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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8819#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1098 fasta sequence
[GTATGATTCAGAAATTTCCGATAGATACAACAATGTACGGCGTCGACCAAGTCGCATTGTTCCACCCATAATTCCGGGATTATGTTCAGGCATCTCAATGATCACTGGATGAGTGGTATTTGGGTCGAATTCGGTGGAATTAGCGTCTTTCCAACCAAGTACATTTCTGGAAAATTCAATTACAGCACATTGGAGGCCCAAACAAAGACCCAAAAACGGCACACCCCTTTCTCGACAGAAGCGTATAGCAGCTAGTTTCCCGTCAACACCTCGCTGACCAAAACCTCCAGGAACAACAACAGCATCGGAGCTACTCAAAGTGAGCCAAGCTTGATGAAATGCATCTGGACATACGATACGAGTGTTTTCTTCGAGATCTTCAGCACACACAAGTGAAAGATCCAGTTTTAAATTTGTATAAATTGCAGCATGACGAAGAGCCTTTAACAATGACAAATAAGCATCACTAAATTTGGTATATTTCCCAACTATAGCGATACGAACAATTTCCGATGCCAGTTCCATTTGACGAGTCAATGCTTTCCATTTCCCAAGAATTGGATATTCAATGTGTAGTTTAAGATTCANATGGAAATGCTCCAGTAGAATCGAGCATAAATTTTGATCATTTAATCGTAAAGGCACTTCATATAAATCACTAACATCTAAGGAACCAATAACACGTTCTACTGCAACTTGACTAAATAGGCTGAGTTTGTTGATGACACTAGAGGGTAGCGGTGAACTACAACGACACATAAGAAGGTCTGGATGTAAGCCGCAGGCACGCAGTTCACGTACGCTTGCTTGGGTAGGTTTGGTTTTAGGCTCTCCAACAGACTGAAGCTGAGGTACTAGGCTAACATGTACGCAACAGAAATTGACACTTCCCACTCGAAAAAGCATTTGTCTGAAGGCCTCAACATACGGCATAGATTCAATATCGCCGATAGTACCACCAAGTTCAATGATGCATACCTCTGGGTTTGAACCACTTTCATCAACTGGAATCCGAGAAACATTTGTGACCCATTCAATAATAGCATCTGTGATGTGCGGGACGACTTGTACTGTTTTCCCAAGGTAATCTCCACGACG]
[+] EMBL CD065231 [GTATGATTCAGAAATTTCCGATAGATACAACAATGTACGGCGTCGACCAAGTCGCATTGTTCCACCCATAATTCCGGGATTATGTTCAGGCATCTCAATGATCACTGGATGAGTGGTATTTGGGTCGAATTCGGTGGAATTAGCGTCTTTCCAACCAAGTACATTTCTGGAAAATTCAATTACAGCACATTGGAGGCCCAAACAAAGACCCAAAAACGGCACACCCCTTTCTCGACAGAAGCGTATAGCAGCTAGTTTCCCGTCAACACCTCGCTGACCAAAACCTCCAGGAACAACAACAGCATCGGAGCTACTCAAAGTGAGCCAAGCTTGATGAAATGCATCTGGACATACGATACGAGTGTTTTCTTCGAGATCTTCAGCACACACAAGTGAAAGATCCAGTTTTAAATTTGTATAAATTGCAGCATGACGAAGAGCCTTTAACAATGACAAATAAGCATCACTAAATCTGGTATATTTCCCAACTATAGCGATACGAACAATTTCCGATGCCAGTTCCATTTGACGAGTCAATGCTTTCCATTTCCCAAGAATTGGATATTCAATGTGTAGTTTAAGATTCANAT ]
[-] EMBL CD127743 [ TATGATTTAGAAATTTCCGATAGATACAACAATGTACGGCGTCGACCAAGTCGCATTGTTCCACCCATAATTCCGGGATTATGTTCAGGCATCTCAATGATCACTGGATGAGTGGTATTTGGGTCGAATTCGGTGGAATTAGCGTCTTTCCAACCAAGTACATTTCTGGAAAATTCAATTACAGCACATTGGAGGCCCAAACAAAGACCCAAAAACGGCACACCCCTTTCTCGACAGAAGCGTATAGCAGCTAGTTTCCCGTCAACACCTCGCTGACCAAAACCTCCAGGAACAACAACAGCATCGGAGCTACTCAAAGTGAGCCAAGCTTGATGAAATGCATCTGGACATACGATACGAGTGTTTTCTTCGAGATCTTCAGCACACACAAGTGAAAGATCCAGTTTTAAATTTGTATAAATTGCAGCATGACGAAGAGCCTTTAACAATAACAA ]
[-] EMBL CD096540 [ TTAGCGTCTTTCCAACCAAGTACATTTCTGGAAAATTCAATTACAGCACATTGGAGGCCCAAACAAAGACCCAAAAACGGCACACCCCTTTCTCGACAGAAGCGTATAGCAGCTAGTTTCCCGTCAACACCTCGCTGACCAAAACCTCCAGGAACAACAACAGCATCGGAGCTACTCAAAGTGAGCCAAGCTTGATGAAATGCATCTGGACATACGATACGAGTGTTTTCTTCGAGATCTTCAGCACACACAAGTGAAAGATCCAGTTTTAAATTTGTATAAATTGCAGCATGACGAAGAGCCTTTAACAATGACAAATAAGCATCACTAAATTTGGTATA ]
