These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8429#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1138 fasta sequence [CTCGCAGCCAAAAATTCGGCACGAGGCATTCGGTAAAACATTTCCCTGAAAAAAATTGGGTTTTTGTGTGCAAGCTGCGGAACTGTCGTTGCCGATGACCAGGTCTTGACAGGTACTTTAAAAGTCCAACAACTAAGCTAATGTCAAACGTTTAATTGGACCCTCAAAATTTTCAAATGGATAGGCTTGGTAATACTATCTAAATTCATGGGAAGACTTGTTGGTCGTCCAGCTACTTAACCAACCGAAACCACGAATAGTTTGAGGCCATTCGAAAATAACAGCGACTCTGGGTGTGCGTTGAAGTCTGTAACCACCCACACATTCGTGCCAAATATACCTTTGTTTTAGAAGTCTGTGTCCGCATATCTTTTCTGAGTTACTGCAGAATGACACCGGAGTCCCCGAATTAGGTTTGAGTGACTAGCTTGATAGTGACGCAAAATTAGCGTAGCCTCTAATAAGTCCTCGTCTTGTGTTCTGTACTAGTCAACTTGTCGGCATCTACATTTATTACTGTTCCGCGAAACTGTTTTTATAAGTAGACGTTTAAAGTCACTCTTGATGTCTCAACCGACCTCTTAATTAGGTATTAATTATAATAATCGCAAATCGCCATTGCTACTTTTGCCTATAATAAATTCACAATAAATCAGCTGGAAGATGTTGACTATTCATTGCCTTATATTCGTCGTATCGTTATAGTCCCTGATAATCTAAAGATATCTCGCAGTAAAGTGGTTAATTAGCAACACTAAGGTTCTGGCCGGCAAATTTCTAACATGCAAGTATGTATTTAGCTATGCATTGCCGAGGAAGGATAGAGCTTTTTCCTGTGCTTTCCTTAATCTCTCTGCAAGCTTGTGGGTCCGAAATCGTCTGATGATGATGCTGAACGATCATGAAGTTGATTCATTGCATCGTATCTCGCTTCTAAGGCGTTTAACGGTTCCACACATTTCCAAGCTGGATTACTGTTGTTCATATTACAATGTTATATTAACAAGTTATAAACGACAATTGTTTTTGTCAGAAGGCTAAGACGCCTCGTCATTTATTGTCAATCTCGTATTCGCTGAAGTTTCGAATTAATATTTCATTTATTGGGTTAATTATTTATCTGGAATTCAAATAAACA] [+] EMBL CD079391 [CTCGCAGCCAAAAATTCGGCACGAGGCATTCGGTAAAACATTTCCCTGAAAAAAATTGGGTTTTTGTGTGCAAGCTGCGGAACTGTCGTTGCCGATGACCAGGTCTTGACAGGTACTTTAAAAGTCCAACAACTAAGCTAATGTCAAACGTTTAATTGGACCCTCAAAATTTTCAAATGGATAGGCTTGGTAATACTATCTAAATTCATGGGAAGACTTGTTGGTCGTCCAGCTACTTAACCAACCGAAACCACGAATAGTTTGAGGCCATTCGAAAATAACAGCGACTCTGGGTGTGCGTTGAAGTCTGTAACCACCCACACATTCGTGCCAAATATACCTTTGTTTTAGAAGTCTGTGTCCGCATATCTTTTCTGAGTTACTGCAGAATGACACCGGAGTCCCCGAATTAGGTTTGAGTGACTAGCTTGATAGTGACGCAAAATTAGCGTAGCCTCTAATAAGTCCTCGTCTTGTGTTCTGTACTAGTCAACTTGTCGGCATCTACATTTATTACTGTTCCGCGAAACTGTTTTTATAAGTAGACGTTTAAAGTCACTCTTGATGTCTCAACCGACCTCTTAATTAGGTATTAATTATAATAATCGCANATCGCCATTGCTACTTTTGCCTATAATANATTCACAATAAATCAGCTGGAAGATGTTGACTATTCATTGCCTTATATTCGTCGTATCGTTATAGTCCCTGATA ] [+] EMBL CD192238 [ CCTGAAAAAAATTGGGTTTTTATGTGCAAGCTGCGGATCTGTCGTTGCCGATGACCAGGTCTTGACAGGTACTTTAAAAGTCCAACAACTAAGCTAATGTCAAACGTTTAATTGGACCCTCAAAATTTACAAATGGATAGGCTTGGTAATACTATCTAAATTCATGGGAAGACTTGTTGGTCGTCCAGCTACTTAACCAACCGAAACCACGAATAGTTTGAGGCCATTCGAAAATAACAGCGACTCTGGGTGTGCGTTGAAGTCTGTAACCACCCACACATTTGTGCCAAATATACCTTTGTTTTAGAAGTCTGTGCCCGCATATCTTTTCTGAGTTACTGCAGAATGACACCGGAGTCCCCGAATTAGGTTTGAGTGACTAGCTTGATAGTGACGCANAATTAGCGTAGCCTCTAATAAGTCCTCGCCTTGTGTTCTGTACTAGTCAACTTGTCGGCATCTACATTTATTACTGTTCCGCGAAACTGTTTTTATAAGTAGACGTTTAA ] [+] EMBL AI975955 [ TGGGAATACTATCTAAATTCATGGGAAGACTTGTTGGTCGGCCAGCTACTTAACCAACCGAAACCACGAATAGTTTGAGGCCATTCGAAAATAACAGCGACTCTGGGTGTGCGTTGAAGTCTGTAACCACCCACACATTTGTGCCAAATATACCTTTGTTTTAGAAGTCTGTGCCCGCATATCTTTTCTGAGTTACTGCAGAATGACACCGGAGTCCCCGAATTAGGTTTGAGTGACTAGCTTGATAGTGACGCAAAATTAGCGTAGCCTCTAATAAGTCCTCGCCTTGCGTTCTGTACTAGTCAACTTGTCGGCATCTACATTTATTACTGTTCCGCGAAACTGTTTTTATAAGTAGACGTTTAAAGTCACTCTTGATGTCTCAACCGACCTCTTAATTAGGTATTAATTATAATAATCGCAAATCGCCATTGCTACTTTTGCCTATAATAAATTCACAATAAATCAGCTGGAAGATGTTGATTATTCATTGCCTTATATTCGGCGTATCGGTATAGTCCCTGATAAT ] [-] EMBL CD127812 [ TCTAAATTCATGGGAAGACTTGTTGGTCGTCCAGCTACTTAACCAACCGAAACCACGAATAGTTTGAGGCCATTCGAAAATAACAGCGACTCTGGGTGTGCGTTGAAGTCTGTAACCACCCACACATTCGTGCCAAATATACCTTTGTTTTAGAAGTCTGTGTCCGCATATCTTTTCTGAGTTACTGCAGAATGACACCGGAGTCCCCGAATTAGGTTTGAGTGACTAGCTTGATAGTGACGCAAAATTAGCGTAGCCTCTAATAAGTCCTCGTCTTGTGTTCTGTACTAGTCAACTTGTCGGCATCTACATTTATTACTGTTCCGCGAAACTGTTTTTATAAGTAGACGTTTAAAGTCACTCTT ] [-] EMBL CD073666 [ CTCGTCTTGTGTTCTGTACTAGTCAACTTGTCGGCATCTACATTTATTACTGTTCCGCGAAACTGTTTTTATAAGTAGACGTTTAAAGTCACTCTTGATGTCTCAACCGACCTCTTAATTAGGTATTAATTATAATAATCGCAAATCGCCATTGCTACTTTTGCCTATAATAAATTCACAATAAATCAGCTGGAAGATGTTGACTATTCATTGCCTTATATTCGTCGTATCGTTATAGTCCCTGATAATCTAAAGATATCTCGCAGTAAAGTGGTTAATTAGCAACACTAAGGTTCTGGCCGGCAAATTTCTAACATGCAAGTATGTATTTAGCTATGCATTGCCGAGGAAGGATAGAGCTTTTTCCTGTGCTTTCCTTAATCTCTCTGCAAGCTTGTGGGTCCGAAATCGTCTGATGATGATGCTGAACGATCATGAAGTTGATTCATTGCATCGTATCTCGCTTCTAAGGCGTTTAACGGTTCCACACATTTCCAAGCTGGATTACTGTTGTTCATATTACAATGTTATATTAACAAGTTATAAACGACAATTGTTTTTGTCAGAAGGCTAAGACGCCTCGTCATTTATTGTCAATCTCGTATTCGCTGAAGTTTCGAATTAATATTTCATTTATTGGGTTAATTATTTATCTGGAATTCAAATAAACA] consensusID : consensus_8429#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 508 fasta sequence [CCGACCTCTTAATTAGGTATTAATTATAATAATCGCAAATCGCCATTGCTACTTTTGCCTATAAGGCAATGAATAGTCCCTGATAATCTAAAGATATCTCGCAGTAAAGTGGTTAATTAGCAACACTAAGGTTCTGGCCGGCAAATGTCTAACATGCAAGTATGTATTTAGCTATGCATTGCCGAGGAAGGATAGAGCTTTTTCCTGTGCTTTCCTTAATCTCTCTGCAAGCTTGTGGGTCCGAAATCGTCTGATGATGATGCTGAACGATCATGAAGTTGATTCATTGCATCGTATCTCGCTTCTAAGGCGTTTAACGGTTCCACACATTTCCAAGCTGGATTACTGTTGTTCATATTACAATGTTATATTAACAAGTTATAAACGACAATTGTTTTTGTCAGAAGGCTAAGACGCCTCGTCATTTATTGTCAATCTCGTATTCGCTGAAGTTTCGAATTAATATTTCATTTATTGTATTAATTATTTATCTGGACTTCAAATAAAC] [+] EMBL CD079159 [CCGACCTCTTAATTAGGTATTAATTATAATAATCGCAAATCGCCATTGCTACTTTTGCCTATAAGGCAATGAATAGTCCCTGATAATCTAAAGATATCTCGCAGTAAAGTGGTTAATTAGCAACACTAAGGTTCTGGCCGGCAAATGTCTAACATGCAAGTATGTATTTAGCTATGCATTGCCGAGGAAGGATAGAGCTTTTTCCTGTGCTTTCCTTAATCTCTCTGCAAGCTTGTGGGTCCGAAATCGTCTGATGATGATGCTGAACGATCATGAAGTTGATTCATTGCATCGTATCTCGCTTCTAAGGCGTTTAACGGTTCCACACATTTCCAAGCTGGATTACTGTTGTTCATATTACAATGTTATATTAACAAGTTATAAACGACAATTGTTTTTGTCAGAAGGCTAAGACGCCTCGTCATTTATTGTCAATCTCGTATTCGCTGAAGTTTCGAATTAATATTTCATTTATTGTATTAATTATTTATCTGGACTTCAAATAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8429#0 CTCGCAGCCAAAAATTCGGCACGAGGCATTCGGTAAAACATTTCCCTGAAAAAAATTGGG 60 consensus_8429#1 ------------------------------------------------------------ consensus_8429#0 TTTTTGTGTGCAAGCTGCGGAACTGTCGTTGCCGATGACCAGGTCTTGACAGGTACTTTA 120 consensus_8429#1 ------------------------------------------------------------ consensus_8429#0 AAAGTCCAACAACTAAGCTAATGTCAAACGTTTAATTGGACCCTCAAAATTTTCAAATGG 180 consensus_8429#1 ------------------------------------------------------------ consensus_8429#0 ATAGGCTTGGTAATACTATCTAAATTCATGGGAAGACTTGTTGGTCGTCCAGCTACTTAA 240 consensus_8429#1 ------------------------------------------------------------ consensus_8429#0 CCAACCGAAACCACGAATAGTTTGAGGCCATTCGAAAATAACAGCGACTCTGGGTGTGCG 300 consensus_8429#1 ------------------------------------------------------------ consensus_8429#0 TTGAAGTCTGTAACCACCCACACATTCGTGCCAAATATACCTTTGTTTTAGAAGTCTGTG 360 consensus_8429#1 ------------------------------------------------------------ consensus_8429#0 TCCGCATATCTTTTCTGAGTTACTGCAGAATGACACCGGAGTCCCCGAATTAGGTTTGAG 420 consensus_8429#1 ------------------------------------------------------------ consensus_8429#0 TGACTAGCTTGATAGTGACGCAAAATTAGCGTAGCCTCTAATAAGTCCTCGTCTTGTGTT 480 consensus_8429#1 ------------------------------------------------------------ consensus_8429#0 CTGTACTAGTCAACTTGTCGGCATCTACATTTATTACTGTTCCGCGAAACTGTTTTTATA 540 consensus_8429#1 ------------------------------------------------------------ consensus_8429#0 AGTAGACGTTTAAAGTCACTCTTGATGTCTCAACCGACCTCTTAATTAGGTATTAATTAT 600 consensus_8429#1 ---------------------------------CCGACCTCTTAATTAGGTATTAATTAT 27 *************************** consensus_8429#0 AATAATCGCAAATCGCCATTGCTACTTTTGCCTATAATAAATTCACAATAAATCAGCTGG 660 consensus_8429#1 AATAATCGCAAATCGCCATTGCTACTTTTGCCTATAAGG------CAATGAAT------- 74 ************************************* **** *** consensus_8429#0 AAGATGTTGACTATTCATTGCCTTATATTCGTCGTATCGTTATAGTCCCTGATAATCTAA 720 consensus_8429#1 -------------------------------------------AGTCCCTGATAATCTAA 91 ***************** consensus_8429#0 AGATATCTCGCAGTAAAGTGGTTAATTAGCAACACTAAGGTTCTGGCCGGCAAATTTCTA 780 consensus_8429#1 AGATATCTCGCAGTAAAGTGGTTAATTAGCAACACTAAGGTTCTGGCCGGCAAATGTCTA 151 ******************************************************* **** consensus_8429#0 ACATGCAAGTATGTATTTAGCTATGCATTGCCGAGGAAGGATAGAGCTTTTTCCTGTGCT 840 consensus_8429#1 ACATGCAAGTATGTATTTAGCTATGCATTGCCGAGGAAGGATAGAGCTTTTTCCTGTGCT 211 ************************************************************ consensus_8429#0 TTCCTTAATCTCTCTGCAAGCTTGTGGGTCCGAAATCGTCTGATGATGATGCTGAACGAT 900 consensus_8429#1 TTCCTTAATCTCTCTGCAAGCTTGTGGGTCCGAAATCGTCTGATGATGATGCTGAACGAT 271 ************************************************************ consensus_8429#0 CATGAAGTTGATTCATTGCATCGTATCTCGCTTCTAAGGCGTTTAACGGTTCCACACATT 960 consensus_8429#1 CATGAAGTTGATTCATTGCATCGTATCTCGCTTCTAAGGCGTTTAACGGTTCCACACATT 331 ************************************************************ consensus_8429#0 TCCAAGCTGGATTACTGTTGTTCATATTACAATGTTATATTAACAAGTTATAAACGACAA 1020 consensus_8429#1 TCCAAGCTGGATTACTGTTGTTCATATTACAATGTTATATTAACAAGTTATAAACGACAA 391 ************************************************************ consensus_8429#0 TTGTTTTTGTCAGAAGGCTAAGACGCCTCGTCATTTATTGTCAATCTCGTATTCGCTGAA 1080 consensus_8429#1 TTGTTTTTGTCAGAAGGCTAAGACGCCTCGTCATTTATTGTCAATCTCGTATTCGCTGAA 451 ************************************************************ consensus_8429#0 GTTTCGAATTAATATTTCATTTATTGGGTTAATTATTTATCTGGAATTCAAATAAACA 1138 consensus_8429#1 GTTTCGAATTAATATTTCATTTATTGTATTAATTATTTATCTGGACTTCAAATAAAC- 508 ************************** ***************** *********** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||