These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8903#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 754 fasta sequence [TTAATTGACTGAAATCACGTCGAGCTCCAATATTAACTGATTCAGATGTATTACGTTTTTGACGTTTTTTCTGTCCACCATGACCATATTTATTATTTTTATAAACACGTTTTTGATTAGTCTTTCGTCGATTTGCATAATCTTTTGCTGTATGGAAACTTTTCAATGATGATGATGATCCTTTCACATTGGATTTATCATTTTTCGGTTCATAATCTTTTTTAAATTCATTTAATATTTGTTCCAGTTTCTCTTCACGATTAATTCCAGTTTTCTTCCATGTACTCTTTACAGCTTCTGTTAGT-TTACGTTTTTCTTCTTTACGTGTTTGATTAACAGCCTGTTGAACTTGTTTACCAAATTTACGTCGTTCTCTTATTTGTCTGGCACGTTCACGTAATGCTAATTTTTGTTTAGTTTCAATTAGATATTTTTTAACCTTTGTCATGTGATCATCTGTTTTGACCATTTCTGCAAAGTAATCAGATGGACGTTTAGTCGGTACATCTAAAGCGTGTAATTGAGGTATAGCTTTAAGCACTGCAGACTGAGCTACACGATAAAAAAAGTTTTCACGTTTAAAATCATCATCTGGATCGATATGTTGTAAGTCGTCCAAATCTAAATCTTTTTGAGCTGGAGCTGCCGAACATGTGACATCTAATCGCTCAATCCATGGGAGACTTTTTCTGATACTACTGAGAGTATTTATAAGAGCTGACTTATTATATACATGTTTCTTTTCATGTGTAAT] [+] EMBL CD122844 [TTAATTGACTGAAATCACGTCGAGCTCCAATATTAACTGATTCAGATGTATTACGTTTTTGACGTTTTTTCTGTCCACCATGACCATATTTATTATTTTTATAAACACGTTTTTGATTAGTCTTTCGTCGATTTGCATAATCTTTTGCTGTATGGAAACTTTTCAATGATGATGATGATCCTTTCACATTGGATTTATCATTTTTCGGTTCATAATCTTTTTTAAATTCATTTAATATTTGTTCCAGTTTCTCTTCACGATTAATTCCAGTTTTCTTCCATGTACTCTTTACAGCTTCTGTTAGT TTACGTTTTTCTTCTTTACGTGTTTGATTAACAGTCTGTTGAACTTGTTTACCAAATTTACGTCGTTCTCTTATTTGTCTGGCACGTTCACGTAATGCTAATTTTTGTTTAGTTTCAATTAGATATTTTTTAACCTTTGTCATGTGATCATCTGTTTTGACCATTTCTGCAAAGTAATCAGATGGACGTTTAGTCGGTACATCTAAAGCGTGTAATTGAGGTATAGCTTTAAGCACTGCAGACTGAGCTACACGATAAAAAAAGTTNTCACGTTTAAAATCATCATCTGGATCGATATGTTGTAAGTCGTCCAAAT ] [-] EMBL CD110779 [ ATTCCAGTTTTCTTCCATGTACTCTTTACAGCTTCTG TAGTNNTACGTTTTCTTTCTTTACGTGTTTGATTAACAGCCTGTTGAACTTGTTTACCAAATNTACGTCGTTCTCTTATTTGTCTGGCACGTTCACGTAATGCTAATTTTTGTTTAGTTTCAATTAGATATTTTTTAACCTTTGTCATGTGATCATCTGTTTTGACCATTTCTGCAAAGTAATCAGATGGACGTTTAGTCGGTACATCTAAAGCGTGTAATTGAGGTATAGCTTTAAGCACTGCAGACTGAGCTACACGATAAAAAAAGTTTTCACGTTTAAAAT ] [+] EMBL CD114024 [ CCAGTTTTCTTCCATGTACTCTTTACAGCTTCTGTTAGT TTACGTTTTTCTTCTTTACGTGTTTGATTAACAGCCTGTTGAACTTGTTTACCAAATTTACGTCGTTCTCTTATTTGTCTGGCACGTTCACGTAATGCTAATTTTTGTTTAGTTTCAATTAGATATTTTTTAACCTTTGTCATGTGATCATCTGTTTTGACCATTTCTGCAAAGTAATCAGATGGACGTTTAGTCGGTACATCTAAAGCGTGTAATTGAGGTATAGCTTTAAGCACTGCAGACTGAGCTACACGATAAAAAAAGTTTTCACGTTTAAAATCATCATCTGGATCGATATGTTGTAAGTCGTCCAAATCTAAATCTTTTTGAGCTGGAGCTGCCGAACATGTGACATCTAATCGCTCAATCCATGGG ] [+] EMBL CD179385 [ TTTCTTCTTTACGTGTTTGATTAACAGCCTGTTGAACTTGTTTACCAAATTTACGTCGTTCTCTTATTTGTCTGGCACGTTCACGTAATGCTAATTTTTGTTTAGTTTCAATTAGATGTTTTTTAACCTTTGTCATGTGATCATCTGTTTTGACCATTTCTGCAAAGTAATCAGATGGACGTTTAGTCGGTACATCTAAAGCGTGTAATTGAGGTATAGCTTTAAGCACTGCAGACTGAGCTACACGATAAAAAAAGTTTTCACGTTTAAAATCATCATCTGGATCGATATGTTGTTAGTCGTCCAAATCTAAATCTTTTTGAGCTGGAGCTGCCGAACATGTGACATCTAATCGCTCAATCCATGGGAGACTTTTTCTGATACTACTGAGAGTATTTATAAGAGCTGACTTATTATATACATGTTTCTTTTCATGTGTAA ] [-] EMBL CD161421 [ TTCTTCTTTACGTGTTTGATTAACAGCCTGTTGAACTTGTTTACCAAATTTACGTCGTTCTCTTATTTGTCTGGCACGTTCACGTAATGCTAATTTTTGTTTAGTTTCAATTAGATATTTTTTAACCTTTGTCATGTGATCATCTGTTTTGACCATTTCTGCAAAGTAATCAGATGGACGTTTAGTCGGTACATCTAAAGCGTGTAATTGAGGTATAGCTTTAAGCACTGCAGACTGAGCTACACGATAAAAAAAGTTTTCACGTTTAAAATCATCATCTGGATCGATATGTTGTAAGTCGTCCAAATCTAAATCTTTTTGAGCTGGAGCTGCCGAACATGTGACATCTAATCGCTCAATCCATGGGAGACTTTTTCTGATACTACTGAGAGTATTTATAAGAGCTGACTTATTATATACATGTTTCTTTTCATGTGTAAT] consensusID : consensus_8903#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 396 fasta sequence [GTCAATAATAGGGCGAGGTTTTGGTTAACGATTATGAGATTTATATACTGAGGAATTAGTTTCCATTAGATATTTTTTAACCTTTGTCATGTGATCATCTGTTTTGACCATTTCTGCGAAGTAATCAGATGGACGTTTAGTCGGTACATCTAAAGCGTGTAATTGAGGTATAGCTTTAAGCACTGCAGACTGAGCTACACGATAAAAAAAGTTTTCACGTTTAAAATCATCATCTGGATCGATATGTTGTAAGTCGTCCAAATCTAAATCTTTTTGAGCTGGAGCTGCCGAACATGTGACATCTAATCGCTCAATCCATGGGAGACTTTTTCTGATACTACTGAGAGTATTTATAAGAGCTGACTTATTATAGACATGTTTCTTTTCATGTGTAAT] [-] EMBL CD091695 [GTCAATAATAGGGCGAGGTTTTGGTTAACGATTATGAGATTTATATACTGAGGAATTAGTTTCCATTAGATATTTTTTAACCTTTGTCATGTGATCATCTGTTTTGACCATTTCTGCGAAGTAATCAGATGGACGTTTAGTCGGTACATCTAAAGCGTGTAATTGAGGTATAGCTTTAAGCACTGCAGACTGAGCTACACGATAAAAAAAGTTTTCACGTTTAAAATCATCATCTGGATCGATATGTTGTAAGTCGTCCAAATCTAAATCTTTTTGAGCTGGAGCTGCCGAACATGTGACATCTAATCGCTCAATCCATGGGAGACTTTTTCTGATACTACTGAGAGTATTTATAAGAGCTGACTTATTATAGACATGTTTCTTTTCATGTGTAAT] consensusID : consensus_8903#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence [AGTTTCAGTTAGATATTGTTTAACCTTTGTCATGTGATCATCTGTTTTGACCATTTCTGCAAAGTAATCAGATGGACGTTTAGTCGGTACATATAAAGCGTGTAATTGAGGTATAGCTTTAAGCACTGCAGAGTGAGCTACACGATAAAAGAAGTTTTCACGTTTAAAATCATCATCTGGATCGATATGTTGTAAGTCGTCCAAATGTAAATCTTTTTGAGCTGGAGCTGCCGAACATGTGACATATAATCGCTCAATCCATGGAGAGACTTTTTCTGATCACGCGCTGAGGAGTATCTTCATAAGCACGCTGGGCTCTATTATACACCACGTATCTCTTTAGACAGGGAT] [-] EMBL CD091743 [AGTTTCAGTTAGATATTGTTTAACCTTTGTCATGTGATCATCTGTTTTGACCATTTCTGCAAAGTAATCAGATGGACGTTTAGTCGGTACATATAAAGCGTGTAATTGAGGTATAGCTTTAAGCACTGCAGAGTGAGCTACACGATAAAAGAAGTTTTCACGTTTAAAATCATCATCTGGATCGATATGTTGTAAGTCGTCCAAATGTAAATCTTTTTGAGCTGGAGCTGCCGAACATGTGACATATAATCGCTCAATCCATGGAGAGACTTTTTCTGATCACGCGCTGAGGAGTATCTTCATAAGCACGCTGGGCTCTATTATACACCACGTATCTCTTTAGACAGGGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8903#0 TTAATTGACTGAAATCACGTCGAGCTCCAATATTAACTGATTCAGATGTATTACGTTTTT 60 consensus_8903#2 ------------------------------------------------------------ consensus_8903#1 ------------------------------------------------------------ consensus_8903#0 GACGTTTTTTCTGTCCACCATGACCATATTTATTATTTTTATAAACACGTTTTTGATTAG 120 consensus_8903#2 ------------------------------------------------------------ consensus_8903#1 ------------------------------------------------------------ consensus_8903#0 TCTTTCGTCGATTTGCATAATCTTTTGCTGTATGGAAACTTTTCAATGATGATGATGATC 180 consensus_8903#2 ------------------------------------------------------------ consensus_8903#1 ------------------------------------------------------------ consensus_8903#0 CTTTCACATTGGATTTATCATTTTTCGGTTCATAATCTTTTTTAAATTCATTTAATATTT 240 consensus_8903#2 ------------------------------------------------------------ consensus_8903#1 ------------------------------------------------------------ consensus_8903#0 GTTCCAGTTTCTCTTCACGATTAATTCCAGTTTTCTTCCATGTACTCTTTACAGCTTCTG 300 consensus_8903#2 ------------------------------------------------------------ consensus_8903#1 ------------------------------------------------------------ consensus_8903#0 TTAGTTTACGTTTTTCTTCTTTACGTGTTTGATTAACAGCCTGTTGAACTTGTTTACCAA 360 consensus_8903#2 ------------------------------------------------------------ consensus_8903#1 -------------------------------------------------------GTCAA 5 consensus_8903#0 ATTTACGTCGTTCTCTTATTTGTCTGGCACGTTCACGTAATGCTAATTTTTGTTTAGTTT 420 consensus_8903#2 -------------------------------------------------------AGTTT 5 consensus_8903#1 TAATAGGGCGAGGTTTTGGTTAACGATTATGAGATTTATATACTGA---GGAATTAGTTT 62 ***** consensus_8903#0 CAATTAGATATTTTTTAACCTTTGTCATGTGATCATCTGTTTTGACCATTTCTGCAAAGT 480 consensus_8903#2 CAGTTAGATATTGTTTAACCTTTGTCATGTGATCATCTGTTTTGACCATTTCTGCAAAGT 65 consensus_8903#1 CCATTAGATATTTTTTAACCTTTGTCATGTGATCATCTGTTTTGACCATTTCTGCGAAGT 122 * ********* ****************************************** **** consensus_8903#0 AATCAGATGGACGTTTAGTCGGTACATCTAAAGCGTGTAATTGAGGTATAGCTTTAAGCA 540 consensus_8903#2 AATCAGATGGACGTTTAGTCGGTACATATAAAGCGTGTAATTGAGGTATAGCTTTAAGCA 125 consensus_8903#1 AATCAGATGGACGTTTAGTCGGTACATCTAAAGCGTGTAATTGAGGTATAGCTTTAAGCA 182 *************************** ******************************** consensus_8903#0 CTGCAGACTGAGCTACACGATAAAAAAAGTTTTCACGTTTAAAATCATCATCTGGATCGA 600 consensus_8903#2 CTGCAGAGTGAGCTACACGATAAAAGAAGTTTTCACGTTTAAAATCATCATCTGGATCGA 185 consensus_8903#1 CTGCAGACTGAGCTACACGATAAAAAAAGTTTTCACGTTTAAAATCATCATCTGGATCGA 242 ******* ***************** ********************************** consensus_8903#0 TATGTTGTAAGTCGTCCAAATCTAAATCTTTTTGAGCTGGAGCTGCCGAACATGTGACAT 660 consensus_8903#2 TATGTTGTAAGTCGTCCAAATGTAAATCTTTTTGAGCTGGAGCTGCCGAACATGTGACAT 245 consensus_8903#1 TATGTTGTAAGTCGTCCAAATCTAAATCTTTTTGAGCTGGAGCTGCCGAACATGTGACAT 302 ********************* ************************************** consensus_8903#0 CTAATCGCTCAATCCATGG-GAGACTTTTTCTGAT-----ACTACTGAGAGTATTTATAA 714 consensus_8903#2 ATAATCGCTCAATCCATGGAGAGACTTTTTCTGATCACGCGCTGAGGAGTATCTTCATAA 305 consensus_8903#1 CTAATCGCTCAATCCATGG-GAGACTTTTTCTGAT-----ACTACTGAGAGTATTTATAA 356 ****************** *************** ** *** * ** **** consensus_8903#0 GA--GCTGA--CTTATTATATAC-ATGTTTCTTTTCATGT-GTAAT 754 consensus_8903#2 GCACGCTGGGCTCTATTATACACCACGTATCTCTTTAGACAGGGAT 351 consensus_8903#1 GA--GCTGA--CTTATTATAGAC-ATGTTTCTTTTCATGT-GTAAT 396 * **** ******* ** * ** *** ** * * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||