[-] EMBL CD096505 [ TTAGCGTCTTTCCAACCAAGTACATTTCTGGAAAATTCAATTACAGCACATTGGAGGCCCAAACAAAGACCCAAAAACGGCACACCCCTTTCTCGACAGAAGCGTATAGCAGCTAGTTTCCCGTCAACACCTCGCTGACCAAAACCTCCAGGAACAACAACAGCATCGGAGCTACTCAAAGTGAGCCAAGCTTGATGAAATGCATCTGGACATACGATACGAGTGTTTTCTTCGAGATCTTCAGCACACACAAGTGAAAGATCCAGTTTTAAATTTGTATAAATTGCAGCATGACGAAGAGCCTTTAACAATGACAAATAAGCATCACTAAATTTGGTATA ]
[-] EMBL CD155091 [ CTTTCCATTTCCCAAGAATTGGATATTCAATGTGTAGTCTAGGATTCAAATGGAAATGCTCCAGTAGAATCGAGCATAAATTTTGATCATTTAATCGTAAAGGCACTTCATATAAATCACTAACATCTAAGGAACCAATAACACGTTCTACTGCAACTTGACTAAATAGGCTGAGTTTGTTGATGACACTAGAGGGTAGCGGTGAACTACAACGACACATAAGAAGGTCTGGATGTAAGCCGCAGGCACGCAGTTCACGTACGCTTGCTTGGGTAGGTTTGGTTTTAGGCTCTCCAACAGACTGAAGCTGAGGTACTAGGCTAACATGTACGCAACAGAAATTGACACTTCCCACTCGAAAAAGCATTTGTCTGAAGGCCTCAACATACGGCATAGATTCAATATCGCCGATAGTACCACCAAGTTCAATGATGCATACCTCTGGGTTTGAACCACTTTCATCAACTGGAATCCGAGAAACATTTGTGACCCATTCAATAATAGCATCTGTGATGTGCGGGACGACTTGTACTGTTTTCCCAAGGTAATCTCCACGACG]
[+] EMBL CD157316 [ AATAACACGTTCTACTGCAACTTGACTAAATAGGCTGATTTTGTTGATGACACTAGAGGGTAGCGGTGAACTACAACGACACATAAGAAGGTCTGGATGTAAGCCGCAGGCACGCAGTTCACGTACGCTTGCTTGGGTAGGTTTGGTTTTAGGCTCACCAACAGACTGAAGCTGAGGTACTAGGCTAACATGTACGCAACAGAAATTGACACTTCCCACTCGAAAAAGCATTTGTCTGAAGGCCTCAACATACGGCATAGATTCAATATCGCCGATAGTACCACCAAGTTCAATGATGCATACCTCTGGGTTTGAACCACTTTCATCAACTGGAATCCGAGAAACATTTGTGACCCATTCAATAATAGCATCTGTGATGTGCGGGACGACTTGTACTGTTTTCCCAAGGTA ]
consensusID : consensus_8819#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 309 fasta sequence
[AGGTAGGTACGTTGTATGTTGATTTAGAAATTTCCGATAGATACACCAATGTACGGCGTCGACCAAGTCGCATTGTTCCACCCATAATTCCGGGATTATGTTCAGGCATCTCAATGATCACTGGATGAGTGGTATTTGGGTCGAATTCGGTGGAATTAGCGTCCTATTTTCAAGAAAAGAACAAAACACAGGTCAAAATATCATACGGAGCAACAACAATAAATAAATAAGATCAGTATCAATCAGTTATAGATACTGATAGCTGACATAAATATGTATTGCCCTGGAACCCCTCTGGAGGCTACTTGC]
[+] EMBL CD127673 [AGGTAGGTACGTTGTATGTTGATTTAGAAATTTCCGATAGATACACCAATGTACGGCGTCGACCAAGTCGCATTGTTCCACCCATAATTCCGGGATTATGTTCAGGCATCTCAATGATCACTGGATGAGTGGTATTTGGGTCGAATTCGGTGGAATTAGCGTCCTATTTTCAAGAAAAGAACAAAACACAGGTCAAAATATCATACGGAGCAACAACAATAAATAAATAAGATCAGTATCAATCAGTTATAGATACTGATAGCTGACATAAATATGTATTGCCCTGGAACCCCTCTGGAGGCTACTTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8819#0 -------------GTATG---ATTCAGAAATTTCCGATAGATACAACAATGTACGGCGTC 44
consensus_8819#1 AGGTAGGTACGTTGTATGTTGATTTAGAAATTTCCGATAGATACACCAATGTACGGCGTC 60
***** *** ******************** **************
consensus_8819#0 GACCAAGTCGCATTGTTCCACCCATAATTCCGGGATTATGTTCAGGCATCTCAATGATCA 104
consensus_8819#1 GACCAAGTCGCATTGTTCCACCCATAATTCCGGGATTATGTTCAGGCATCTCAATGATCA 120
************************************************************
consensus_8819#0 CTGGATGAGTGGTATTTGGGTCGAATTCGGTGGAATTAGCGTCTTTCCAACCAAGTACAT 164
consensus_8819#1 CTGGATGAGTGGTATTTGGGTCGAATTCGGTGGAATTAGCGTCCTATTT-TCAAGAAAAG 179
