGTTATA 531 consensus_8237#2 TGG-GCTTTG----TGGAAAACTACAGA----ATTCTTAACAACCATGGAGAGAAGCCGA 407 consensus_8237#1 GAATGTCTTTA--ACATTTCCCGATAAAGTGTTGTATTCAAGCGCACTGTCTTTACTATA 441 ** * * ** * * * * consensus_8237#0 AAAGATTGAGACCTTTCAACTTTGAGGGA-GACTTACCCAAGCAAGCAAGAAAGGATAAC 590 consensus_8237#2 GCCTGCCCA-ATCTCCCTACTTTGAGAAA-ATATTGGGNNNNNNNNNNNNNNNNNNNNNN 465 consensus_8237#1 CCAGGCAGTATGAACAGCAGTCCGAGAACTACAGTTGACACATGGGTAGCAAGATGTGAC 501 * * *** * consensus_8237#0 AAAGGCGGACTTTTGGGCGAATCCTTAAGAGAATTGGGTGTAAATATAAGCGATTATGCA 650 consensus_8237#2 NNTTTCCCATATTCAAGGAAATTTGGGTGCCACTTTCCGAAAACGGTCAAAACTTTCTTA 525 consensus_8237#1 GCCATTCTGCTGTCCAAGCAAGCAAGAAAGGA-----TAACAAAGGCGGACTTTTGGGCG 556 * ** * ** ** consensus_8237#0 CCTACAAATCGTCTTTTCCCCAGGTCCGGGGAAAATAGTGCCTATTTTCCCTAGAATGTA 710 consensus_8237#2 AAAATAGAAAGTTTGGGTGGAGATTAAAAGGATACGAAGATCCATCCTTCATTGTTATTA 585 consensus_8237#1 AAT-CAAATCGTCTTTTCCCCAGGTCCGGGGAAAATAGTGCCTATTTTCCCTAGAATGTA 615 * * ** * * *** * * * ** * * * * ** consensus_8237#0 CCCA--TAGAGGAAAAATTTAT--CGAACTTGACACTTTCAGTTTGCCAAAATTTACATT 766 consensus_8237#2 GCTAATTAGTTGAGGCACATAAGGTGAACTTGTTAGTTCAAATTTGA------------- 632 consensus_8237#1 CCCA--TAGAGGAAAAATTTAT--CGA--------------------------------- 638 * * *** ** * ** ** consensus_8237#0 AACTCGTCCACCTTTCCCCTAAACTGGCATCAAATTGTCTACCTTACCCCTAAAATTAAC 826 consensus_8237#2 ------------------------------------------------------------ consensus_8237#1 ------------------------------------------------------------ consensus_8237#0 ACCACATTGTTTATTCTCACCGATCTCATGAGGACAAAATTTGTAGCCGAATTGTTGGGA 886 consensus_8237#2 ------------------------------------------------------------ consensus_8237#1 ------------------------------------------------------------ consensus_8237#0 AGTTCTGTTGTTAATCTTAGGGGAGATGTGATTAGAAACACATANACTTTCATGGGCTTT 946 consensus_8237#2 ------------------------------------------------------------ consensus_8237#1 ------------------------------------------------------------ consensus_8237#0 GTGGAAAACT 956 consensus_8237#2 ---------- consensus_8237#1 ---------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||