These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8574#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 939 fasta sequence [TGGGGAGCTTCTTTTTATCTGCCCGGTCTCATCATGATGGTTGGGGCATTGGTTGTCTACTTGACAGTTATAGAGCATCCTAACATGTTGGTTTATAACTCGCCTATTTCAGACAAAACAGGTACTCAAATTCCAATGTCAGGAAGCATATATGGGGAAAACATCGACTGCGAAAGGTCGGATAAGGATGGTTTAAGGCCTTTAATATCGAATACTGAGGCCACTCGACCAATTAGTTTCATTAAAGCTATTCTATTGCCAAGTGTGTTTACCTACTCACTCTTATTATTCTTTACGAAACTTGTCTCATATACATTTCTTTATTGGTTACCAAACTACTTAACGATTGTTGAACATGTATCAGCTGAACAGGCTGCTAAACTTTCTGTGTTATTCGATGTTGGTGGCATAATCGGTGGTGTATTGATAGGATGGTTTAGTGATAGTCAGTCAAATGGACAAAACCTCAACGAAGATGAAAAAACAATTAAAATCGTGCACTTGCCTGTCTTGTTATGCTAGCTTTTGCGGCACCTTTGCTGTTAGCTTATCGTTTTATGACTTCTACGAACTCGCTGATGTCATTAATTTTACTTACATGTTGCGGTTCTGCAATCAACGGACCTTATGCCTTAGTTACAACTGCTGTATCTGCCGACCTGNGTACTCAGTCGGCCTTGCTAGGGCGAACTCGTGCTTTGGCTACAATTACATCTATTATTGATGGAATGGGATCATTGGGTGCTGCATTANGTCCACTTCTGACTGGTTTACTAGTTCCATACNGTTGGTCTGTTGTATTTGCTATGCTTATCACATCTGATCTACTGGCCATGTTAATGTCAATATGGNATTGTCGTTAATTCAAGTCGTCGTCAACAACGTCGAACATATTATCGACTTCAATCAANCATTACTACTTTAATAAAAATTTGTTTT] [+] EMBL CD115889 [TGGGGAGCTTCTTTTTATCTGCCCGGTCTCATCATGATGGTTGGGGCATTGGTTGTCTACTTGACAGTTATAGAGCATCCTAACATGTTGGTTTATAACTCGCCTATTTCAGACAAAACAGGTACTCAAATTCCAATGTCAGGAAGCATATATGGGGAAAACATCGACTGCGAAAGGTCGGATAAGGATGGTTTAAGGCCTTTAATATCGAATACTGAGGCCACTCGACCAATTAGTTTCATTAAAGCTATTCTATTGCCAAGTGTGTTTACCTACTCACTCTTATTATTCTTTACGAAACTTGTCTCATATACATTTCTTTATTGGTTACCAAACTACTTAACGATTGTTGAACATGTATCAGCTGAACAGGCTGCTAAACTTTCTGTGTTATTCGATGTTGGTGGCATAATCGGTGGTGTATTGATAGGATGGTTTAGTGATAGTCAGTCAAATGGACAAAACCTCAACGAAGATGAAAAA ] [+] EMBL CD082752 [ CGACCAATTAGTTTCATTGAAGCTATTCTATTGCCAAGTGTGTTCACCTACTCACTCTTATTATTCTTTACGAAACTTGTCTCATATACATTTCTTTATTGGTTACCAAACTACTTAACGATTGTTGAACATGTATCAGCTGAACAGGCTGCTAAACTTTCTGTGTTATTCGATGTTGGTGGCATAATCGGTGGTGTATTGATAGGATGGTTTAGTGATAGTCAGTCAAATGGACAAAACCTCAACGAAGATGAAAAAACAATTAAAATCGTGCACTTGCCTGTCTTGTTATGCTAGCTTTTGCGGCACCTTTGCTGTTAGCTTATCGTTTTATGACTTCTACGAACTCGCTGATGTCATTAATTTTACTTACATGTTGCGGTTCTGCAATCAACGGACCTTATGCCTTAGTTACAACTGCTGTATCTGCCGACCTGNGTACTCAGTCGGCCTTGCTAGGGCGAACTCGTGCTTTGGCTACAATTACATCTATTATTGATGGAATGGGATCATTGGGTGCTGCATTANGTCCACTTCTGACTGGTTTACTAGTTCCATACNGTTGGTCTGTTGTATTTGCTATGCTTATCACATCTGATCTACTGGCCATGTTAATGTCAATATGGNATTGTCGTTAATTCAAGTCGTCGTCAACAACGTCGAACATATTATCGACTTCAATCAANCATTACTACTTTAATAAAAATTTGTTT ] [-] EMBL CD076342 [ GGTTACCAAACTACTTAACGATTGTTGAACATGTATCAGCTGAACAGGCTGCTAAACTTTCTGTGTTATTCGATGTTGGTGGCATAATCGGTGGTGTATTGATAGGATGGTTTAGTGATAGTCAGTCAAATGGACAAACCCTCAACGAAGATGAAAAACCAATTAAAATCGTGCACTTGCCTGTCTTGTTATGCTAGCTTTTGCGGCACCTTTGCTGTTAGCTTATCGTTTTATGACTTCTACGAACTCGCTGATGTCATTAATTTTACTTACATGTTGCGGTTCTGCAATCAACGGCCCTTATGCCTTAGTTACAACTGCTGTATCTGCCGACCTGGGTACTCAGTCGGCCTTGCTAGGGCGAACTCGTGCTTTGGCTACAATTACATCTATTATTGATGGAATGGGATCATTGGGTGCTGCATTAGGTCCACTTCTGACTGGTTTACTAGTTCCATACGGTTGGTCTGTTGTATTTGCTATGCTTATCACATCTGATCTACTGGCCATGTTAATGTCAATATGG ATTGTCGTTAATTCAAGTCGTCGTCAACAACGTCGAACATATTATCGACTTCAATCAACAATTACTAC TTAATTAAAATTTGTTTT] consensusID : consensus_8574#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence [TCTATTTGAAATTTGTGCTTATGATTTTATTCAGAAGAACAATTAAAGCTCCATAACCAAATAATCCAGCTCAAAAACGAAACTCCGCTAGGATTCAATTATCTCCACAAAGTATATATACGGTAATTCATGAATAAATATGTTCGTTAATTATTTTATGAAATTTCCTCCTTGTCATTTCCTTTTTCTGTTTATTTTACAGAGTGTGTTCACCTACTCACTCTTATTATTCTTTACGAAACTTGTCTCATATACATTTCTTTATTGGTTACCAAACTACTTAACGATTGTTGAACATGTATCAGCTGAACAGGCTGCTAAACTTTCTGTGTTATTCGATGTTGGTGGCATAATCGGTGGTGTATTGATAGGATGGTTTAGTGATAGTCAGTCAAATGGACAAAACCTCAACGAAGATGAAAAAACAATTAAAAAACGTGCACTTGCCTGTCTTGTTATGCTAGCTTTTGCGGCACCTTTGGTAAGTTTAAATTGTTAACGATCTTGCTTTTCTAGAAGAGTTGTCTAAACGTATACCTAATGTGTAATTTCTTTAGTCTGACGAACACATTTATAATCTCTATAGTTGATTTCATTATTTCT] [+] EMBL CD079032 [TCTATTTGAAATTTGTGCTTATGATTTTATTCAGAAGAACAATTAAAGCTCCATAACCAAATAATCCAGCTCAAAAACGAAACTCCGCTAGGATTCAATTATCTCCACAAAGTATATATACGGTAATTCATGAATAAATATGTTCGTTAATTATTTTATGAAATTTCCTCCTTGTCATTTCCTTTTTCTGTTTATTTTACAGAGTGTGTTCACCTACTCACTCTTATTATTCTTTACGAAACTTGTCTCATATACATTTCTTTATTGGTTACCAAACTACTTAACGATTGTTGAACATGTATCAGCTGAACAGGCTGCTAAACTTTCTGTGTTATTCGATGTTGGTGGCATAATCGGTGGTGTATTGATAGGATGGTTTAGTGATAGTCAGTCAAATGGACAAAACCTCAACGAAGATGAAAAAACAATTAAAAAACGTGCACTTGCCTGTCTTGTTATGCTAGCTTTTGCGGCACCTTTGGTAAGTTTAAATTGTTAACGATCTTGCTTTTCTAGAAGAGTTGTCTAAACGTATACCTAATGTGTAATTTCTTTAGTCTGACGAACACATTTATAATCTCTATAGTTGATTTCATTATTTCT] consensusID : consensus_8574#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 573 fasta sequence [CCAATATCACTCCTTCGCTGTGTTTAACCTTACTTAATCAAGTCATTGCATTTAAAGAATCTACTACTTACTATAACTCGTGACAATTACGTCGGTAAATTTAACCATGATTTTTATATCTTTACATTATGTACTTAAATTTTCTGACCAACTGTTTCGTGTTTTGTCATTACAGCTGTTAGCTTATCGTTTTATGACTTCTACGAACTCGCTGATGTCATTAATTTTACTTACATGTTGCGGTTCTGCAATCAACGGACCTTATGCCTTAGTTACAACTGCTGTATCTGCCGACCTGGGTACTCAGTCGGCCTTGCTAGGGCGAACTCGTGCTTTGGCTACAATTACATCTATTATTGATGGAATGGGATCATTGGGTGCTGCATTAGGTCCACTTCTGACTGGTTTACTAGTTCCATACGGTTGGTCTGTTGTATTTGCTATGCTTATCACATCTGATCTACTGGCCATGTTAATGTCAATATGGATTGTCGTTAATTCAAGTCGTCGTCAACAACGTCGAACATATTATCGACTTCAATCAACAATTACTACTTAATTAAAATTTGTTTT] [-] EMBL CD073484 [CCAATATCACTCCTTCGCTGTGTTTAACCTTACTTAATCAAGTCATTGCATTTAAAGAATCTACTACTTACTATAACTCGTGACAATTACGTCGGTAAATTTAACCATGATTTTTATATCTTTACATTATGTACTTAAATTTTCTGACCAACTGTTTCGTGTTTTGTCATTACAGCTGTTAGCTTATCGTTTTATGACTTCTACGAACTCGCTGATGTCATTAATTTTACTTACATGTTGCGGTTCTGCAATCAACGGACCTTATGCCTTAGTTACAACTGCTGTATCTGCCGACCTGGGTACTCAGTCGGCCTTGCTAGGGCGAACTCGTGCTTTGGCTACAATTACATCTATTATTGATGGAATGGGATCATTGGGTGCTGCATTAGGTCCACTTCTGACTGGTTTACTAGTTCCATACGGTTGGTCTGTTGTATTTGCTATGCTTATCACATCTGATCTACTGGCCATGTTAATGTCAATATGGATTGTCGTTAATTCAAGTCGTCGTCAACAACGTCGAACATATTATCGACTTCAATCAACAATTACTACTTAATTAAAATTTGTTTT] consensusID : consensus_8574#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 404 fasta sequence [GTGCTTTGGCTACAATTACATCTATTATTGATGGAATGGGATCATTGGTCAAATGGACAAAACCTCAACGAAGATGAAAAAACAATTAAAAAACGTGCACTTGCCTGTCTTGTTATGCTAGCTTTTGCGGCACCTTTGCTGTTAGCTTATCGTTTTATGACTTCTACGAACTCGCTGATGTCATTAATTTTACTTACATGTTGCGGTTCTGCAATCAACGGACCTTATGCCTTAGTTACAACTGCTGTATCTGCCGACCTGGTACTCAGTCGGCCTTGCTAGGGCGAACTCGTGCTTTGGCTACAATTACATCTATTATTGATGGAATGGGATCATTGGTCAAATGTACAAAACCTCAACGAAGATGAAAAAACAATTAAAAAACGTGCACTTGCCTGTCTTGT] [+] EMBL CD122160 [GTGCTTTGGCTACAATTACATCTATTATTGATGGAATGGGATCATTGGTCAAATGGACAAAACCTCAACGAAGATGAAAAAACAATTAAAAAACGTGCACTTGCCTGTCTTGTTATGCTAGCTTTTGCGGCACCTTTGCTGTTAGCTTATCGTTTTATGACTTCTACGAACTCGCTGATGTCATTAATTTTACTTACATGTTGCGGTTCTGCAATCAACGGACCTTATGCCTTAGTTACAACTGCTGTATCTGCCGACCTGGTACTCAGTCGGCCTTGCTAGGGCGAACTCGTGCTTTGGCTACAATTACATCTATTATTGATGGAATGGGATCATTGGTCAAATGTACAAAACCTCAACGAAGATGAAAAAACAATTAAAAAACGTGCACTTGCCTGTCTTG ] [-] EMBL CD122169 [ TGCTTTGGCTACAATTACATCTATTATTGATGGAATGGGATCATTGGTCAAATGGACAAAACCTCAACGAAGATGAAAAAACAATTAAAAAACGTGCACTTGCCTGTCTTGTTATGCTAGCTTTTGCGGCACCTTTGCTGTTAGCTTATCGTTTTATGACTTCTACGAACTCGCTGATGTCATTAATTTTACTTACATGTTGCGGTTCTGCAATCAACGGACCTTATGCCTTAGTTACAACTGCTGTATCTGCCGACCTGGTACTCAGTCGGCCTTGCTAGGGCGAACTCGTGCTTTGGCTACAATTACATCTATTATTGATGGAATGGGATCATTGGTCAAATGGACAAAACCTCAACGAAGATGAAAAAACAATTAAAAAACGTGCACTTGCCTGTCTTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8574#2 ------------------------------------------------------------ consensus_8574#3 ------------------------------------------------------------ consensus_8574#0 TGGGGAGCTTCTTTTTATCTGCCCGGTCTCATCATGATGGTTGGGGCATTGGTTGTCTAC 60 consensus_8574#1 ------------------------------------------------------------ consensus_8574#2 ------------------------------------------------------------ consensus_8574#3 ------------------------------------------------------------ consensus_8574#0 TTGACAGTTATAGAGCATCCTAACATGTTGGTTTATAACTCGCCTATTTCAGACAAAACA 120 consensus_8574#1 ------------------------------------------------------------ consensus_8574#2 ------------------------------------------------------------ consensus_8574#3 ------------------------------------------------------------ consensus_8574#0 GGTACTCAAATTCCAATGTCAGGAAGCATATATGGGGAAAACATCGACTGCGAAAGGTCG 180 consensus_8574#1 ------------------------------------------------------------ consensus_8574#2 ------------------------------------------------------------ consensus_8574#3 ------------------------------------------------------------ consensus_8574#0 GATAAGGATGGTTTAAGGCCTTTAATATCGAATACTGAGGCCACTCGACCAATTAGTTTC 240 consensus_8574#1 ------------------------------------------------------------ consensus_8574#2 ------------------------------------------------------------ consensus_8574#3 ------------------------------------------------------------ consensus_8574#0 ATTAAAGCTATTCTATTGCCAAGTGTGTTTACCTACTCACTCTTATTATTCTTTACGAAA 300 consensus_8574#1 ------------------------------------------------------------ consensus_8574#2 ------------------------------------------------------------ consensus_8574#3 ------------------------------------------------------------ consensus_8574#0 CTTGTCTCATATACATTTCTTTATTGGTTACCAAACTACTTAACGATTGTTGAACATGTA 360 consensus_8574#1 ------------------------------------------------------------ consensus_8574#2 ----------CCAATATCACTCCTTCGCTGTGTTTAACCTTACTTAATCAAGTCATTGCA 50 consensus_8574#3 ---------------------------------------GTGCTTTGGCTA-CAATTACA 20 consensus_8574#0 TCAGCTGAACAGGCTGCTAAACTTTCTGTGTTATTCGATGTTGGTGGCATAATCGGTG-G 419 consensus_8574#1 ------------TCTATTTGAAATTTG-TGCTTATGATTTTATTCAGAAGAACAATTAAA 47 * * * consensus_8574#2 TTTAAAGAATCTACTACTTACT-ATAACTCGTGACAATTACGTCGGT--AAATTTAACCA 107 consensus_8574#3 TCTATT--ATTGATGGAATGGG-ATCATTGGTCAAATGGACAA------AACCTCAACGA 71 consensus_8574#0 TGTATTGATAGGATGGTTTAGTGATAGTCAGTCAAATGGACAA------AACCTCAACGA 473 consensus_8574#1 GCTCCATAACCAAATAATCCAGCTCAAAAACGAAACTCCGCTAGGATTCAATTATCTCCA 107 * * * * ** * * consensus_8574#2 TGATTTTTATATCTTTACATTATGTACTTAAATTTTCTGACCAACTGTTTCGTG----TT 163 consensus_8574#3 AGATGAAAAAACAATTAAAAAACGTGC---ACTTGCCTGTCTTGTTATGCTAGC----TT 124 consensus_8574#0 AGATGAAAAAACAATTAAAAT-CGTGC---ACTTGCCTGTCTTGTTATGCTAGC----TT 525 consensus_8574#1 CAAAGTATATATACGGTAATT-CATGAATAAATATGTTCGTTAATTATTTTATGAAATTT 166 * * * * * * * * * * ** consensus_8574#2 TTGT--CATTACAGCTGTTAGCTTATCGTTTTATGACTTCTACGAACTCGCTGA-TGTCA 220 consensus_8574#3 TTGCGGCACCTTTGCTGTTAGCTTATCGTTTTATGACTTCTACGAACTCGCTGA-TGTCA 183 consensus_8574#0 