These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8937#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 886 fasta sequence [GGAATTCGTTCTCGAGGCGACTAGGTTTTGGCGCAAGAGCATTCAGGCTACAATTTTGGTCTATATACTAGACGCGAATTCAACTTAGTTTTTAAGAATATTCAGTGTTTTCAGATGTCCGCCGTAACGGATGACGAAATCATAAAGAGAAGACTCTTAATTGAAGGCGAAAGTGGAAATGATGACCGCAGAATTACACTATTACTTAAAAATTATCTTCGATGGGTAGCTTCTGATGATGTTGGTGAAGACGGCTACGAAGCTTATCAAGCCCTTATAGCTAGTGTTTACCAGTGTGAAAACGCCATGGAACAGTCGTCATTAGTAATAGCTATGAACTACGAACAGCAAAAACAGTATGAGGATTTATATAAAGAGATCGAAACGGCCATTGAAAGTGC-AAAAAATCGCATTCAACAATGTAAAGAAGATCTGAGATCCGCAAAAACTGTCAGGAAAAATAGACGAGAGTATGACAGTCTTGCCAAAGTTCTCTGTGATCATCCAGAGAGAGATGAGACACTTGAAAAATATAGAAAATTAAAAGCTACTTTAGAACGACTGGAGAATTTAAGTGAAGAGTACGACCGAAAAATTCAGCTTAGAAAAACTCAATTTCATTTATTTTTGGTTGCCCTAAAGGGTTTAC-AAAAAATTGTTGAGGATGATGATCTATCTTCAGTCAAAGATGATTTGATGCCTACACAGTCATCAAAGTCTGTACACGAAGAGATTTCTATGAAAATGGATACAACTTGAAGATTATGTATATACGTATAGTAGCCGCAAACTTTTGCCTTTATTCATTGCGAGACCTTGATTGACTTCGCTTCAATCTTGATACGATCTTTGTACGTACGTCTTGTAAATAT-AAATAT-ACATGTAA] [+] EMBL CD077950 [GGAATTCGTTCTCGAGGCGACTAGGTTTTGGCGCAAGAGCATTCAGGCTACAATTTTGGTCTATATACTAGACGCGAATTCAACTTAGTTTTTAAGAATATTCAGTGTTTTCAGATGTCCGCCGTAACGGATGACGAAATCATAAAGAGAAGACTCTTAATTGAAGGCGAAAGTGGAAATGATGACCGCAGAATTACACTATTACTTAAAAATTATCTTCGATGGGTAGCTTCTGATGATGTTGGTGAAGACGGCTACGAAGCTTATCAAGCCCTTATAGCTAGTGTTTACCAGTGTGAAAACGCCATGTAACAGTCGTCATTA ] [+] EMBL CD080625 [ CAGATGTCCGCCGTAACGGATGACGAAATCATAAAGAGAAGACTCTTAATTGAAGGCGAAAGTGGAAATGATGACCGCAGAATTACACTATTACTTAAAAATTATCTTCGATGGGTAGCTTCTGATGATGTTGGTGAAGACGGCTACGAAGCTTATCAAGCCCTTATAGCTAGTGTTTACCAGTGTGAAAACGCCATGGAACAGTCGTCATTAGTAATAGCTATGAACTACGAACAGCAAAAACAGTATGAGGATTTATATAAAGAGATCGAAACGGCCATTGAAAGTGC AAAAAATCGCATTCAACAATGTAAAGAAGATCTGAGATCCGCAAAAACTGTCAGGAAAAATAGACGAGAGTATGACAGTCTTGCCAAAGTTCTCTGTGATCATCCAGAGAGAGATGAGACACTTGAAAAATATAGAAAATTAAAAGCTACTTTAGAACGACTGGAGAATTTAAGTGAAGAGTACGACCGAAAAATTCAGCTTAGAAAAACTCAATTTCATTTATTTTTGGTTGCCCTAAAGGGTTTAC AAAAAATTGTTGAGGATGATGATCTATCTTCAGTCAAAGATGATTTGATGCCTACACAGTCATCANAGTCTGTACACGAAGAGATTTCTATGAAAATGGATACAACTTGAAGATTATGTATATACGTATAGTAGCCGC AACTTTTGCCTTTATTCATTGCGAGACCTTGATTGACTTCGCTTCAATCTTGATACGATCTTTGTACGTACGTCTTGT AATAT AAATAT ACATGT ] [+] EMBL CD080626 [ aggCAGATGTCCGCCGTAACGGATGACGAAATCATAAAGAGAAGACTCTTAATTGAAGGCGAAAGTGGAAATGATGACCGCAGAATTACACTATTACTTAAAAATTATCTTCGATGGGTAGCTTCTGATGATGTTGGTGAAGACGGCTACGAAGCTTATCAAGCCCTTATAGCTAGTGTTTACCACTGTGAAAACGCCATGGAACAGTCGTCATTAGTAATAGCTATGAACTACGAACAGCAAAAACAGTATGAGGATTTATATAAAGAGATCGAAACGGCCATTGAAAGTGC AAAAAATCGCATTCAACAATGTAAAGAAGATCTGAGATCCGCAAAAACTGTCAGGAAAAATAGACGAGAGTATGACAGTCTTGCCAAAGTTCTCTGTGATCATCCAGAGAGAGATGAGACACTTGAAAAATATAGAAAATTAAAAGCTACTTTAGAACGACTGGAGAATTTAAGTGAAGAGTACGACCGAAAAATTCAGCTTAGAAAAACTCAATTTCATTTATTTTTGGTTGCCCTAAAGGGTTTAC AAAAAATTGTTGAGGATGATGATCTATCTTTAGTTAAAGATGATTTGAT ] [-] EMBL CD074535 [ CTTCTGATGATG TGGTGAAGACGGCTACGAAGCTTATCAAGCCCTTATAGCTAGTGTTTACCAGTGTGAAAACGCCATGGAACAGTCGTCATTAGTAATAGCTATGAACTACGAACAGCAAAAACAGTATGAGGATTTATATAAAGAGATCGAAACGGCCATTGAAAGTGC AAAAAATCGCATTCAACAATGTAAAGAAGATCTGAGATCCGCAAAAACTGTCAGGAAAAATAGACGAGAGTATGACAGTCTTGCCAAAGTTCTCTGTGATCATCCAGAGAGAGATGAGACACTTGAAAAATATAGAAAATTAAAAGCTACTTTAGAACGACTGGAGAATTTAAGTGAAGAGTACGACCGAAAAATTCAGCTTAGAAAAACTCAATTTCATTTATTTTTGGTTGCCCTAAAGGGTTTAC AAAAAATTGTTGAGGATGATGATCTATCTTCAGTCAAAGATGATTTGATGCCTACACAGTCATCAAAGTCTGTACACGAAGAGATTTCTATGAAAATGGATACAACTTGAAGATTATGTATATACGTATAGTAGCCGCAAACTTTTGCCTTTATTCATTGCGAGACCTTGATTGACTTCGCTTCAATCTTGATACGATCTTTGTACGTACGTCTTGTAAATATAAAATATCACATGTAA] [+] EMBL CD134368 [ GCCATGGAACATTCGTCATTAGTAATAGCTATGAACTACGATCAGCAAAAACAGTATGAGGATTTATATAAAGAGATCGAAACGGCCATTGAAAGTGC AAAAAATCGCATTCAACAATGTAAAGAAGATCTGAGATCCGCAAAAACTGTCAGGAAAAATAGACGAGAGTATGA ] [-] EMBL CD069241 [ ACAGTATGAGGATTTATATAAAGAGATCGAAACGGCCATTGAAAGTGCAAAAAAATCGCATTCAACAATGTAAAGAAGATCTGAGATCCGCAAAAACTGTCAGGAAAAATAGACGAGAGTATGACAGTCTTGCCAAAGTTCTCTGTGATCATCCAGAGAGAGATGAGACACTTGAAAAATATAGAAAATTAAAAGCTACTTTAGAACGACTGGAGAATTTAAGTGAAGAGTACGACCGAAAAATTCAGCTTAGAAAAACTCAATTTCATTTATTTTTGGTTGCCCTAAAGGGTTTACAAAAAAATTGTTGAGGATGATGATCTATCTTCAGTCAAAGATGATTTGATGCCTACACAGTCATCAAAGTCTGTACACGAAGAGATTTCTATGAAAATGGATACAACTTGAAGATTATGTATATACAAGTAGTA ] [-] EMBL CD077234 [ AGATCGAAACGGCCATTGAAAGTGC AAAAAATCGCATTCAACAATGTAAAGAAGATCTGAGATCCGCAAAAACTGTCAGGAAAAATAGACGAGAGTATGACAGTCTTGCCAAAGTTCTCTGTGATCATCCAGAGAGAGATGAGACACTTGAAAAATATAGAAAATTAAAAGCTACTTTAGAACGACTGGAGAATTTAAGTGAAGAGTACGACCGAAAAATTCAGCTTAGAAAAACTCAATTTCATTTATTTTTGGTTGCCCTAAAGGGTTTAC AAAAAATTGTTGAGGATGATGATCTATCTTCAGTCAAAGATGATTTGATGCCTACACAGTCATCAAAGTCTGTACACGAAGAGATTTCTATGAAAATGGATACAACTTGAAGATTATGTATATACGTATAGTAGCCGCAAACTTTTGCCTTTATTCATTGCGAGACCTTGATTGACTTCGCTTCAATCTTGATACGATCTTTGTACGTACGTCTTGTAAATAT AAAat ] consensusID : consensus_8937#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence [CTCGCAGGCCGNAATTCGGCACGAGGATATACTAGACGCGAATTCAACTTAGTTTTTAAGAATATTCAGTGTTTTCAGATGTCCGCCGTAACGGATGACGAAATCATAAAGAGAAGACTCTTAATTGAAGGCGAAAGTGGAAATGATGACCGCAGAATTACACTATTACTTAAAAATTATCTTCGATGGGTAGCTTCTGATGATGTTGGTGAAGACGGCTACGAAGCTTATCAAGCCCTTATAGCTAGTGTTTACCAGTGTGAAAACGCCATGGAACAGTCGTCATTAGTAATAGCTATGAACTACGAACAGCANANACAGTATGAGGATTTATATAAAGAGATCGAAACGGCCATTGAAAG] [+] EMBL CD077685 [CTCGCAGGCCGNAATTCGGCACGAGGATATACTAGACGCGAATTCAACTTAGTTTTTAAGAATATTCAGTGTTTTCAGATGTCCGCCGTAACGGATGACGAAATCATAAAGAGAAGACTCTTAATTGAAGGCGAAAGTGGAAATGATGACCGCAGAATTACACTATTACTTAAAAATTATCTTCGATGGGTAGCTTCTGATGATGTTGGTGAAGACGGCTACGAAGCTTATCAAGCCCTTATAGCTAGTGTTTACCAGTGTGAAAACGCCATGGAACAGTCGTCATTAGTAATAGCTATGAACTACGAACAGCANANACAGTATGAGGATTTATATAAAGAGATCGAAACGGCCATTGAAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8937#0 