******************************************* * **** * *
consensus_8819#0 TTCTGGAAAATTCAATTACAGCACATTGGAGGCCCAAACAAAGACCCAAAAACGGCACAC 224
consensus_8819#1 AAC---AAAACACAGGT-CAAAATATCATACGGAGCAACAACAATAAATAAATAAGATCA 235
* **** ** * ** * ** * * ***** * * *** *
consensus_8819#0 CCCTTTCTCGACAGAAGCGTATAGCAGCTAGTTTCCCGTCAACACCTCGCTGACCAAAAC 284
consensus_8819#1 GTATCAATCAGTTATAGATACTGATAGCTGA-----CATAAATATGTATTGCCCTGGAAC 290
* ** ** * **** * * ** * * * ***
consensus_8819#0 CTCCAGGAACAACAACAGCATCGGAGCTACTCAAAGTGAGCCAAGCTTGATGAAATGCAT 344
consensus_8819#1 CCCTCTGGAGGCTACTTGC----------------------------------------- 309
* * * * * **
consensus_8819#0 CTGGACATACGATACGAGTGTTTTCTTCGAGATCTTCAGCACACACAAGTGAAAGATCCA 404
consensus_8819#1 ------------------------------------------------------------
consensus_8819#0 GTTTTAAATTTGTATAAATTGCAGCATGACGAAGAGCCTTTAACAATGACAAATAAGCAT 464
consensus_8819#1 ------------------------------------------------------------
consensus_8819#0 CACTAAATTTGGTATATTTCCCAACTATAGCGATACGAACAATTTCCGATGCCAGTTCCA 524
consensus_8819#1 ------------------------------------------------------------
consensus_8819#0 TTTGACGAGTCAATGCTTTCCATTTCCCAAGAATTGGATATTCAATGTGTAGTTTAAGAT 584
consensus_8819#1 ------------------------------------------------------------
consensus_8819#0 TCANATGGAAATGCTCCAGTAGAATCGAGCATAAATTTTGATCATTTAATCGTAAAGGCA 644
consensus_8819#1 ------------------------------------------------------------
consensus_8819#0 CTTCATATAAATCACTAACATCTAAGGAACCAATAACACGTTCTACTGCAACTTGACTAA 704
consensus_8819#1 ------------------------------------------------------------
consensus_8819#0 ATAGGCTGAGTTTGTTGATGACACTAGAGGGTAGCGGTGAACTACAACGACACATAAGAA 764
consensus_8819#1 ------------------------------------------------------------
consensus_8819#0 GGTCTGGATGTAAGCCGCAGGCACGCAGTTCACGTACGCTTGCTTGGGTAGGTTTGGTTT 824
consensus_8819#1 ------------------------------------------------------------
consensus_8819#0 TAGGCTCTCCAACAGACTGAAGCTGAGGTACTAGGCTAACATGTACGCAACAGAAATTGA 884
consensus_8819#1 ------------------------------------------------------------
consensus_8819#0 CACTTCCCACTCGAAAAAGCATTTGTCTGAAGGCCTCAACATACGGCATAGATTCAATAT 944
consensus_8819#1 ------------------------------------------------------------
consensus_8819#0 CGCCGATAGTACCACCAAGTTCAATGATGCATACCTCTGGGTTTGAACCACTTTCATCAA 1004
consensus_8819#1 ------------------------------------------------------------
consensus_8819#0 CTGGAATCCGAGAAACATTTGTGACCCATTCAATAATAGCATCTGTGATGTGCGGGACGA 1064
consensus_8819#1 ------------------------------------------------------------
consensus_8819#0 CTTGTACTGTTTTCCCAAGGTAATCTCCACGACG 1098
consensus_8819#1 ----------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||