TTGCGGCACCTTTGCTGTTAGCTTATCGTTTTATGACTTCTACGAACTCGCTGA-TGTCA 584 consensus_8574#1 CCTCCTTGTCATTTCCTTTTTCTGTTTATTTTACAGAGTGTGTTCACCTACTCACTCTTA 226 * ** ** * ***** * * ** ** * * * * consensus_8574#2 TTAATTTTACTTACATGTTGCGGTTCTGCAATC----AACGG--ACCTTATGCCTTAGTT 274 consensus_8574#3 TTAATTTTACTTACATGTTGCGGTTCTGCAATC----AACGG--ACCTTATGCCTTAGTT 237 consensus_8574#0 TTAATTTTACTTACATGTTGCGGTTCTGCAATC----AACGG--ACCTTATGCCTTAGTT 638 consensus_8574#1 TTATTCTTTACGAAACTTGTCTCATATACATTTCTTTATTGGTTACCAAACTACTTAACG 286 *** * ** * * * * * * ** * * ** *** * **** consensus_8574#2 ACAACTGC---TGTATCTGCCGACCTGGGTACTCAGTCGGCCTTGCTAGGGCGAACTCGT 331 consensus_8574#3 ACAACTGC---TGTATCTGCCGACCTGG-TACTCAGTCGGCCTTGCTAGGGCGAACTCGT 293 consensus_8574#0 ACAACTGC---TGTATCTGCCGACCTGNGTACTCAGTCGGCCTTGCTAGGGCGAACTCGT 695 consensus_8574#1 ATTGTTGAACATGTATCAGCTGAACAGGCTGCTAAACTTTCTGTGTTATTCGATGTTGGT 346 * ** ****** ** ** * * * ** * * ** ** * ** consensus_8574#2 GCTTTGGCTACAATTACATCTATTATTGATGGAATGG-GATCATTGGGTGC-TGCATTAG 389 consensus_8574#3 GCTTTGGCTACAATTACATCTATTATTGATGGAATGG-GATCATTGGTCAAATGTACAAA 352 consensus_8574#0 GCTTTGGCTACAATTACATCTATTATTGATGGAATGG-GATCATTGGGTGC-TGCATTAN 753 consensus_8574#1 GGCATAATCGGTGGTGTATTGATAG--GATGGTTTAGTGATAGTCAGTCAAATGGACAAA 404 * * * ** ** ***** * * *** * * ** * * consensus_8574#2 GTCCACTTCTGACTGGTTTACTAGTTCCATACGGTTGGTCTGTTGTATTTGCTATGCTTA 449 consensus_8574#3 ACCTCAACGAAGATGAAAAAACAATTAAAAAACGTGCACTTGCCTGTCTTGT-------- 404 consensus_8574#0 GTCCACTTCTGACTGGTTTACTAGTTCCATACNGTTGGTCTGTTGTATTTGCTATGCTTA 813 consensus_8574#1 ACCTCAACGAAGATGAAAAAACAATTAAAAAACGTGCACTTGCCTGTCTTGTTATGCTAG 464 * ** * * ** * * ** ** *** consensus_8574#2 TCACATCTGATCTACTGGCCATGTTAATGTCAATATGGA-TTGTCGTTA-ATTCAAGTCG 507 consensus_8574#3 ------------------------------------------------------------ consensus_8574#0 TCACATCTGATCTACTGGCCATGTTAATGTCAATATGGNATTGTCGTTA-ATTCAAGTCG 872 consensus_8574#1 CTTTTGCGGCACCTTTGGTAAGTTTAAATTGTTAACGATCTTGCTTTTCTAGAAGAGTTG 524 consensus_8574#2 TCGTCAACAACGTCGAACATATTATCGACTTCAATCAACAATTACTACTT-AAT---TAA 563 consensus_8574#3 ------------------------------------------------------------ consensus_8574#0 TCGTCAACAACGTCGAACATATTATCGACTTCAATCAANCATTACTACTTTAAT---AAA 929 consensus_8574#1 TCTAAACGTATACCTAATGTGTAATTTCTTTAGTCTGACGAACACATTTATAATCTCTAT 584 consensus_8574#2 AATTTGTTTT--------- 573 consensus_8574#3 ------------------- consensus_8574#0 AATTTGTTTT--------- 939 consensus_8574#1 AGTTGATTTCATTATTTCT 603 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||