GGAATTCGTTCTCGAGGCGACTAGGTTTTGGCGCAAGAGCATTCAGGCTACAATTTTGGT 60 consensus_8937#1 ---------------------------------------CTCGCAGGCCGNAATTCGGCA 21 * ***** **** * consensus_8937#0 CTA---TATACTAGACGCGAATTCAACTTAGTTTTTAAGAATATTCAGTGTTTTCAGATG 117 consensus_8937#1 CGAGGATATACTAGACGCGAATTCAACTTAGTTTTTAAGAATATTCAGTGTTTTCAGATG 81 * * ****************************************************** consensus_8937#0 TCCGCCGTAACGGATGACGAAATCATAAAGAGAAGACTCTTAATTGAAGGCGAAAGTGGA 177 consensus_8937#1 TCCGCCGTAACGGATGACGAAATCATAAAGAGAAGACTCTTAATTGAAGGCGAAAGTGGA 141 ************************************************************ consensus_8937#0 AATGATGACCGCAGAATTACACTATTACTTAAAAATTATCTTCGATGGGTAGCTTCTGAT 237 consensus_8937#1 AATGATGACCGCAGAATTACACTATTACTTAAAAATTATCTTCGATGGGTAGCTTCTGAT 201 ************************************************************ consensus_8937#0 GATGTTGGTGAAGACGGCTACGAAGCTTATCAAGCCCTTATAGCTAGTGTTTACCAGTGT 297 consensus_8937#1 GATGTTGGTGAAGACGGCTACGAAGCTTATCAAGCCCTTATAGCTAGTGTTTACCAGTGT 261 ************************************************************ consensus_8937#0 GAAAACGCCATGGAACAGTCGTCATTAGTAATAGCTATGAACTACGAACAGCAAAAACAG 357 consensus_8937#1 GAAAACGCCATGGAACAGTCGTCATTAGTAATAGCTATGAACTACGAACAGCANANACAG 321 ***************************************************** * **** consensus_8937#0 TATGAGGATTTATATAAAGAGATCGAAACGGCCATTGAAAGTGCAAAAAATCGCATTCAA 417 consensus_8937#1 TATGAGGATTTATATAAAGAGATCGAAACGGCCATTGAAAG------------------- 362 ***************************************** consensus_8937#0 CAATGTAAAGAAGATCTGAGATCCGCAAAAACTGTCAGGAAAAATAGACGAGAGTATGAC 477 consensus_8937#1 ------------------------------------------------------------ consensus_8937#0 AGTCTTGCCAAAGTTCTCTGTGATCATCCAGAGAGAGATGAGACACTTGAAAAATATAGA 537 consensus_8937#1 ------------------------------------------------------------ consensus_8937#0 AAATTAAAAGCTACTTTAGAACGACTGGAGAATTTAAGTGAAGAGTACGACCGAAAAATT 597 consensus_8937#1 ------------------------------------------------------------ consensus_8937#0 CAGCTTAGAAAAACTCAATTTCATTTATTTTTGGTTGCCCTAAAGGGTTTACAAAAAATT 657 consensus_8937#1 ------------------------------------------------------------ consensus_8937#0 GTTGAGGATGATGATCTATCTTCAGTCAAAGATGATTTGATGCCTACACAGTCATCAAAG 717 consensus_8937#1 ------------------------------------------------------------ consensus_8937#0 TCTGTACACGAAGAGATTTCTATGAAAATGGATACAACTTGAAGATTATGTATATACGTA 777 consensus_8937#1 ------------------------------------------------------------ consensus_8937#0 TAGTAGCCGCAAACTTTTGCCTTTATTCATTGCGAGACCTTGATTGACTTCGCTTCAATC 837 consensus_8937#1 ------------------------------------------------------------ consensus_8937#0 TTGATACGATCTTTGTACGTACGTCTTGTAAATATAAATATACATGTAA 886 consensus_8937#1 ------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||