These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8895#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1080 fasta sequence [CTATCATCTCAGTCGTACAGTAGTTTGAATTTTAATAGTTCAGTATGTGACAACTTTACTAATATCAACCCACATTCAATATTCATGACATCTAATGAACCTAGTTGTTTTCAATTCGGGATGAGAAGTCCCACTGATGATAAGCCCAACTCTTTTGATTTCACTACATTTGGTCCCGTTGGGTCTTCATCACCAGCCGGTGCTTTCATCCACTCAAATTTAATTAGTTCTAACTGCAATAGTTCTATCTTGTCAAATTTATCTTCAACAGGTTTACAGAGTAGACAAGTGTGTTTAGATTCACAAAATACTGATACCTTAATTTTTCCTATGATGTCTCCATCAGTTTCGCATTCAGATGCCACCTCGAATTCATCTACGATGTAGTAGCGATCAGACACTATAAGAATTGAGTTGTTTTTGTCTTATCATACGTTTACATCAAAAATTCTTA-TTTTTGCTGTATTTCCGTTATTAATTTTTATCTGGACAGCAGTATGGAAAGAAAACTAAGTTTTATCAACTGTTTAAGAGCTTTTCGAAACTCGTGATTCGTCTTACGGGGACCCAACTTTGCATTTTGATAACTTTCAGAGAGTTTGACCTTTTTTCTGGAGTTTATGTACCCAAATTTTATTGTTACTATTATTACTCTTGATATATTTTTT-TGCGTTATTATATCGTAATCGGTCAACATAACAGCAGAATCTGCTTTAAATGGTTTGTCTCAGCTGCCTATTTGTCTCTTCTAAGATTTGTCTTCTAGACCCTTCCAATCACTTTCTTTAATATCTTCATACGAATTTTGCTATTTCTTTTGTTTCCGAACTAAATATTATGGTCTAGTCGTTGCGTTTTCGTGTTAATTTCTTGTGTTATCCTTTATGATTTTGTTCTTACCTTTCCCTTTTTCAATGTGTTGCTTAACGCTTTGTAGTCGATACTAAAATTGTGGTCTTTGTTTTGTATTCACAACTTATGCACACTTTTCCAACTCATATTTAATATTCATACGTTTAAGAGTGTCTCAATGGTTGGCTAGTCATCTTTTTTCCTGTTTCTTATCTTTCATGTTCAGTT] [+] EMBL CD124583 [CTATCATCTCAGTCGTACAGTAGTTTGAATTTTAATAGTTCAGTATGTGACAACTTTACTAATATCAACCCACATTCAATATTCATGACATCTAATGAACCTAGTTGTTTTCAATTCGGGATGAGAAGTCCCACTGATGATAAGCCCAACTCTTTTGATTTCACTACATTTGGTCCCGTTGGGTCTTCATCACCAGCCGGTGCTTTCATCCACTCAAATTTAATTAGTTCTAACTGCAATAGTTCTATCTTGTCAAATTTATCTTCAACAGGTTTACAGAGTAGGCAAGTGTGTTTAGATTCACAAAATACTGATACCTTAATTTTTCCTATGATGTCTCCATCAGTTTCGCATTCAGATGCCACCTCGAATTCATCTACGATGTAGTAGCGATCAGACACTATAAGAATTGAGTTGTTTTTGTCTTATCATACGTTTACATCAAAAATTCTTA TTTTTGCTGTATTTCCGTTATTAATTTTTATCTGGACAGCAGTATGGAAAGAAAACTAAGTTTTATCAACTGTTTAAGAGCTTTTCGAAA ] [-] EMBL CD160741 [ GCAATAGTTCTATCTTGTCAAATTTATCTTCAACAGGTTTACAGAGTAGACAAGTGTGTTTAGATTCACAAAATACTGATACCTTAATTTTTCCTATGATGTCTCCATCAGTTTCGCATTCAGATGCCACCTCGAATTCATCTACGATGTAGTAGCGATCAGACACTATAAGAATTGAGTGGTTTTTGTCTTATCATACGTTTACATCAAAAATTCTTA TTTTTGCTGTATTTCCGTTATTAATTTTTATCTGGACAGCAGTATGGAAAGAAAACTAAGTTTTATCAACTGTTTAAGAGCTTTTCGAAACTCGTGATTCGTCTTACGGGGACCCAACTTTGCATTTTGATAACTTTCAGAGAGTTTGACCTTTTTTCTGGAGTTTATGTACCCAAATTTTATTGTTACTATTATTACTCTTGATATATTTTTT TGCGTTATTATATCGTAATCGGTCAACATAACAGCAGAATCTGCTTTAAATGGTTTGTCTCAGCTGCCTATTTGTCTCTTCTAAGATTTGTCTTCTAGACCCTTCCA ] [-] EMBL CD160714 [ GCAATAGTTCTATCTTGTCAAATTTATCTTCAACAGGTTTACAGAGTAGACAAGTGTGTTTAGATTCACAAAATACTGATACCTTAATTTTTCCTATGATGTCTCCATCAGTTTCGCATTCAGATGCCACCTCGAATTCATCTACGATGTAGTAGCGATCAGACACTATAAGAATTGAGTTGTTTTTGTCTTATCATACGTTTACATCAAAAATTCTTATTTTTTGCTGTATTTCCGTTATTAGTTTTTATCTGGACAGCAGTATGGAAAGAAAACTAAGTTTTATCAACTGTTTAAGAGCTTTTCGAAACTCGTGATTCGTCTTACGGGGACCCAACTTTGCATTTTGATAACTTTCAGAGAGTTTGACCTTTTTTCTGGAGTTTATGTACCCAAATTTTATTGTTACTATTATTACTCTTGATATATTTTTTNTGCGTTATTATATCGTAATCGGTCAACATAACAGCAGAATCTGCTTTAAATGGTTTGTCTCAGCTGCCTATTTGTCTCTTCTAAGATTTGT ] [-] EMBL CD160721 [ GCAATAGTTCTATCTTGTCAAATTTATCTTCAACAGGTTTACAGAGTAGACAAGTGTGTTTAGATTCACAAAATACTGATACCTTAATTTTTCCTATGATGTCTCCATCAGTTTCGCATTCAGATGCCACCTCGAATTCATCTACGATGTAGTAGCGATCAGACACTATAAGAATTGAGTTGTTTTTGTCTTATCATACGTTTACATCAAAAGTTCTTA TTTTTGCTGTATTTCCGTTATTAATTTTTATCTGGACAGCAGTATGGAAAGAAAACTAAGTTTTATCAACTGTTTAAGAGCTTTTCGAAACTCGTGATTCGTCTTACGGGGACCCAACTTTGCATTTTGATAACTTTCAGAGAGTTTGACCTTTTTTCTGGAGTTTATGTACCCAAATTTTATTGTTACTATTATTACTCTTGATATATTTTTT TGCGTTATTATATCGTAATCGGTCAACATAACAGCAGAATCTGCTTTAAATGGTTTGTCTCAGCTGCCTATTTGTCTCTTCTAAGATTTGT ] [+] EMBL CD084053 [ acgaggCAAATTTATCTTCAACAGGTTTACAGAGTAGACAAGTGTGTTTAGATTCACAAAATACTGATACCTTAATTTTTCCTATGATGTCTCCATCAGTTTCGCATTCAGATGCCACCTCGAATTCATCTACGATGTAGTAGCGATCAGACACTATAAGAATTTAGTTGTTTTTGTCTTATCATACGTTTACATCAAAAATTCTTA TTTTTGCTGTATTTCCGTTATTAATTTTTATCTGGACAGCAGTATGGAAAGAAAACTAAGTTTTATCAACTGTTTAAGAGCTTTTCGAAACTCGTGATTCGTCTTACGGGGACCCAACTTTGCATTTTGATAACTTTCAGAGAGTTTGACCTTTTTTCTGGAGTTTATGTACCCNAATTTTATTGTTACTATTATTACTCTT ] [-] EMBL CD151663 [ TTTTTTCTGGAGTTTATGAACCCAAATTTTATTGTTACTATTATTACTCTTGATATATTTTTN TGCGTTATTATATCGTAATCGGTCAACATAACAGCAGAATCTGCTTTAAATGGTTTGTCTCAGCTGCCTATTTGTCTCTTCTAAGATTTGTCTTCTAGACCCTTCCAATCACTTTCTTTAATATCTTCATACGAATTTTGCTATTTCTTTTGTTTCCGAACTAAATATTATGGTCTAGTCGTTGCGTTTTCGTGTTAATTTCTTGTGTTATCCTTTATGATTTTGTTCTTACCTTTCCCTTTTTCAATGTGTTGCTTAACGCTTTGTAGTCGATACTAAAATTGTGGTCTTTGTTTTGTATTCACAACTTATGCACACTTTTCCAACTCATATTTAATATTCATACGTTTAAGAGTGTCTCAATGGTTGGCTAGTCATCTTTTTTCCTGTTTCTTATCTTTCATGTTCAGTT] consensusID : consensus_8895#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 315 fasta sequence [TATGGAAACAAACTAAAGTTTTATCAACTGTTTAAGAGCTTTCCGAAACTAGTGATTCGTCTTACGGGGACCCAACTGTGCGTTTTGATCCCTTTCAGAGAGTGTGACCTTTTTTCTGGAGTTTATGTACCCAAATTTTACTGTTGCTACTATGACTCTTGATATATTTTTTTGCGTTATTATATCGTAATCGGTCAACATAACAGCAGAATCTGCTTTAAATGGTTTGTCTCAGCTGCCTATTTGTCTCTTCTAAAAAATGTCTTCTAGACCCGCCGTCTATCTCAATACATTATTTAACTCGGACCCTGCAAC] [-] EMBL BG930157 [TATGGAAACAAACTAAAGTTTTATCAACTGTTTAAGAGCTTTCCGAAACTAGTGATTCGTCTTACGGGGACCCAACTGTGCGTTTTGATCCCTTTCAGAGAGTGTGACCTTTTTTCTGGAGTTTATGTACCCAAATTTTACTGTTGCTACTATGACTCTTGATATATTTTTTTGCGTTATTATATCGTAATCGGTCAACATAACAGCAGAATCTGCTTTAAATGGTTTGTCTCAGCTGCCTATTTGTCTCTTCTAAAAAATGTCTTCTAGACCCGCCGTCTATCTCAATACATTATTTAACTCGGACCCTGCAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8895#0 CTATCATCTCAGTCGTACAGTAGTTTGAATTTTAATAGTTCAGTATGTGACAACTTTACT 60 consensus_8895#1 ------------------------------------------------------------ consensus_8895#0 AATATCAACCCACATTCAATATTCATGACATCTAATGAACCTAGTTGTTTTCAATTCGGG 120 consensus_8895#1 ------------------------------------------------------------ consensus_8895#0 ATGAGAAGTCCCACTGATGATAAGCCCAACTCTTTTGATTTCACTACATTTGGTCCCGTT 180 consensus_8895#1 ------------------------------------------------------------ consensus_8895#0 GGGTCTTCATCACCAGCCGGTGCTTTCATCCACTCAAATTTAATTAGTTCTAACTGCAAT 240 consensus_8895#1 ------------------------------------------------------------ consensus_8895#0 AGTTCTATCTTGTCAAATTTATCTTCAACAGGTTTACAGAGTAGACAAGTGTGTTTAGAT 300 consensus_8895#1 ------------------------------------------------------------ consensus_8895#0 TCACAAAATACTGATACCTTAATTTTTCCTATGATGTCTCCATCAGTTTCGCATTCAGAT 360 consensus_8895#1 ------------------------------------------------------------ consensus_8895#0 GCCACCTCGAATTCATCTACGATGTAGTAGCGATCAGACACTATAAGAATTGAGTTGTTT 420 consensus_8895#1 ------------------------------------------------------------ consensus_8895#0 TTGTCTTATCATACGTTTACATCAAAAATTCTTATTTTTGCTGTATTTCCGTTATTAATT 480 consensus_8895#1 ------------------------------------------------------------ consensus_8895#0 TTTATCTGGACAGCAGTATGGAAAGAAAACTAAGTTTTATCAACTGTTTAAGAGCTTTTC 540 consensus_8895#1 ----------------TATGGAAACAAACTAAAGTTTTATCAACTGTTTAAGAGCTTTCC 44 ******** *** *************************** * consensus_8895#0 GAAACTCGTGATTCGTCTTACGGGGACCCAACTTTGCATTTTGATAACTTTCAGAGAGTT 600 consensus_8895#1 GAAACTAGTGATTCGTCTTACGGGGACCCAACTGTGCGTTTTGATCCCTTTCAGAGAGTG 104 ****** ************************** *** ******* ************ consensus_8895#0 TGACCTTTTTTCTGGAGTTTATGTACCCAAATTTTATTGTTACTATTATTACTCTTGATA 660 consensus_8895#1 TGACCTTTTTTCTGGAGTTTATGTACCCAAATTTTACTGTTGCTACTATGACTCTTGATA 164 ************************************ **** *** *** ********** consensus_8895#0 TATTTTTTTGCGTTATTATATCGTAATCGGTCAACATAACAGCAGAATCTGCTTTAAATG 720 consensus_8895#1 TATTTTTTTGCGTTATTATATCGTAATCGGTCAACATAACAGCAGAATCTGCTTTAAATG 224 ************************************************************ consensus_8895#0 GTTTGTCTCAGCTGCCTATTTGTCTCTTCTAAGATTTGTCTTCTAGACCCTTCCAATCAC 780 consensus_8895#1 GTTTGTCTCAGCTGCCTATTTGTCTCTTCTAAAAAATGTCTTCTAGACCCG-CCGTCTAT 283 ******************************** * ************** ** * consensus_8895#0 TTTCTTTAATATCTTCATACGAATTTTGCTATTTCTTTTGTTTCCGAACTAAATATTATG 840 consensus_8895#1 CTCAATACATTATTTAACTCGGACCCTGCAAC---------------------------- 315 * * ** ** * ** * *** * consensus_8895#0 GTCTAGTCGTTGCGTTTTCGTGTTAATTTCTTGTGTTATCCTTTATGATTTTGTTCTTAC 900 consensus_8895#1 ------------------------------------------------------------ consensus_8895#0 CTTTCCCTTTTTCAATGTGTTGCTTAACGCTTTGTAGTCGATACTAAAATTGTGGTCTTT 960 consensus_8895#1 ------------------------------------------------------------ consensus_8895#0 GTTTTGTATTCACAACTTATGCACACTTTTCCAACTCATATTTAATATTCATACGTTTAA 1020 consensus_8895#1 ------------------------------------------------------------ consensus_8895#0 GAGTGTCTCAATGGTTGGCTAGTCATCTTTTTTCCTGTTTCTTATCTTTCATGTTCAGTT 1080 consensus_8895#1 ------------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||